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Prep for 0.4.0-rc2 #206

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merged 3 commits into from
Oct 29, 2024
Merged

Prep for 0.4.0-rc2 #206

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1e53dd0
Prep for 0.4.0-rc2
aliddell Aug 21, 2024
8f9fedd
ignore all coverage files
aliddell Aug 22, 2024
8e758c5
Remove check against norm of difference of matrices (bad test)
aliddell Aug 22, 2024
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2 changes: 1 addition & 1 deletion .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,7 @@ pip-selfcheck.json
# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage*
.cache
nosetests.xml
coverage.xml
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2 changes: 1 addition & 1 deletion Cargo.toml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
[package]
name = "acquire-imaging"
authors = ["Nathan Clack <[email protected]>"]
version = "0.4.0-rc1"
version = "0.4.0-rc2"
edition = "2021"

[lib]
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2 changes: 1 addition & 1 deletion acquire-common
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Submodule acquire-common updated 7 files
+85 −30 acquire-driver-common/src/simcams/simulated.camera.c
+1 −0 acquire-driver-common/tests/integration/CMakeLists.txt
+202 −0 acquire-driver-common/tests/integration/simcam-will-not-stall.cpp
+3 −3 acquire-driver-common/tests/integration/switch-storage-identifier.cpp
+8 −9 acquire-video-runtime/src/runtime/channel.c
+1 −0 acquire-video-runtime/tests/CMakeLists.txt
+178 −0 acquire-video-runtime/tests/sleep-while-inspecting.cpp
2 changes: 1 addition & 1 deletion drivers.json
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
{
"acquire-driver-zarr": "0.1.12",
"acquire-driver-zarr": "0.1.13",
"acquire-driver-egrabber": "0.1.5",
"acquire-driver-hdcam": "0.1.9",
"acquire-driver-spinnaker": "0.1.1",
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12 changes: 1 addition & 11 deletions tests/test_zarr.py
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Original file line number Diff line number Diff line change
Expand Up @@ -5,15 +5,13 @@
from typing import Optional

import dotenv
import numpy as np
import pytest
import s3fs
import zarr
from dask import array as da
from numcodecs import blosc as blosc
from ome_zarr.io import parse_url
from ome_zarr.reader import Reader
from skimage.transform import downscale_local_mean

import acquire
from acquire import Runtime, DeviceKind
Expand Down Expand Up @@ -420,15 +418,7 @@ def test_write_zarr_multiscale(
data = [
da.from_zarr(uri, component=str(i)) for i in range(len(zgroup.data))
]
assert len(data) == 3

image = data[0][0, :, :].compute() # convert dask array to numpy array

for d in data:
assert (
np.linalg.norm(image - d[0, :, :].compute()) == 0
) # validate against the same method from scikit-image
image = downscale_local_mean(image, (2, 2)).astype(np.uint8)
assert len(data) == 3 # 3 layers
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@pytest.mark.parametrize(
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