Update app to run as a project

.babelrc

@@ -0,0 +1,7 @@
+{
+    "presets": [
+        [
+            "@babel/preset-env"
+        ]
+    ]
+}

.browserslistrc

@@ -0,0 +1,10 @@
+[production staging]
+>5%
+last 2 versions
+Firefox ESR
+not ie < 11
+
+[development]
+last 1 chrome version
+last 1 firefox version
+last 1 edge version

.coveragerc

@@ -0,0 +1,30 @@
+[run]
+source =
+    arches_for_science/
+
+omit =
+    */python?.?/*
+    */migrations/*
+    */settings*.py
+    */urls.py
+    */wsgi.py
+    */hosts.py
+    */celery.py
+    */__init__.py
+
+data_file = coverage/python/.coverage
+
+[report]
+show_missing = true
+
+exclude_lines =
+    pragma: no cover
+
+[html]
+directory = coverage/python/htmlcov
+
+[xml]
+output = coverage/python/coverage.xml
+
+[json]
+output = coverage/python/coverage.json

.gitattributes

@@ -0,0 +1,11 @@
+# Set the default behavior, in case people don't have core.autocrlf set.
+* text=auto
+
+# Known binary formats
+*.png binary
+*.jpg binary
+*.ico binary
+*.gif binary
+*.ttf binary
+*.woff binary
+*.woff2 binary

.github/actions/build-and-test-branch/action.yml

@@ -0,0 +1,120 @@
+name: 'Build and test branch'
+description: 'Builds and tests a branch'
+inputs: 
+  branch-type:
+    description: 'String denoting either `target` or `feature` branch'
+    required: true
+  project-name:
+    description: 'String denoting the name of the project'
+    required: true
+  secrets:
+    description: 'Secrets from main.yml as JSON'
+runs:
+  using: 'composite'
+  steps:
+    - name: Install Java, GDAL, and other system dependencies
+      run: |
+        sudo apt update
+        sudo apt-get install libxml2-dev libpq-dev openjdk-8-jdk libgdal-dev libxslt-dev
+        echo Postgres and ES dependencies installed
+      shell: bash
+
+    - name: Set up Elasticsearch
+      uses: ankane/setup-elasticsearch@v1
+      with:
+        elasticsearch-version: 8
+
+    - name: Install Python packages
+      run: |
+        python -m pip install --upgrade pip
+        pip install '.[dev]'
+        echo Python packages installed
+      shell: bash
+
+    - name: Install Arches applications
+      uses: ./.github/actions/install-arches-applications
+      with:
+        secrets: ${{ inputs.secrets }}
+
+    - name: Checkout into feature branch
+      if: inputs.branch-type == 'feature'
+      uses: actions/checkout@v4
+      with:
+        repository: ${{ github.repository }}
+        ref: ${{ github.ref }}
+        path: .
+
+    - name: Checkout into target branch
+      if: inputs.branch-type == 'target'
+      uses: actions/checkout@v4
+      with:
+        repository: ${{ github.repository }}
+        ref: ${{ github.event.pull_request.base.ref }}
+        path: .
+
+    - name: Install frontend dependencies
+      run: |
+          npm install
+      shell: bash
+
+    - name: Webpack frontend files
+      run: |
+          npm run build_test
+      shell: bash
+
+    - name: Check frontend formatting with prettier
+      run: |
+        npm run prettier:check
+      shell: bash
+
+    - name: Check backend formatting with black
+      run: |
+        black . --check --exclude=node_modules
+      shell: bash
+
+    - name: Check line endings
+      run: |
+        ! git ls-files --eol | grep 'w/crlf\|w/mixed'
+      shell: bash
+
+    - name: Run frontend tests
+      run: |
+        npm run vitest
+        mv coverage/frontend/coverage.xml ${{ inputs.branch-type }}_branch_frontend_coverage.xml
+      shell: bash
+
+    - name: Check for missing migrations
+      run: |
+        python manage.py makemigrations --check
+      shell: bash
+
+    - name: Ensure previous Python coverage data is erased
+      run: |
+        coverage erase
+      shell: bash
+
+    - name: Run Python unit tests
+      run: |
+        python -W default::DeprecationWarning -m coverage run manage.py test tests --settings="tests.test_settings"
+      shell: bash
+
+    - name: Generate Python report coverage
+      run: |
+        coverage report
+        coverage json
+        mv coverage/python/coverage.json ${{ inputs.branch-type }}_branch_python_coverage.json
+      shell: bash
+
+    - name: Upload frontend coverage report as artifact
+      uses: actions/upload-artifact@v4
+      with:
+        name: ${{ inputs.branch-type }}-branch-frontend-coverage-report
+        path: ${{ inputs.branch-type }}_branch_frontend_coverage.xml
+        overwrite: true
+
+    - name: Upload Python coverage report as artifact
+      uses: actions/upload-artifact@v4
+      with:
+        name: ${{ inputs.branch-type }}-branch-python-coverage-report
+        path: ${{ inputs.branch-type }}_branch_python_coverage.json
+        overwrite: true

