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Merge pull request epiforecasts#395 from arfon/patch-1
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seabbs authored Jul 4, 2021
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---
title: "covidregionaldata: Subnational data for COVID-19 epidemiology"
authors:
- name: Joseph Palmer$^{\star}$
- name: Joseph Palmer^[co-first author]
orcid: 0000-0002-5593-9352
affiliation: 1
- name: Katharine Sherratt$^{\star}$
- name: Katharine Sherratt^[co-first author]
orcid: 0000-0003-2049-3423
affiliation: 2
- name: Richard Martin-Nielson
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affiliation: 2
- name: Sebastian Funk
affiliation: 2
- name: Sam Abbott$^{\dagger}$
- name: Sam Abbott^[corresponding author]
affiliation: 2
orcid: 0000-0001-8057-8037
affiliations:
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- Sars-Cov-2

output: articles::joss_article
csl: apa.csl
journal: JOSS
link-citations: yes
---

#### $^{\star}$ co-first author $^{\dagger}$ corresponding author

# Summary

`covidregionaldata` is an R [@Rdev:2020] package that provides an interface to subnational and national level COVID-19 data. The package provides cleaned and verified COVID-19 test-positive case counts and, where available, counts of deaths, recoveries, and hospitalisations in a consistent and fully transparent framework. The package automates common processing steps while allowing researchers to easily and transparently trace the origin of the underlying data sources. It has been designed to allow users to easily extend the package's capabilities and contribute to shared data handling. All package code is archived on Zenodo and [GitHub](https://github.com/epiforecasts/covidregionaldata).
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