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[ENH] Derived (processed) MR data#109

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chrisgorgo merged 112 commits intobids-standard:derivativesbids-standard/bids-specification:derivativesfrom chrisgorgo:enh/derivativeschrisgorgo/bids-specification:enh/derivativesCopy head branch name to clipboardApr 14, 2019

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Commits on Dec 16, 2018

• Adding derivatives

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• adding derivatives to the index

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• fix index

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• fixed links

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• fixed links

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• template cleanup

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• Update src/05-derivatives/05-diffusion-derivatives.md

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• Merge branch 'master' of github.com:bids-standard/bids-specification into enh/derivatives

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• syntax fixes

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• remove old extensions

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Commits on Feb 28, 2019

• Merge branch 'master' of github.com:bids-standard/bids-specification into enh/derivatives

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• Update src/99-appendices/08-coordinate-systems.md

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• Update src/99-appendices/08-coordinate-systems.md

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• bring back space

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Commits on Mar 4, 2019

• Update src/05-derivatives/01-introduction.md

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• Update src/05-derivatives/02-common-data-types.md

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• Update src/05-derivatives/03-structural-derivatives.md

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• Update src/05-derivatives/03-structural-derivatives.md

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• Update src/05-derivatives/03-structural-derivatives.md

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• fix formatting

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• Merge branch 'master' of github.com:bids-standard/bids-specification into enh/derivatives

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• added a rule concerning pipline_name consistency

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• fix spaces

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• get rid of derivatived

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Commits on Mar 5, 2019

• add mention of source data in stanalone derivatives datasets

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• fix label T1w example

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• fix missing bracket

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• add missing 'w' in T2w

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• Limit number of allowed suffixes for scalar derivatives

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• Update src/99-appendices/08-coordinate-systems.md

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• adding CODEOWNERS

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• Merge branch 'enh/derivatives' of github.com:chrisfilo/bids-specification into enh/derivatives

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• adding missing end line

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• fix syntax

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• removing group

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Commits on Mar 6, 2019

• [ENC] getting rid of type- key

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• Merge pull request #3 from edickie/patch-1

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• bringing back space

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• clarify allowed values for 'space'

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• adding volumetric template used in in HCP

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• Merge pull request #4 from edickie/patch-2

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• added HCP spaces and introduced hybrid spaces

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• shorten labels, add links

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• FIX: Link subsections in functional derivatives

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• Merge pull request #7 from effigies/fix/subsection_links

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• MNIfsLR32k + clarifications

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• small fixes

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• Merge branch 'enh/derivatives' of github.com:chrisfilo/bids-specification into enh/derivatives

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• remove transforms since they are not part of this PR

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• remove transforms since they are not part of this PR

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Commits on Mar 7, 2019

• ENH: Rename regressors.tsv to timeseries.tsv

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• Typo

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• ENH: Rework metadata description

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• FIX: Subsection name, link

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• RF: Remove "regressor" term

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• adding myself to contributers

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• STY: Slightly less repetitive wording

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• Merge pull request #2 from effigies/enh/derivatives

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• Merge pull request #8 from edickie/patch-1

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• HCPMNI

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• Merge pull request #5 from chrisfilo/enh/cifti_spaces

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• fix syntax

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Commits on Mar 8, 2019

• fix syntax (for realz now)

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• adding very inflated surfaces

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• Merge pull request #10 from edickie/patch-3

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• Update src/05-derivatives/05-diffusion-derivatives.md

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Commits on Mar 15, 2019

• [INFRA] Adding instructions for naming PRs

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• REF: initial rewriting of coordinate system keys

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• Update src/05-derivatives/01-introduction.md

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Commits on Mar 16, 2019

• Merge pull request #11 from satra/enh/coordinates

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• fixes

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• [ENH] CoordinateSystem clarifications and examples

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• [ENH] CoordinateSystem clarifications and examples

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Commits on Mar 17, 2019

• address Satra's comments

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• address Satra's comments

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Commits on Mar 20, 2019

• Merge branch 'master' of github.com:bids-standard/bids-specification into enh/space_examples

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• Merge branch 'master' of github.com:bids-standard/bids-specification

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• Merge branch 'master' into enh/derivatives

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• fix a link typo

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• removal of the Definition section in Coordinate Spaces appendix

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• Update src/99-appendices/08-coordinate-systems.md

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• Update src/99-appendices/08-coordinate-systems.md

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• Merge branch 'enh/derivatives' into enh/space_examples

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• Merge branch 'enh/space_examples' of github.com:chrisfilo/bids-specification into enh/space_examples

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• fixes

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Commits on Mar 21, 2019

• adding desc to structural derivatives

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• Merge branch 'enh/derivatives' into enh/space_examples

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Commits on Mar 22, 2019

• anat->native + cleanup

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• cleaning leftover anat's

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• fix syntax

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• clarify links between raw and derived datasets

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• fixes

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Commits on Mar 24, 2019

• native -> individual

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• bringing back custom space

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• add volspace for meshes

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• fixes

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Commits on Mar 30, 2019

• ReferenceMap -> SpatialReference

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• Merge pull request #12 from chrisfilo/enh/space_examples

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Commits on Apr 14, 2019

• Merge branch 'master' of github.com:bids-standard/bids-specification into enh/derivatives

  

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