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* Bump y18n from 3.2.1 to 3.2.2 Bumps [y18n](https://github.com/yargs/y18n) from 3.2.1 to 3.2.2. - [Release notes](https://github.com/yargs/y18n/releases) - [Changelog](https://github.com/yargs/y18n/blob/master/CHANGELOG.md) - [Commits](https://github.com/yargs/y18n/commits) Signed-off-by: dependabot[bot] <[email protected]> * Add epoch based association clarification to documentation * .env file text and dark mode - Added dark mode to docs. - Added text about the .env file to documentation. - Clarified and made clearer the Django Q requirement for running jobs. * Changed VAST logo to icon format to not appear stretched * Apply suggestions from code review Co-authored-by: Andrew O'Brien <[email protected]> * Bump minimum mkdocs-material to 7.1.1 to ensure dark mode functionality * Updated CHANGELOG.md * Fixed CHANGELOG.md * Updated the docs layout, home page and FAQs - Enabled a new home page with wave design and announcement bar. - Changed layout to tabs and sections mode. - Changed location of some pages to other tab headings. - Added to FAQ section. * Updated CHANGELOG.md * Moved CSS to own stylesheet file - Fixed Safari image width * align bokehJS and bokeh python versions (#489) * align bokehJS and bokeh python versions Fixes #488 * added comment for bokeh to pyproject.toml * replace run config .py files with .yaml (#483) * replace run config .py files with .yaml Changes the pipeline run configuration file format to YAML. Implements a strict YAML validator. Closes #479. * update docs * updated CHANGELOG * Add pipeline/config.py to code reference nav. * Fix UI arrow file set to False. * Apply suggestions from code review Co-authored-by: Adam Stewart <[email protected]> * docs and docstring fixes * improve pipeline config error messages * background section always given in run config Run config template will now always contain the background section. If source monitoring is off, it will be commented out. * more specific run config validation messages * lock deps Co-authored-by: Adam Stewart <[email protected]> Co-authored-by: Adam Stewart <[email protected]> * Added announcement bar update step to making a release doc * Fix bokeh hover tool for lightcurve plots (#493) * fix missing lightcurve hovertool for non-variables * add default x-range of 1 day to lightcurve * updated CHANGELOG Fixes #490 * Added lightgallery support * Complete lightgallery support and more * Fixed docstring in config.py. * Updated all image captions. * Split off `DataTables` and `Tags and Favourites` to their own pages. * Expanded documentation of the documentation. * Enclosed all file examples in example admonition. * Renamed docs/quickstart -> docs/gettingstarted. * Added acknowledgements page. * Moved FAQs to before Reference. * Fixed MathJax and instant navigation. * fix broken cone search when coord = 0 (#501) * fix broken cone search when coord = 0 Fixes #495 * updated CHANGELOG * Change arrow file generation from vaex to pyarrow * Removed vaex dependency. * Removed UI warnings of arrow files not being generated when the run is processed via the website. * Updated docs. Fixes #497. * Minor fixes * added cos(dec) scaling to aladin lite footprint (#502) * Renamed FAQs -> FAQ * Added missing lightgallery css and js files * Added "Relations False Variability" section to association page * fix "back to top" TOC link The code to add a "back to top" link to the table of contents would fail with an error message on pages that don't have a TOC. The link was also never added if the user started on a page without a TOC as the mkdocs-material instant loading feature prevents JS from being executed when navigating between local docs pages. This patch ensures the link is always added. * Update docs/design/association.md Co-authored-by: Andrew O'Brien <[email protected]> * set default auto field model (#507) * set default auto field model Silences warnings introduced in Django 3.2. Closes #505. since this doesn't change the model, it only tells Django what it already is. * updated CHANGELOG * Add glob expression support to yaml run config (#504) * added support for globs in yaml run config Input files can be specified with one or more glob expressions. See docs for details. Resolved input file paths are matched and printed to the run log. Closes #485 updated changelog * fixed missing background images from run log * wrap config snippets in example admonishment Apply suggestions from code review. Co-authored-by: Adam Stewart <[email protected]> * add docstring and fix docs * fix outdated ref in tests docs Co-authored-by: Adam Stewart <[email protected]> * add tmate action debugging (#512) Enable by triggering a manual test run. See https://github.com/marketplace/actions/debugging-with-tmate * Revert "add tmate action debugging (#512)" (#513) This reverts commit 836e5a6. * Draw selected source components on top in JS9 (#508) * Draw selected source components on top in JS9 Fixes #200 no changes covered by tests * update changelog * changed to single JS9 shape layer JS9 only allows the top shape layer to respond to mouse events. Reverted back to a single layer with the shapes internally ordered. * Fix rogue relations (#510) - Fixed rogue relations - Fixed docstring typos. - Replace deprecated pandas kwarg - Update expected regression test data - Updated changelog to