.github/actions/install-arches-applications/action.yml

@@ -0,0 +1,29 @@
+name: 'Install Arches Applications'
+description: 'Manually edit this file to install all Arches Applications declared in settings.py, but not declared in `pyproject.toml`'
+inputs: 
+  secrets:
+    description: 'Secrets from main.yml as JSON'
+runs:
+  using: 'composite'
+  steps:
+
+    # Manually add any ARCHES_APPLICATIONS to this file if not already declared in `pyproject.toml`. 
+    # Below is a template for adding an application in a private repository. 
+    # Be sure to delete the `no-op step` if adding when updating this file.
+
+    - name: No-op step to maintain workflow structure
+      run: echo "No-op step"
+      shell: bash
+
+    # - name: Checkout ${my_arches_application_name}
+    #   uses: actions/checkout@v4
+    #   with:
+    #     repository: ${my_arches_application_repository}/${my_arches_application_name}
+    #     token: ${{ fromJSON(inputs.secrets).${my_github_personal_access_token} }}
+    #     path: ${my_arches_application_name}
+
+    # - name: Install ${my_arches_application_name}
+    #   run: |
+    #     pip install ./${my_arches_application_name}
+    #     echo ${my_arches_application_name} installed
+    #   shell: bash

.github/workflows/main.yml

@@ -63,7 +63,7 @@ jobs:
       - name: Check for missing migrations
         working-directory: afs
         run: |
-          PYTHONPATH="../arches" python manage.py makemigrations --check --settings=arches_for_science.test_settings
+          python manage.py makemigrations --check
 
       - name: Lint backend
         working-directory: afs
@@ -74,4 +74,4 @@ jobs:
       - name: Run afs unit tests
         working-directory: afs
         run: |
-          PYTHONPATH="../arches" python -W default::DeprecationWarning manage.py test --settings=arches_for_science.test_settings
+          python -W default::DeprecationWarning manage.py test tests --settings=tests.test_settings

.gitignore

@@ -1,29 +1,26 @@
 *.pyc
+*.log
 node_modules
-arches_for_science/media/build
-arches_for_science/logs/*.log
-arches_for_science/uploadedfiles
-arches_for_science/cantaloupe/*
+coverage/
+arches_for_science/logs
+arches_for_science/export_deliverables
 arches_for_science/ontologies/*.xml
-arches.log
-*.sublime*
+arches_for_science/cantaloupe/*
+arches_for_science/staticfiles
+arches_for_science/media/packages
+arches_for_science/media/build/
+arches_for_science/uploadedfiles/*
 arches_for_science/settings_local.py
-.DS_Store
-*.djcache
+webpack-stats.json
 .vscode/
-Procfile
 arches_for_science/settings_docker.py
-CACHE
-arches_for_science/export_deliverables/
-arches_for_science/archestemp/
-arches_for_science/staticfiles
-webpack/webpack-stats.json
-node_modules
-
-# Packaging
-*.egg-info/
-build/lib
+*.egg-info
 dist
-
-# Historical app name
+.DS_STORE
+arches_for_science/archestemp/
+CACHE
+.tsconfig-paths.json
+.frontend-configuration-settings.json
+#Historical app name
 afs/
+build/lib

.pre-commit-config.yaml

@@ -0,0 +1,30 @@
+---
+repos:
+
+  - repo: https://github.com/psf/black
+    rev: 24.4.2
+    hooks:
+      - id: black
+        args: [--quiet]
+        exclude: node_modules
+
+  - repo: local
+    hooks:
+      - id: prettier
+        name: prettier
+        entry: npm run prettier:fix
+        language: system
+        files: arches_for_science/src
+      - id: eslint
+        name: eslint
+        entry: npm run eslint:fix
+        language: system
+        files: arches_for_science/src
+      - id: typescript
+        name: typescript
+        entry: npm run ts:check
+        language: system
+        types: [
+          "ts",
+          "vue",
+        ]

.prettierrc

@@ -0,0 +1,4 @@
+{
+    "singleAttributePerLine": true,
+    "tabWidth": 4
+}

.stylelintrc.json

@@ -0,0 +1,3 @@
+{
+  "extends": "stylelint-config-standard"
+}