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Fix handling of options provided to the push to S3 script #964

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Apr 27, 2023
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Fix handling of options provided to the push to S3 script #964

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6 changes: 2 additions & 4 deletions python/run_push_imaging_files_to_s3_pipeline.py
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Original file line number Diff line number Diff line change
Expand Up @@ -24,27 +24,25 @@ def main():
" PUSH IMAGING FILES TO AMAZON S3 BUCKET SCRIPT\n"
"********************************************************************\n"
"The program gets all the files associated to an upload ID and push them to an Amazon S3 bucket.\n\n"
# TODO more description on how the script works

"usage : run_push_imaging_files_to_s3_pipeline.py -p <profile> -u <upload_id> ...\n\n"

"options: \n"
"\t-p, --profile : Name of the python database config file in dicom-archive/.loris_mri\n"
"\t-t, --tarchive_path : Absolute path to the DICOM archive to process\n"
"\t-u, --upload_id : ID of the upload (from mri_upload) related to the DICOM archive to process\n"
"\t-v, --verbose : If set, be verbose\n\n"

"required options are: \n"
"\t--profile\n"
"\t--tarchive_path OR --upload_id\n"
"\t--upload_id\n"
)

options_dict = {
"profile": {
"value": None, "required": True, "expect_arg": True, "short_opt": "p", "is_path": False
},
"upload_id": {
"value": None, "required": False, "expect_arg": True, "short_opt": "u", "is_path": False
"value": None, "required": True, "expect_arg": True, "short_opt": "u", "is_path": False
},
"verbose": {
"value": False, "required": False, "expect_arg": False, "short_opt": "v", "is_path": False
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