Fixed links for FASTQ files for new Ara-3 genomes

barricklab · Dec 31, 2017 · 6e12227 · 6e12227
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commit 6e12227
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Showing 20 changed files with 40 additions and 72 deletions.
diff --git a/LTEE-clone-curated/Ara-3_10000gen_ZDB1.gd b/LTEE-clone-curated/Ara-3_10000gen_ZDB1.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	X
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_19_ATCACG_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_19_ATCACG_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_19_ATCACG_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_19_ATCACG_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/009/SRR6178299/SRR6178299_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/009/SRR6178299/SRR6178299_2.fastq.gz
 MOB	1	.	REL606	16990	IS150	1	3
 SNP	2	.	REL606	281923	T
 INS	3	.	REL606	473904	GC

diff --git a/LTEE-clone-curated/Ara-3_10000gen_ZDB425.gd b/LTEE-clone-curated/Ara-3_10000gen_ZDB425.gd
@@ -5,8 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	Y
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_20_TGACCA_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_20_TGACCA_L005_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/004/SRR6178304/SRR6178304_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/004/SRR6178304/SRR6178304_2.fastq.gz
 MOB	1	.	REL606	16990	IS150	1	3
 SNP	2	.	REL606	281923	T
 INS	3	.	REL606	473904	GC

diff --git a/LTEE-clone-curated/Ara-3_15000gen_ZDB445.gd b/LTEE-clone-curated/Ara-3_15000gen_ZDB445.gd
@@ -5,8 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	X
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_1_CAGATC_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_1_CAGATC_L005_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/001/SRR6178301/SRR6178301_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/001/SRR6178301/SRR6178301_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	281923	T

diff --git a/LTEE-clone-curated/Ara-3_25000gen_ZDB478.gd b/LTEE-clone-curated/Ara-3_25000gen_ZDB478.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	X
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_17_ACTGAT_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_17_ACTGAT_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_17_ACTGAT_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_17_ACTGAT_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/002/SRR6178302/SRR6178302_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/002/SRR6178302/SRR6178302_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_25000gen_ZDB486.gd b/LTEE-clone-curated/Ara-3_25000gen_ZDB486.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	Y
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_2_ACTTGA_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_2_ACTTGA_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_2_ACTTGA_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_2_ACTTGA_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/009/SRR6178309/SRR6178309_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/009/SRR6178309/SRR6178309_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_25000gen_ZDB488.gd b/LTEE-clone-curated/Ara-3_25000gen_ZDB488.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	Z
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_18_ATTCCT_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_18_ATTCCT_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_18_ATTCCT_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_18_ATTCCT_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/000/SRR6178310/SRR6178310_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/000/SRR6178310/SRR6178310_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_27000gen_ZDB309.gd b/LTEE-clone-curated/Ara-3_27000gen_ZDB309.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	X
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_3_GATCAG_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_3_GATCAG_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_3_GATCAG_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_3_GATCAG_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/007/SRR6178307/SRR6178307_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/007/SRR6178307/SRR6178307_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_27000gen_ZDB310.gd b/LTEE-clone-curated/Ara-3_27000gen_ZDB310.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	Y
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_4_TAGCTT_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_4_TAGCTT_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_4_TAGCTT_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_4_TAGCTT_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/008/SRR6178308/SRR6178308_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/008/SRR6178308/SRR6178308_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_27000gen_ZDB317.gd b/LTEE-clone-curated/Ara-3_27000gen_ZDB317.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	Z
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_5_GGCTAC_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_5_GGCTAC_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_5_GGCTAC_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_5_GGCTAC_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/005/SRR6178305/SRR6178305_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/005/SRR6178305/SRR6178305_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_28000gen_ZDB334.gd b/LTEE-clone-curated/Ara-3_28000gen_ZDB334.gd
@@ -5,8 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	X
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_6_CTTGTA_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_6_CTTGTA_L005_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/006/SRR6178306/SRR6178306_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/006/SRR6178306/SRR6178306_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_28000gen_ZDB339.gd b/LTEE-clone-curated/Ara-3_28000gen_ZDB339.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	Y
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_7_AGTCAA_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_7_AGTCAA_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_7_AGTCAA_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_7_AGTCAA_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/003/SRR6178303/SRR6178303_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/003/SRR6178303/SRR6178303_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_29000gen_ZDB13.gd b/LTEE-clone-curated/Ara-3_29000gen_ZDB13.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	X
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_8_AGTTCC_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_8_AGTTCC_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_8_AGTTCC_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_8_AGTTCC_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/000/SRR6178300/SRR6178300_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/000/SRR6178300/SRR6178300_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_29000gen_ZDB14.gd b/LTEE-clone-curated/Ara-3_29000gen_ZDB14.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	Y
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_9_ATGTCA_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_9_ATGTCA_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_9_ATGTCA_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_9_ATGTCA_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/007/SRR6178297/SRR6178297_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/007/SRR6178297/SRR6178297_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_30000gen_ZDB17.gd b/LTEE-clone-curated/Ara-3_30000gen_ZDB17.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	X
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_10_CCGTCC_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_10_CCGTCC_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_10_CCGTCC_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_10_CCGTCC_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/008/SRR6178298/SRR6178298_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/008/SRR6178298/SRR6178298_2.fastq.gz
 SNP	1	.	REL606	9972	G
 SNP	2	.	REL606	10563	A
 MOB	3	.	REL606	16990	IS150	1	3

