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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,37 @@ | ||
| name: test base sktime | ||
| description: run unit tests on base interface of sktime framework | ||
| inputs: | ||
| python-version-identifier: | ||
| description: python version to run tests | ||
| required: true | ||
| sub-sample-estimators: | ||
| description: test only subset of estimators | ||
| required: true | ||
| test-affected-estimators: | ||
| description: test only modified estimators | ||
| required: true | ||
| runs: | ||
| using: composite | ||
| steps: | ||
| - name: repository checkout step | ||
| uses: actions/checkout@v4 | ||
| - name: update tracking reference step | ||
| run: git remote set-branches origin main | ||
| shell: bash | ||
| - name: shallow clone update step | ||
| run: git fetch --depth 1 | ||
| shell: bash | ||
| - name: python environment step | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: ${{ inputs.python-version-identifier }} | ||
| - name: dependencies installation step | ||
| run: python3 -m pip install .[tests] | ||
| shell: bash | ||
| - name: unit test step | ||
| run: python3 -m pytest sktime/base --matrixdesign ${{ inputs.sub-sample-estimators }} --only_changed_modules ${{ inputs.test-affected-estimators }} | ||
| shell: bash | ||
| - name: test coverage step | ||
| uses: codecov/codecov-action@v3 | ||
| with: | ||
| flags: ${{ inputs.python-version-identifier }},base |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,40 @@ | ||
| name: test specific sktime component | ||
| description: run unit tests on individual component of sktime framework | ||
| inputs: | ||
| sktime-component-identifier: | ||
| description: name of sktime component | ||
| required: true | ||
| python-version-identifier: | ||
| description: python version to run tests | ||
| required: true | ||
| sub-sample-estimators: | ||
| description: test only subset of estimators | ||
| required: true | ||
| test-affected-estimators: | ||
| description: test only modified estimators | ||
| required: true | ||
| runs: | ||
| using: composite | ||
| steps: | ||
| - name: repository checkout step | ||
| uses: actions/checkout@v4 | ||
| - name: update tracking reference step | ||
| run: git remote set-branches origin main | ||
| shell: bash | ||
| - name: shallow clone update step | ||
| run: git fetch --depth 1 | ||
| shell: bash | ||
| - name: python environment step | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: ${{ inputs.python-version-identifier }} | ||
| - name: dependencies installation step | ||
| run: python3 -m pip install .[${{ inputs.sktime-component-identifier }},tests] | ||
| shell: bash | ||
| - name: unit test step | ||
| run: python3 -m pytest sktime/${{ inputs.sktime-component-identifier }} --matrixdesign ${{ inputs.sub-sample-estimators }} --only_changed_modules ${{ inputs.test-affected-estimators }} | ||
| shell: bash | ||
| - name: test coverage step | ||
| uses: codecov/codecov-action@v3 | ||
| with: | ||
| flags: ${{ inputs.python-version-identifier }},${{ inputs.sktime-component-identifier }} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,21 @@ | ||
| name: test specific sktime extra | ||
| description: install individual extra of sktime | ||
| inputs: | ||
| sktime-extra-identifier: | ||
| description: name of sktime extra | ||
| required: true | ||
| python-version-identifier: | ||
| description: python version to run tests | ||
| required: true | ||
| runs: | ||
| using: composite | ||
| steps: | ||
| - name: repository checkout step | ||
| uses: actions/checkout@v4 | ||
| - name: python environment step | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: ${{ inputs.python-version-identifier }} | ||
| - name: extra installation step | ||
| run: python3 -m pip install .[${{ inputs.sktime-extra-identifier }}] | ||
| shell: bash |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,86 @@ | ||
| name: test all workflow | ||
| on: | ||
| schedule: | ||
| - cron: 0 0 * * 0 | ||
| workflow_dispatch: | ||
| jobs: | ||
| code_quality: | ||
| name: validate code quality | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: repository checkout step | ||
| uses: actions/checkout@v4 | ||
| - name: python environment step | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: "3.8" | ||
| - name: install pre-commit | ||
| run: python3 -m pip install pre-commit | ||
| - name: run pre-commit hooks on all files | ||
| run: pre-commit run --color always --all-files --show-diff-on-failure | ||
| - name: check missing __init__ files | ||
| run: build_tools/fail_on_missing_init_files.sh | ||
| shell: bash | ||
| test_base: | ||
| needs: code_quality | ||
| name: test base framework | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| python-version: | ||
| - "3.8" | ||
| - "3.9" | ||
| - "3.10" | ||
| - "3.11" | ||
| - "3.12" | ||
| operating-system: | ||
| - macos-latest | ||
| - ubuntu-latest | ||
| - windows-latest | ||
| runs-on: ${{ matrix.operating-system }} | ||
| steps: | ||
| - name: checkout pull request branch | ||
| uses: actions/checkout@v4 | ||
| - name: run tests on python ${{ matrix.python-version }} | ||
| uses: ./.github/actions/test-base | ||
| with: | ||
| python-version-identifier: ${{ matrix.python-version }} | ||
| sub-sample-estimators: "False" | ||
| test-affected-estimators: "False" | ||
