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Julia utilities to process and save results from BioMedical databases/APIs.
BioServices.jl (part of BioJulia) provides the basic interface to some of the APIs, while BioMedQuery helps parse and save results into MySQL, SQLite, DataFrames, CSV etc.
Supported APIs include:
National Library of Medicine (NLM)
- Entrez Programming Utilities (E-Utilities)
- Unified Medical Language System (UMLS)
- Clinical Trials (clinicaltrials.gov)
- MEDLINE (PubMed MEDLINE)
BioMedQuery is a registered package. To install the latest stable version, use the package manager.
using Pkg
Pkg.add("BioMedQuery")To use the latest development version:
using Pkg
Pkg.add("BioMedQuery#master")To checkout the latest development version:
using Pkg
Pkg.dev("BioMedQuery")BioMedQuery is tested against Julia 0.7 and current 1.X on
Linux, and OS X.
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