Fixes

RalfG · Jul 29, 2019 · e08413d · e08413d
1 parent 11eec84
commit e08413d
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Showing 4 changed files with 9 additions and 2 deletions.
diff --git a/Snakefile b/Snakefile
@@ -5,5 +5,5 @@ include: "make_speclib.snakefile"
 
 rule targets:
 	input:
-		speclib/spectral_library.peprec,
-		speclib/spectral_library.mgf
+		"speclib/spectral_library.peprec",
+		"speclib/spectral_library.mgf"
diff --git a/get_data.snakefile b/get_data.snakefile
@@ -1,3 +1,4 @@
+include: "get_data.snakefile"
 configfile: "conf/snakemake_config.json"
 
 

diff --git a/make_speclib.snakefile b/make_speclib.snakefile
@@ -1,6 +1,9 @@
+include: "get_data.snakefile"
 configfile: "conf/snakemake_config.json"
 
+
 RUNS, = glob_wildcards("mzid/{run}.pout")
+#RUNS = get_runs(config["download"]["pxd_identifier"], ['raw'], config["download"]["file_pattern"])
 
 
 rule speclib_targets:

diff --git a/search_data.snakefile b/search_data.snakefile
@@ -1,6 +1,9 @@
+include: "get_data.snakefile"
 configfile: "conf/snakemake_config.json"
 
+
 RUNS, = glob_wildcards("mgf/{run}.mgf")
+#RUNS = get_runs(config["download"]["pxd_identifier"], ['raw'], config["download"]["file_pattern"])
 
 
 rule search_targets:
Original file line number	Diff line number	Diff line change
		@@ -1,3 +1,4 @@
		include: "get_data.snakefile"
		configfile: "conf/snakemake_config.json"


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