Fixed bug with real coordinates when computing the tile order. #4
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joe-maley
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Nov 14, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. This is marked as a work-in-progress because it is untested, and will not be checked in until tested.
joe-maley
pushed a commit
that referenced
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Nov 14, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow. This is marked as a work-in-progress because it is untested, and will not be checked in until tested.
joe-maley
pushed a commit
that referenced
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Nov 14, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 14, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
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Nov 15, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 15, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 15, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 15, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 18, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 18, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 18, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 18, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 18, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 19, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
joe-maley
pushed a commit
that referenced
this pull request
Nov 19, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow.
ihnorton
pushed a commit
that referenced
this pull request
Dec 4, 2019
This change ensures that if query_deserialize() returns a non-OK status, both 'copy_state' and 'query' args are in the same state that they entered the routine in. Changes: 1. The existing query_deserialize() implementation has been moved to do_query_deserialize(). 2. query_deserialize() maintains the same interface. 3. query_deserialize() makes a copy of the 'copy_state'. 4. query_deserialize() serializes 'query' into a backup buffer. 5. query_deserialize() invokes do_query_deserialize(). If it fails, query_deserialize() will reset 'copy_state' to the copy in change #3 and it will deserialize the backup buffer from change #4 into 'query. 6. Reverts the logical changes in #1424 because we now handle all deserialization failures, not just user buffer overflow. (cherry picked from commit f41fd6b #1437)
joe-maley
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May 3, 2021
Fixes #2201 This patch introduces a global lock on the `S3Client` constructor to prevent the following race reported from TSAN: ``` WARNING: ThreadSanitizer: data race (pid=12) Write of size 8 at 0x7fe93658a1b0 by thread T16 (mutexes: write M144250874682678808, write M150443169551677688): #0 cJSON_ParseWithOpts external/aws/aws-cpp-sdk-core/source/external/cjson/cJSON.cpp:1006 (libexternal_Saws_Slibaws.so+0x299bef) #1 Aws::Utils::Json::JsonValue::JsonValue(std::__cxx11::basic_string<char, std::char_traits<char>, Aws::Allocator<char> > const&) external/aws/aws-cpp-sdk-core/source/utils/json/JsonSerializer.cpp:39 (libexternal_Saws_Slibaws.so+0x32d09c) #2 Aws::Config::EC2InstanceProfileConfigLoader::LoadInternal() external/aws/aws-cpp-sdk-core/source/config/AWSProfileConfigLoader.cpp:341 (libexternal_Saws_Slibaws.so+0x286d88) #3 Aws::Config::AWSProfileConfigLoader::Load() external/aws/aws-cpp-sdk-core/source/config/AWSProfileConfigLoader.cpp:47 (libexternal_Saws_Slibaws.so+0x282b4f) #4 Aws::Auth::InstanceProfileCredentialsProvider::Reload() external/aws/aws-cpp-sdk-core/source/auth/AWSCredentialsProvider.cpp:265 (libexternal_Saws_Slibaws.so+0x235987) #5 Aws::Auth::InstanceProfileCredentialsProvider::RefreshIfExpired() external/aws/aws-cpp-sdk-core/source/auth/AWSCredentialsProvider.cpp:283 (libexternal_Saws_Slibaws.so+0x23613b) #6 