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LORIS-MRI Release v24.1.11
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@cmadjar cmadjar released this 20 Jun 01:41
· 15 commits to 24.1-release since this release
v24.1.11
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This is a bug fix release for LORIS-MRI version 24.1. It resolves the following bugs:

General python code fixes

  • fix blake2b and md5 hashing algorithm used to generate files' hashes stored in the database (#916)

Python dcm2bids insertion pipeline

  • print proper error message when running dicom_archive_validation.py on an UploadID that does not exist in the database (#962)
  • print proper error message when running dicom_archive_validation.py on an improper UploadID/ArchiveLocation combination (A.K.A. the ArchiveLocation is not linked to the UploadID provided as input to the script and vice versa) (#963)
  • fix handling of options provided to the script run_push_imaging_files_to_s3_pipeline .py (#964)
  • better handle bad configuration of S3 in database_config.py and Config module (#965)

BIDS import pipeline

  • add support for using CandID in the BIDS subject's IDs that is imported (#912)
  • add CandID/PSCID validation in the folder name if the flag -i is used when importing BIDS data (#912)

New script

  • addition of a script that will extract an electrophysiology upload in the assembly_bids directory alongside the MRI data imported by the dcm2bids pipeline (#970)

Caveat for existing projects

  • Since the hashes were not created properly by the python pipelines (A.K.A. bids_import.py and dcm2bids pipelines), the hashes stored in the database are incorrect and need to be corrected. In order to do that, a script has been made available in the tools directory. To correct all the incorrect MD5 and BLAKE2b hashes, run the following command:
python tools/correct_blake2b_and_md5_hashes_in_database.py -p database_config.py
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