adapted manual

VanLoo-lab · Apr 6, 2017 · 5c12d13 · 5c12d13
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Showing 6 changed files with 7 additions and 9 deletions.
diff --git a/ASCAT-manual.pdf b/ASCAT-manual.pdf
diff --git a/ASCAT/DESCRIPTION b/ASCAT/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: ASCAT
 Type: Package
 Title: Allele-Specific Copy Number Analysis of Tumours
-Version: 2.4.3
-Date: 2016-06-20
+Version: 2.4.4
+Date: 2017-04-06
 Authors@R: c(person("Peter", "Van Loo", role=c("aut","cre"), email="[email protected]"),
     person("Gro", "Nielsen", role="ctb"),
     person("Jiqiu","Cheng", role="ctb"),

diff --git a/ASCAT/NAMESPACE b/ASCAT/NAMESPACE
@@ -15,10 +15,7 @@ export(base.gw.plot)
 export(make_segments)
 export(runASCAT)
 import(RColorBrewer)
-importFrom("grDevices", "adjustcolor", "colorRampPalette", "dev.new",
-             "dev.off", "pdf", "png")
-importFrom("graphics", "abline", "axis", "image", "par", "plot",
-             "points", "rect", "text")
-importFrom("stats", "complete.cases", "cor", "lm", "mad", "median",
-             "na.omit", "runmed", "var")
+importFrom("grDevices", "adjustcolor", "colorRampPalette", "dev.new","dev.off", "pdf", "png")
+importFrom("graphics", "abline", "axis", "image", "par", "plot","points", "rect", "text")
+importFrom("stats", "complete.cases", "cor", "lm", "mad", "median","na.omit", "runmed", "var")
 importFrom("utils", "read.table", "write.table")
diff --git a/ASCAT/R/ascat.R b/ASCAT/R/ascat.R
@@ -1,4 +1,4 @@
-# ASCAT 2.4.3
+# ASCAT 2.4.4
 # author: Peter Van Loo
 # PCF and ASPCF: Gro Nilsen
 # GC correction: Jiqiu Cheng

diff --git a/ASCAT/man/ascat.predictGermlineGenotypes.Rd b/ASCAT/man/ascat.predictGermlineGenotypes.Rd
diff --git a/ASCAT_2.4.3.tar.gz b/ASCAT_2.4.3.tar.gz