Update README.md

README.md

@@ -118,11 +118,10 @@ To view the summary information for a particular cluster or sample, enter "info
 
 *	If more than one sample is contained within the input file (s), the dendrogam will be displayed.  All output files generated by Proteinarium will be saved to the folder specified by the outputDirectory configuration option. By default, this goes to a folder called “Output” in the same directory as the Proteinarium.jar file. 
 
- **	**<projectName>_ClusterAnalyses.csv:** cluster analysis files
+  *	**<projectName>_ClusterAnalyses.csv:** cluster analysis files
 
- **	**<projectName>_Dendrogram.png:** dendrogram image
-
- **	**<projectName>_Dendrogram.txt:** representation of the dendrogram in Newick tree format 
+  *	**<projectName>_Dendrogram.png:** dendrogram image
+  *	**<projectName>_Dendrogram.txt:** representation of the dendrogram in Newick tree format 
 
 
 ## 3.	Viewing Clusters 
@@ -134,9 +133,9 @@ To view the summary information for a particular cluster or sample, enter "info
 *	Select either “View Cluster” or “Get Cluster Information”.  
 
 *	If “View Cluster” is selected, the corresponding the output files will be available in the \<outputDirectory\>/<cluster or sample ID\> folder. And the following files are generated:  
- **	**<cluster or sample ID>_Dendrogram.txt**
+  *	**<cluster or sample ID>_Dendrogram.txt**
 
- **	For each of the five possible output networks--Group 1, Group 2, [Group 1 + Group 2], [Group 1 - Group 2], [Group 2 - Group 1], three files are generated to summarize that network. For example:
+  *	For each of the five possible output networks--Group 1, Group 2, [Group 1 + Group 2], [Group 1 - Group 2], [Group 2 - Group 1], three files are generated to summarize that network. For example:
 
    1.	**<cluster or sample ID>_Group1_GeneSet.txt:** list of genes in the network and information about which input set they originated from (i.e. from Group 1, Group 2, or imputed from the interactome) and on how many samples the gene was found