diff --git a/LTEE-clone-curated/Ara-3_30000gen_ZDB18.gd b/LTEE-clone-curated/Ara-3_30000gen_ZDB18.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	Y
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_11_GTCCGC_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_11_GTCCGC_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_11_GTCCGC_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_11_GTCCGC_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/005/SRR6178295/SRR6178295_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/005/SRR6178295/SRR6178295_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_30500gen_ZDB19.gd b/LTEE-clone-curated/Ara-3_30500gen_ZDB19.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	X
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_12_GTGAAA_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_12_GTGAAA_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_12_GTGAAA_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_12_GTGAAA_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/006/SRR6178296/SRR6178296_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/006/SRR6178296/SRR6178296_2.fastq.gz
 SNP	1	.	REL606	9972	G
 MOB	2	.	REL606	16990	IS150	1	3
 SNP	3	.	REL606	81158	C

diff --git a/LTEE-clone-curated/Ara-3_30500gen_ZDB20.gd b/LTEE-clone-curated/Ara-3_30500gen_ZDB20.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	Y
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_13_GTGGCC_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_13_GTGGCC_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_13_GTGGCC_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_13_GTGGCC_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/003/SRR6178293/SRR6178293_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/003/SRR6178293/SRR6178293_2.fastq.gz
 SNP	1	.	REL606	9972	G
 SNP	2	.	REL606	10563	A
 MOB	3	.	REL606	16990	IS150	1	3

diff --git a/LTEE-clone-curated/Ara-3_31000gen_ZDB23.gd b/LTEE-clone-curated/Ara-3_31000gen_ZDB23.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	X
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_14_GTTTCG_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_14_GTTTCG_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_14_GTTTCG_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_14_GTTTCG_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/004/SRR6178294/SRR6178294_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/004/SRR6178294/SRR6178294_2.fastq.gz
 SNP	1	.	REL606	9972	G
 SNP	2	.	REL606	10563	A
 MOB	3	.	REL606	16990	IS150	1	3

diff --git a/LTEE-clone-curated/Ara-3_31500gen_ZDB25.gd b/LTEE-clone-curated/Ara-3_31500gen_ZDB25.gd
@@ -5,10 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	X
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_15_CGTACG_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_15_CGTACG_L005_R2_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_15_CGTACG_L006_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_15_CGTACG_L006_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/001/SRR6178291/SRR6178291_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/001/SRR6178291/SRR6178291_2.fastq.gz
 SNP	1	.	REL606	9972	G
 SNP	2	.	REL606	10563	A
 MOB	3	.	REL606	16990	IS150	1	3

diff --git a/LTEE-clone-curated/Ara-3_31500gen_ZDB27.gd b/LTEE-clone-curated/Ara-3_31500gen_ZDB27.gd
@@ -5,8 +5,8 @@
 #=TREATMENT	LTEE
 #=CLONE	Y
 #=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_16_GAGTGG_L005_R1_001.fastq.gz
-#=READSEQ	BarrickLab-Private:genomes/utexas_gsaf/Project_JA13577/EQ_16_GAGTGG_L005_R2_001.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/002/SRR6178292/SRR6178292_1.fastq.gz
+#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR617/002/SRR6178292/SRR6178292_2.fastq.gz
 SNP	1	.	REL606	9972	G
 SNP	2	.	REL606	10563	A
 MOB	3	.	REL606	16990	IS150	1	3