[TEST] Add non-regression tests to anat pipelines (#1428) #1296

	name: Instantiation Tests

	on:
	push:
	branches: ["dev", "maint-*"]
	pull_request:
	branches: ["dev", "maint-*"]

	permissions:
	contents: read

	concurrency:
	group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label \|\| github.head_ref \|\| github.ref }}'
	cancel-in-progress: true

	jobs:
	# test-instantiation-MacOS:
	# runs-on:
	# - self-hosted
	# - macOS
	# steps:
	# - uses: actions/checkout@v4
	# - name: Run instantiation tests
	# run: \|
	# make env.conda
	# source ~/miniconda3/etc/profile.d/conda.sh
	# conda activate "${{ github.workspace }}"/env
	# source "$(brew --prefix)/opt/modules/init/bash"
	# module load clinica.all
	# make install
	# cd test
	# poetry run pytest --verbose \
	# --working_directory=/Volumes/data/working_dir_mac \
	# --input_data_directory=/Volumes/data_ci \
	# --basetemp=/Volumes/data/tmp \
	# --junitxml=./test-reports/instantiation_mac.xml \
	# --disable-warnings \
	# ./instantiation/

	test-instantiation-Linux:
	runs-on:
	- self-hosted
	- Linux
	- test-runner
	steps:
	- uses: actions/checkout@v4
	- name: Run instantiation tests
	run: \|
	make env.conda
	source /builds/miniconda/etc/profile.d/conda.sh
	conda activate "${{ github.workspace }}"/env
	source /usr/local/Modules/init/profile.sh
	module load clinica.all
	make install
	cd test
	poetry run pytest --verbose \
	--working_directory=/mnt/data/ci/working_dir_linux \
	--input_data_directory=/mnt/data_ci \
	--basetemp=/mnt/data/ci/tmp \
	--junitxml=./test-reports/instantiation_linux.xml \
	--disable-warnings \
	./instantiation/

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