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[EEG] EEG uploader module #8409

Merged
merged 7 commits into from
Apr 5, 2023
Merged

[EEG] EEG uploader module #8409

merged 7 commits into from
Apr 5, 2023

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laemtl
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@laemtl laemtl commented Feb 24, 2023

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@laemtl laemtl added the State: Needs work PR awaiting additional work by the author to proceed label Feb 24, 2023
@laemtl laemtl force-pushed the EEG-uploader branch 2 times, most recently from 28dd3c2 to 66babb4 Compare February 24, 2023 07:51
@laemtl laemtl added this to the 25.0.0 milestone Feb 28, 2023
@laemtl laemtl self-assigned this Mar 7, 2023
@laemtl laemtl force-pushed the EEG-uploader branch 3 times, most recently from 01fc09d to 285f5c3 Compare March 22, 2023 17:55
@laemtl laemtl removed the State: Needs work PR awaiting additional work by the author to proceed label Mar 22, 2023
@laemtl laemtl requested a review from jeffersoncasimir March 22, 2023 18:23
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laemtl commented Mar 22, 2023

@jeffersoncasimir, ready for testing

@laemtl laemtl assigned jeffersoncasimir and unassigned laemtl Mar 22, 2023
@laemtl laemtl force-pushed the EEG-uploader branch 2 times, most recently from 6589b7b to 3e98457 Compare March 23, 2023 06:53
jeffersoncasimir
jeffersoncasimir approved these changes Mar 28, 2023
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I successfully uploaded a recording to a candidate. Works as intended.

Review notes:

  • The uploaded file exceeds the upload_max_filesize directive in php.ini was properly reported on the front-end but an error that came before, which was due to the post_max_size being too low, reported as a generic failure on the front-end but was adequately reported in the server log.

  • After uploading successfully, the only way to upload again or to have an updated view of the browser is by refreshing the page.

  • Did you mean to hard-code the notification e-mails here?

@jeffersoncasimir jeffersoncasimir added the Passed manual tests PR has been successfully tested by at least one peer label Mar 28, 2023
@laemtl laemtl added State: Needs work PR awaiting additional work by the author to proceed and removed State: Needs work PR awaiting additional work by the author to proceed labels Mar 30, 2023
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laemtl commented Mar 30, 2023 •
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Thanks @jeffersoncasimir for this very good review, I addressed your comments.
To test the notification system, you can assign yourself the permission monitor_eeg_uploads.

@laemtl laemtl requested a review from jeffersoncasimir March 30, 2023 16:48
@laemtl laemtl added the State: Needs work PR awaiting additional work by the author to proceed label Mar 30, 2023
@laemtl laemtl removed the State: Needs work PR awaiting additional work by the author to proceed label Mar 30, 2023
jeffersoncasimir
jeffersoncasimir requested changes Mar 31, 2023
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Tested the new changes and the only issue remaining is that the new e-mail template was not pushed to the PR.

This actually does not trigger an error on the front-end (no success/fail modal, hangs forever after 100%, unobvious 500 response) nor the server log (nothing unusual reported). The file does still get uploaded.

I have also tested it with success by replacing the e-mail template reference with an existing one.

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laemtl commented Mar 31, 2023

Oups, thought I did. Solved :)

@laemtl laemtl requested a review from jeffersoncasimir March 31, 2023 16:45
@laemtl laemtl added the State: Needs rebase PR that needs to be rebased to proceed (conflicts, wrong branch...) label Apr 4, 2023
@laemtl laemtl changed the base branch from main to 25.0-release April 4, 2023 15:10
@laemtl laemtl removed the State: Needs rebase PR that needs to be rebased to proceed (conflicts, wrong branch...) label Apr 4, 2023
driusan
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In addition to the couple comments, this seems to be a new module, in which case it's missing the standardized README that every module in LORIS is supposed to have.

modules/electrophysiology_uploader/php/upload.class.inc Outdated Show resolved Hide resolved
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driusan
driusan reviewed Apr 4, 2023
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modules/electrophysiology_uploader/php/upload.class.inc
'UploadUrl' => null,
];
foreach ($emails as $email) {
\Email::send(
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Shouldn't this be using the notifier class? @ridz1208 Is there a difference between Notify and Email::send?

@laemtl laemtl requested a review from driusan April 4, 2023 18:44
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This is still missing a standardized README for the module.

@laemtl laemtl requested a review from driusan April 4, 2023 19:52
driusan
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modules/electrophysiology_uploader/README.md Outdated Show resolved Hide resolved
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modules/electrophysiology_uploader/README.md
**Note**: Uploaded recordings are erased from the
`EEGUploadIncomingPath` following a successful archival and insertion
through the LORIS-MRI pipeline.

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Are there any interactions with other modules / LORIS that need to be defined? EEG Browser presumably?

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No, no other module interactions yet.

@laemtl laemtl requested a review from driusan April 4, 2023 20:26
@driusan driusan merged commit 983a0cf into aces:25.0-release Apr 5, 2023
cmadjar pushed a commit to cmadjar/Loris that referenced this pull request Apr 11, 2023
@laemtl @cmadjar
[EEG] EEG uploader module (aces#8409)
9bcd3b8 
Add new module intended to allow users to upload and browse electrophysiology files.
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@jeffersoncasimir jeffersoncasimir jeffersoncasimir approved these changes

@driusan driusan Awaiting requested review from driusan

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