reflect test changes - Refactored test_most_relations() to sort by relations and RA. Co-authored-by: Andrew O'Brien <[email protected]> * Added created and updated dates to doc pages. (#514) * Added mkdocs-git-revision-date-localized-plugin to docs * Added date created to pages with override - Also changed docs workflow to fetch with fetch-depth: 0. * Updated CHANGELOG.md * Updated documentation docs page * Corrected tree on docs page * remove linebreaks from coordinates (#515) * remove linebreaks from coordinates Removes the excess whitespace between the lat and lon coordinates which was being included in the clipboard copy text. * pin djangorestframework-datatables to 0.5.1 (#517) * pin djangorestframework-datatables to 0.5.1 Later versions give the wrong total number of results during pagination. It only seems to affect cases when a different model is paginated, e.g. the list of measurements of a run returned by views.RunViewSet.measurements. * update doc related to default dev branch (#521) * update doc related to default dev branch Co-authored-by: Andrew O'Brien <[email protected]> * Fixed external search results table nan values (#523) Co-authored-by: Andrew O'Brien <[email protected]> * Updated mkdocs-material for native creation date support (#518) Co-authored-by: Andrew O'Brien <[email protected]> * removed actions ssh key forced-phot is now public and doesn't require authentication to clone * Updated source detail page layout (#526) * Updated source detail page layout - Added first detection JS9 at the top of the page. - Extended the external results row count. - Swap position of JS9 and aladin on measurement detail page to match. * Minor tidy of new lines - * fixed broken image detail link (#528) * fixed broken image detail link Fixes #527 * updated changelog * remove action git config to use ssh With no private repo dependencies, we can use the default anonymous https instead. * Bump lodash from 4.17.20 to 4.17.21 (#525) Bumps [lodash](https://github.com/lodash/lodash) from 4.17.20 to 4.17.21. - [Release notes](https://github.com/lodash/lodash/releases) - [Commits](lodash/lodash@4.17.20...4.17.21) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump hosted-git-info from 2.8.8 to 2.8.9 (#524) Bumps [hosted-git-info](https://github.com/npm/hosted-git-info) from 2.8.8 to 2.8.9. - [Release notes](https://github.com/npm/hosted-git-info/releases) - [Changelog](https://github.com/npm/hosted-git-info/blob/v2.8.9/CHANGELOG.md) - [Commits](npm/hosted-git-info@v2.8.8...v2.8.9) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Versioning (#532) * add versioning and updated release docs Closes #492 * add version to run pipeline log Closes #529 * updated migration docs We should no longer instruct devs to squash migrations since the pipeline models are mostly stable and large runs exist * exclude version file from docs * added discussions and defines issues and PRs * updated changelog * simplify git flow description * add version to page footer * updated npm deps; removed bootstrap (#533) * updated npm deps; removed bootstrap Updated npm deps according to semver rules. Removed bootstrap in favour of the version bundled with startbootstrap-sb-admin-2. * updated changelog * fixed breadcrumb truncation * Update homepage text (#534) * Update homepage text - Reference to documentation. - Removed reference to users not being able to run pipeline runs. - Added version to homepage. * Minor change to homepage text * added help and acknowledgement doc page (#535) * added help and acknowledgement doc page Updated acknowledgements Removed email link from docs footer Closes #522 * docs: fix email links, removed slack from footer * updated changelog * changed source naming convention (#536) * changed source naming convention Replaced ASKAP_<coord> naming convention with J<coord>. Coords have an RA precision of 1 and a Dec precision of 0, matching the convention used in the VAST-P1 paper. Sources can be searched by name with an optional "VAST" prefix which is silently removed before searching. Includes a data migration to update existing source names. * updated changelog Closes #530 * remove redundant types from docstrings Co-authored-by: Adam Stewart <[email protected]> * fixed formatting of examples in docstrings * define reverse data migration * Removed survey source models, commands and references (#538) * Removed survey source models, commands and references - Removed `Survey`, `SurveySource` and `SurveySourceQuerySet` from models. - Removed related fields from Source model and crossmatch relation. - Removed `importsurvey` command and docs page. - Updated schema diagrams. Non related minor fixes: - Updated command line docs page for `clearpiperun` command. - Added type annotation to `remove_forced_meas()` in `forced_extraction.py`. Fixes #462. * Added merged migration file * delete leftover refs to removed models * added required fields to SourceSerializer * Removed default_survey option from run config - Also removed `SURVEYS_WORKING_DIR` from settings and env. - Removed references from documentation. Co-authored-by: Andrew O'Brien <[email protected]> * prep for release v1.0.0 * updated release docs Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Adam Stewart <[email protected]> Co-authored-by: Shibli Saleheen <[email protected]>
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