created new manual

VanLoo-lab · Jun 20, 2016 · 6d40e69 · 6d40e69
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Showing 6 changed files with 15 additions and 5 deletions.
diff --git a/ASCAT-manual.pdf b/ASCAT-manual.pdf
diff --git a/ASCAT/DESCRIPTION b/ASCAT/DESCRIPTION
@@ -15,7 +15,11 @@ Description: R package of ASCAT as published in http://www.ncbi.nlm.nih.gov/
     pubmed/20837533
 Depends:
     R (>= 2.13.0),
-    RColorBrewer
+    RColorBrewer,
+    grDevices,
+    graphics,
+    stats,
+    utils
 License: GPL-3
 LazyLoad: yes
 RoxygenNote: 5.0.1
diff --git a/ASCAT/NAMESPACE b/ASCAT/NAMESPACE
@@ -15,3 +15,10 @@ export(base.gw.plot)
 export(make_segments)
 export(runASCAT)
 import(RColorBrewer)
+importFrom("grDevices", "adjustcolor", "colorRampPalette", "dev.new",
+             "dev.off", "pdf", "png")
+importFrom("graphics", "abline", "axis", "image", "par", "plot",
+             "points", "rect", "text")
+importFrom("stats", "complete.cases", "cor", "lm", "mad", "median",
+             "na.omit", "runmed", "var")
+importFrom("utils", "read.table", "write.table")
diff --git a/ASCAT/man/ascat.aspcf.Rd b/ASCAT/man/ascat.aspcf.Rd
diff --git a/ASCAT/man/ascat.runAscat.Rd b/ASCAT/man/ascat.runAscat.Rd
diff --git a/ASCAT/man/runASCAT.Rd b/ASCAT/man/runASCAT.Rd