| test_components: | ||
| needs: code_quality | ||
| name: test individual components | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| python-version: | ||
| - "3.8" | ||
| - "3.9" | ||
| - "3.10" | ||
| - "3.11" | ||
| - "3.12" | ||
| operating-system: | ||
| - macos-latest | ||
| - ubuntu-latest | ||
| - windows-latest | ||
| sktime-component: | ||
| - alignment | ||
| - annotation | ||
| - classification | ||
| - clustering | ||
| - forecasting | ||
| - networks | ||
| - param_est | ||
| - regression | ||
| - transformations | ||
| runs-on: ${{ matrix.operating-system }} | ||
| steps: | ||
| - name: checkout pull request branch | ||
| uses: actions/checkout@v4 | ||
| - name: run tests for component ${{ matrix.sktime-component }} on python ${{ matrix.python-version }} | ||
| uses: ./.github/actions/test-component | ||
| with: | ||
| sktime-component-identifier: ${{ matrix.sktime-component }} | ||
| python-version-identifier: ${{ matrix.python-version }} | ||
| sub-sample-estimators: "False" | ||
| test-affected-estimators: "False" |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| name: test base workflow | ||
| on: | ||
| workflow_call: | ||
| jobs: | ||
| detect: | ||
| name: check for changes in base framework | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| pull-requests: read | ||
| outputs: | ||
| base: ${{ steps.filter.outputs.base }} | ||
| steps: | ||
| - uses: dorny/paths-filter@v2 | ||
| id: filter | ||
| with: | ||
| filters: | | ||
| base: | ||
| - sktime/base/** | ||
| test: | ||
| needs: detect | ||
| name: test base framework | ||
| if: ${{ needs.detect.outputs.base == 'true' }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| python-version: | ||
| - "3.8" | ||
| - "3.9" | ||
| - "3.10" | ||
| - "3.11" | ||
| - "3.12" | ||
| operating-system: | ||
| - macos-latest | ||
| - ubuntu-latest | ||
| - windows-latest | ||
| runs-on: ${{ matrix.operating-system }} | ||
| steps: | ||
| - name: checkout pull request branch | ||
| uses: actions/checkout@v4 | ||
| - name: run tests on python ${{ matrix.python-version }} | ||
| uses: ./.github/actions/test-base | ||
| with: | ||
| python-version-identifier: ${{ matrix.python-version }} | ||
| sub-sample-estimators: "True" | ||
| test-affected-estimators: "True" |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| name: validate code quality workflow | ||
| on: | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| jobs: | ||
| code_quality: | ||
| name: test code quality | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: repository checkout step | ||
| uses: actions/checkout@v4 | ||
| - name: python environment step | ||
| uses: actions/setup-python@v4 | ||
| with: | ||
| python-version: "3.8" | ||
| - name: install pre-commit | ||
| run: python3 -m pip install pre-commit | ||
| - id: changed-files | ||
| name: identify modified files | ||
| uses: tj-actions/changed-files@v40 | ||
| - name: run pre-commit hooks on modified files | ||
| run: pre-commit run --color always --files ${{ steps.changed-files.outputs.all_changed_files }} --show-diff-on-failure | ||
| - name: check missing __init__ files | ||
| run: build_tools/fail_on_missing_init_files.sh | ||
| shell: bash | ||
| unit_test_base: | ||
| needs: code_quality | ||
| name: run unit tests for base framework | ||
| uses: ./.github/workflows/test_base.yml | ||
| unit_test_components: | ||
| needs: code_quality | ||
| name: run unit tests for individual components | ||
| uses: ./.github/workflows/test_components.yml |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,62 @@ | ||
| name: test individual components workflow | ||
| on: | ||
| workflow_call: | ||
| jobs: | ||
| detect: | ||
| name: check for changes in individual components | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| pull-requests: read | ||
| outputs: | ||
| components: ${{ steps.filter.outputs.changes }} | ||
| steps: | ||
| - uses: dorny/paths-filter@v2 | ||
| id: filter | ||
| with: | ||
| filters: | | ||
| alignment: | ||
| - sktime/alignment/** | ||
| annotation: | ||
| - sktime/annotation/** | ||
| classification: | ||
| - sktime/classification/** | ||
| clustering: | ||
| - sktime/clustering/** | ||
| forecasting: | ||
| - sktime/forecasting/** | ||
| networks: | ||
| - sktime/networks/** | ||
| param_est: | ||
| - sktime/param_est/** | ||
| regression: | ||
| - sktime/regression/** | ||
| transformations: | ||
| - sktime/transformations/** | ||
| test: | ||
| needs: detect | ||
| name: test specific component | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| python-version: | ||
| - "3.8" | ||
| - "3.9" | ||
| - "3.10" | ||
| - "3.11" | ||
| - "3.12" | ||
| operating-system: | ||
| - macos-latest | ||
| - ubuntu-latest | ||
| - windows-latest | ||
| sktime-component: ${{ fromJSON(needs.detect.outputs.components) }} | ||
| runs-on: ${{ matrix.operating-system }} | ||
| steps: | ||
| - name: checkout pull request branch | ||
| uses: actions/checkout@v4 | ||
| - name: run tests for component ${{ matrix.sktime-component }} on python ${{ matrix.python-version }} | ||
| uses: ./.github/actions/test-component | ||
| with: | ||
| sktime-component-identifier: ${{ matrix.sktime-component }} | ||
| python-version-identifier: ${{ matrix.python-version }} | ||
| sub-sample-estimators: "True" | ||
| test-affected-estimators: "True" |
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