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[ENH] Proposition for adni-to-bids converter FMAP renaming #1190

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merged 20 commits into from
May 29, 2024
Merged

[ENH] Proposition for adni-to-bids converter FMAP renaming #1190

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283eafe
Preliminary cleaning
AliceJoubert May 16, 2024
c168a2e
Remove debugging prints
AliceJoubert May 17, 2024
2b09197
First bids cases handled
AliceJoubert May 22, 2024
653e73c
Working on case functions
AliceJoubert May 22, 2024
0285988
Cleaning before commit
AliceJoubert May 23, 2024
7e6c116
Remove commented parts
AliceJoubert May 23, 2024
340b5d3
proposition for case 3/1
AliceJoubert May 23, 2024
40b84d6
Add extension conversion for case3
AliceJoubert May 23, 2024
8b90186
Cleaning prints
AliceJoubert May 23, 2024
0367faa
Improve case3
AliceJoubert May 23, 2024
6398b6c
Update prints
AliceJoubert May 23, 2024
f915611
Changes as suggested
AliceJoubert May 23, 2024
c76c5f6
Changes as suggested 2
AliceJoubert May 24, 2024
42a6abe
Changes as suggested 3
AliceJoubert May 24, 2024
6e5be3e
Regex on extensions
AliceJoubert May 24, 2024
ed495e7
Changes according to suggestions
AliceJoubert May 24, 2024
2807cc0
Changes according to suggestions 2
AliceJoubert May 24, 2024
b3fadbf
Added unit tests
AliceJoubert May 27, 2024
f723599
Change unit tests upon suggestions
AliceJoubert May 29, 2024
7609b56
Fix reorganize function
AliceJoubert May 29, 2024
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2 changes: 1 addition & 1 deletion clinica/iotools/bids_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -881,7 +881,7 @@ def run_dcm2niix(

from clinica.utils.stream import cprint

cprint(f"Attempting to convert {output_fmt}.", lvl="info")
cprint(f"Attempting to convert {output_fmt}.", lvl="debug")
command = _build_dcm2niix_command(
input_dir, output_dir, output_fmt, compress, bids_sidecar
)
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