Update numpy requirement from <=2.2.0 to <=2.2.1 (#232)

* Update numpy requirement from <=2.2.0 to <=2.2.1

Updates the requirements on [numpy](https://github.com/numpy/numpy) to permit the latest version.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v0.2.0...v2.2.1)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>

* Remove use of private variable `_PREFIX`

* Revert to `ubuntu-22.04` for time being

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Alex Lancaster <[email protected]>

.github/workflows/codeql.yml

@@ -27,7 +27,7 @@ jobs:
     #   - https://gh.io/supported-runners-and-hardware-resources
     #   - https://gh.io/using-larger-runners
     # Consider using larger runners for possible analysis time improvements.
-    runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
+    runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-22.04' }}
     timeout-minutes: ${{ (matrix.language == 'swift' && 120) || 360 }}
     permissions:
       # required for all workflows

setup.py

@@ -41,7 +41,7 @@
 from setuptools.command.build_py import build_py as _build_py
 from setuptools.command.install import install as _install
 from distutils.command import clean
-from sysconfig import _PREFIX, get_config_vars, get_config_var
+from sysconfig import get_config_vars, get_config_var
 from src.PyPop import __pkgname__, __version_scheme__
 
 src_dir = "src"
@@ -66,8 +66,9 @@ def run(self):
         clean.clean.run(self)
 
 # look for libraries in _PREFIX
-library_dirs = [os.path.join(_PREFIX, "lib")]
-include_dirs = [os.path.join(_PREFIX, "include")]
+prefix = get_config_var('prefix')
+library_dirs = [os.path.join(prefix, "lib")]
+include_dirs = [os.path.join(prefix, "include")]
 # also look in LIBRARY_PATH, CPATH (needed for macports etc.)
 if "LIBRARY_PATH" in os.environ:
     library_dirs += os.environ["LIBRARY_PATH"].rstrip(os.pathsep).split(os.pathsep)
@@ -280,7 +281,7 @@ def run(self):
        packages = ["PyPop", "PyPop.xslt"],
        package_data = {"PyPop.xslt": xslt_data_file_paths,
                        "PyPop": citation_data_file_paths},
-       install_requires = ["numpy <= 2.2.0",
+       install_requires = ["numpy <= 2.2.1",
                            "lxml <= 5.3.0",
                            "importlib-resources; python_version <= '3.8'",
                            "importlib-metadata; python_version <= '3.8'"],