Aws::Auth::InstanceProfileCredentialsProvider::GetAWSCredentials() external/aws/aws-cpp-sdk-core/source/auth/AWSCredentialsProvider.cpp:250 (libexternal_Saws_Slibaws.so+0x23be9a) #7 Aws::Auth::AWSCredentialsProviderChain::GetAWSCredentials() external/aws/aws-cpp-sdk-core/source/auth/AWSCredentialsProviderChain.cpp:35 (libexternal_Saws_Slibaws.so+0x244550) #8 Aws::Client::AWSAuthV4Signer::AWSAuthV4Signer(std::shared_ptr<Aws::Auth::AWSCredentialsProvider> const&, char const*, std::__cxx11::basic_string<char, std::char_traits<char>, Aws::Allocator<char> > const&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy, bool) external/aws/aws-cpp-sdk-core/source/auth/AWSAuthSigner.cpp:170 (libexternal_Saws_Slibaws.so+0x2262ed) #9 std::shared_ptr<Aws::Client::AWSAuthV4Signer> Aws::MakeShared<Aws::Client::AWSAuthV4Signer, std::shared_ptr<Aws::Auth::DefaultAWSCredentialsProviderChain>, char const*&, std::__cxx11::basic_string<char, std::char_traits<char>, Aws::Allocator<char> > const&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy&, bool>(char const*, std::shared_ptr<Aws::Auth::DefaultAWSCredentialsProviderChain>&&, char const*&, std::__cxx11::basic_string<char, std::char_traits<char>, Aws::Allocator<char> > const&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy&, bool&&) /usr/include/c++/9/ext/new_allocator.h:147 (libexternal_Saws_Slibaws.so+0x39a78b) #10 Aws::S3::S3Client::S3Client(Aws::Client::ClientConfiguration const&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy, bool, Aws::S3::US_EAST_1_REGIONAL_ENDPOINT_OPTION) external/aws/aws-cpp-sdk-s3/source/S3Client.cpp:134 (libexternal_Saws_Slibaws.so+0x39a78b) #11 std::shared_ptr<Aws::S3::S3Client>::shared_ptr<Aws::Allocator<Aws::S3::S3Client>, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy, bool const&>(std::_Sp_alloc_shared_tag<Aws::Allocator<Aws::S3::S3Client> >, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy&&, bool const&) /usr/include/c++/9/ext/new_allocator.h:147 (libexternal_Scom_Ugithub_Utiledb_Utiledb_Slibtiledb.so+0x2879bd) #12 std::shared_ptr<Aws::S3::S3Client> std::allocate_shared<Aws::S3::S3Client, Aws::Allocator<Aws::S3::S3Client>, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy, bool const&>(Aws::Allocator<Aws::S3::S3Client> const&, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy&&, bool const&) /usr/include/c++/9/bits/shared_ptr.h:702 (libexternal_Scom_Ugithub_Utiledb_Utiledb_Slibtiledb.so+0x2879bd) #13 std::shared_ptr<Aws::S3::S3Client> Aws::MakeShared<Aws::S3::S3Client, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy, bool const&>(char const*, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy&&, bool const&) external/aws/aws-cpp-sdk-core/include/aws/core/utils/memory/stl/AWSAllocator.h:106 (libexternal_Scom_Ugithub_Utiledb_Utiledb_Slibtiledb.so+0x2879bd) #14 tiledb::sm::S3::init_client() const external/com_github_tiledb_tiledb/tiledb/sm/filesystem/s3.cc:1104 (libexternal_Scom_Ugithub_Utiledb_Utiledb_Slibtiledb.so+0x2879bd) ``` --- TYPE: BUG DESC: Fix race within `S3::init_client`
joe-maley
pushed a commit
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May 3, 2021
Fixes #2201 This patch introduces a global lock on the `S3Client` constructor to prevent the following race reported from TSAN: ``` WARNING: ThreadSanitizer: data race (pid=12) Write of size 8 at 0x7fe93658a1b0 by thread T16 (mutexes: write M144250874682678808, write M150443169551677688): #0 cJSON_ParseWithOpts external/aws/aws-cpp-sdk-core/source/external/cjson/cJSON.cpp:1006 (libexternal_Saws_Slibaws.so+0x299bef) #1 Aws::Utils::Json::JsonValue::JsonValue(std::__cxx11::basic_string<char, std::char_traits<char>, Aws::Allocator<char> > const&) external/aws/aws-cpp-sdk-core/source/utils/json/JsonSerializer.cpp:39 (libexternal_Saws_Slibaws.so+0x32d09c) #2 Aws::Config::EC2InstanceProfileConfigLoader::LoadInternal() external/aws/aws-cpp-sdk-core/source/config/AWSProfileConfigLoader.cpp:341 (libexternal_Saws_Slibaws.so+0x286d88) #3 Aws::Config::AWSProfileConfigLoader::Load() external/aws/aws-cpp-sdk-core/source/config/AWSProfileConfigLoader.cpp:47 (libexternal_Saws_Slibaws.so+0x282b4f) #4 Aws::Auth::InstanceProfileCredentialsProvider::Reload() external/aws/aws-cpp-sdk-core/source/auth/AWSCredentialsProvider.cpp:265 (libexternal_Saws_Slibaws.so+0x235987) #5 Aws::Auth::InstanceProfileCredentialsProvider::RefreshIfExpired() external/aws/aws-cpp-sdk-core/source/auth/AWSCredentialsProvider.cpp:283 (libexternal_Saws_Slibaws.so+0x23613b) #6 Aws::Auth::InstanceProfileCredentialsProvider::GetAWSCredentials() external/aws/aws-cpp-sdk-core/source/auth/AWSCredentialsProvider.cpp:250 (libexternal_Saws_Slibaws.so+0x23be9a) #7 Aws::Auth::AWSCredentialsProviderChain::GetAWSCredentials() external/aws/aws-cpp-sdk-core/source/auth/AWSCredentialsProviderChain.cpp:35 (libexternal_Saws_Slibaws.so+0x244550) #8 Aws::Client::AWSAuthV4Signer::AWSAuthV4Signer(std::shared_ptr<Aws::Auth::AWSCredentialsProvider> const&, char const*, std::__cxx11::basic_string<char, std::char_traits<char>, Aws::Allocator<char> > const&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy, bool) external/aws/aws-cpp-sdk-core/source/auth/AWSAuthSigner.cpp:170 (libexternal_Saws_Slibaws.so+0x2262ed) #9 std::shared_ptr<Aws::Client::AWSAuthV4Signer> Aws::MakeShared<Aws::Client::AWSAuthV4Signer, std::shared_ptr<Aws::Auth::DefaultAWSCredentialsProviderChain>, char const*&, std::__cxx11::basic_string<char, std::char_traits<char>, Aws::Allocator<char> > const&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy&, bool>(char const*, std::shared_ptr<Aws::Auth::DefaultAWSCredentialsProviderChain>&&, char const*&, std::__cxx11::basic_string<char, std::char_traits<char>, Aws::Allocator<char> > const&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy&, bool&&) /usr/include/c++/9/ext/new_allocator.h:147 (libexternal_Saws_Slibaws.so+0x39a78b) #10 Aws::S3::S3Client::S3Client(Aws::Client::ClientConfiguration const&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy, bool, Aws::S3::US_EAST_1_REGIONAL_ENDPOINT_OPTION) external/aws/aws-cpp-sdk-s3/source/S3Client.cpp:134 (libexternal_Saws_Slibaws.so+0x39a78b) #11 std::shared_ptr<Aws::S3::S3Client>::shared_ptr<Aws::Allocator<Aws::S3::S3Client>, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy, bool const&>(std::_Sp_alloc_shared_tag<Aws::Allocator<Aws::S3::S3Client> >, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy&&, bool const&) /usr/include/c++/9/ext/new_allocator.h:147 (libexternal_Scom_Ugithub_Utiledb_Utiledb_Slibtiledb.so+0x2879bd) #12 std::shared_ptr<Aws::S3::S3Client> std::allocate_shared<Aws::S3::S3Client, Aws::Allocator<Aws::S3::S3Client>, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy, bool const&>(Aws::Allocator<Aws::S3::S3Client> const&, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy&&, bool const&) /usr/include/c++/9/bits/shared_ptr.h:702 (libexternal_Scom_Ugithub_Utiledb_Utiledb_Slibtiledb.so+0x2879bd) #13 std::shared_ptr<Aws::S3::S3Client> Aws::MakeShared<Aws::S3::S3Client, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy, bool const&>(char const*, Aws::Client::ClientConfiguration&, Aws::Client::AWSAuthV4Signer::PayloadSigningPolicy&&, bool const&) external/aws/aws-cpp-sdk-core/include/aws/core/utils/memory/stl/AWSAllocator.h:106 (libexternal_Scom_Ugithub_Utiledb_Utiledb_Slibtiledb.so+0x2879bd) #14 tiledb::sm::S3::init_client() const external/com_github_tiledb_tiledb/tiledb/sm/filesystem/s3.cc:1104 (libexternal_Scom_Ugithub_Utiledb_Utiledb_Slibtiledb.so+0x2879bd) ``` --- TYPE: BUG DESC: Fix race within `S3::init_client` Co-authored-by: Joe Maley <[email protected]>
eric-hughes-tiledb
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Jun 22, 2022
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