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Merge pull request #105 from RADAR-base/fitbit-hrv
Added Fitbit Intraday HRV route
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82 changes: 82 additions & 0 deletions
82
...arbase/connect/rest/fitbit/converter/FitbitIntradayHeartRateVariabilityAvroConverter.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,82 @@ | ||
| /* | ||
| * Copyright 2018 The Hyve | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| * | ||
| */ | ||
|
|
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| package org.radarbase.connect.rest.fitbit.converter; | ||
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| import com.fasterxml.jackson.databind.JsonNode; | ||
| import io.confluent.connect.avro.AvroData; | ||
| import org.radarbase.connect.rest.RestSourceConnectorConfig; | ||
| import org.radarbase.connect.rest.fitbit.FitbitRestSourceConnectorConfig; | ||
| import org.radarbase.connect.rest.fitbit.request.FitbitRestRequest; | ||
| import org.radarcns.connector.fitbit.FitbitIntradayHeartRateVariability; | ||
| import org.slf4j.Logger; | ||
| import org.slf4j.LoggerFactory; | ||
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| import java.time.Instant; | ||
| import java.time.LocalDateTime; | ||
| import java.time.ZonedDateTime; | ||
| import java.util.stream.Stream; | ||
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||
| import static org.radarbase.connect.rest.util.ThrowingFunction.tryOrNull; | ||
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| public class FitbitIntradayHeartRateVariabilityAvroConverter extends FitbitAvroConverter { | ||
| private static final Logger logger = LoggerFactory.getLogger(FitbitIntradayHeartRateVariabilityAvroConverter.class); | ||
| private String heartRateVariabilityTopic; | ||
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| public FitbitIntradayHeartRateVariabilityAvroConverter(AvroData avroData) { | ||
| super(avroData); | ||
| } | ||
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| @Override | ||
| public void initialize(RestSourceConnectorConfig config) { | ||
| heartRateVariabilityTopic = ((FitbitRestSourceConnectorConfig) config).getFitbitIntradayHeartRateVariabilityTopic(); | ||
| logger.info("Using intraday heart rate variability topic {}", heartRateVariabilityTopic); | ||
| } | ||
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| @Override | ||
| protected Stream<TopicData> processRecords(FitbitRestRequest request, JsonNode root, double timeReceived) { | ||
| JsonNode hrv = root.get("hrv"); | ||
| if (hrv == null || !hrv.isArray()) { | ||
| logger.warn("No HRV is provided for {}: {}", request, root); | ||
| return Stream.empty(); | ||
| } | ||
| ZonedDateTime startDate = request.getDateRange().end(); | ||
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| return iterableToStream(hrv) | ||
| .filter(m -> m != null && m.isObject()) | ||
| .map(m -> m.get("minutes")) | ||
| .filter(minutes -> minutes != null && minutes.isArray()) | ||
| .flatMap(FitbitAvroConverter::iterableToStream) | ||
| .map(tryOrNull(minuteData -> parseHrv(minuteData, startDate, timeReceived), | ||
| (a, ex) -> logger.warn("Failed to convert heart rate variability from request {}, {}", request, a, ex))); | ||
| } | ||
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| private TopicData parseHrv(JsonNode minuteData, ZonedDateTime startDate, double timeReceived) { | ||
| Instant time = startDate.with(LocalDateTime.parse(minuteData.get("minute").asText())).toInstant(); | ||
| JsonNode value = minuteData.get("value"); | ||
| if (value == null || !value.isObject()) { | ||
| return null; | ||
| } | ||
| FitbitIntradayHeartRateVariability fitbitHrv = new FitbitIntradayHeartRateVariability(time.toEpochMilli() / 1000d, | ||
| timeReceived, | ||
| (float) value.get("dailyRmssd").asDouble(), | ||
| (float) value.get("coverage").asDouble(), | ||
| (float) value.get("hf").asDouble(), | ||
| (float) value.get("lf").asDouble()); | ||
| return new TopicData(time, heartRateVariabilityTopic, fitbitHrv); | ||
| } | ||
| } |
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62 changes: 62 additions & 0 deletions
62
...java/org/radarbase/connect/rest/fitbit/route/FitbitIntradayHeartRateVariabilityRoute.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,62 @@ | ||
| /* | ||
| * Copyright 2018 The Hyve | ||
| * | ||
| * Licensed under the Apache License, Version 2.0 (the "License"); | ||
| * you may not use this file except in compliance with the License. | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| * | ||
| */ | ||
|
|
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| package org.radarbase.connect.rest.fitbit.route; | ||
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| import io.confluent.connect.avro.AvroData; | ||
| import org.radarbase.connect.rest.fitbit.converter.FitbitIntradayHeartRateAvroConverter; | ||
| import org.radarbase.connect.rest.fitbit.converter.FitbitIntradayHeartRateVariabilityAvroConverter; | ||
| import org.radarbase.connect.rest.fitbit.request.FitbitRequestGenerator; | ||
| import org.radarbase.connect.rest.fitbit.request.FitbitRestRequest; | ||
| import org.radarbase.connect.rest.fitbit.user.User; | ||
| import org.radarbase.connect.rest.fitbit.user.UserRepository; | ||
| import org.radarbase.connect.rest.fitbit.util.DateRange; | ||
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| import java.time.ZonedDateTime; | ||
| import java.util.stream.Stream; | ||
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| import static java.time.ZoneOffset.UTC; | ||
| import static java.time.temporal.ChronoUnit.SECONDS; | ||
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| public class FitbitIntradayHeartRateVariabilityRoute extends FitbitPollingRoute { | ||
| private final FitbitIntradayHeartRateVariabilityAvroConverter converter; | ||
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| public FitbitIntradayHeartRateVariabilityRoute(FitbitRequestGenerator generator, | ||
| UserRepository userRepository, AvroData avroData) { | ||
| super(generator, userRepository, "intraday_heart_rate_variability"); | ||
| this.converter = new FitbitIntradayHeartRateVariabilityAvroConverter(avroData); | ||
| } | ||
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| @Override | ||
| protected String getUrlFormat(String baseUrl) { | ||
| return baseUrl + "/1/user/%s/hrv/date/%s/%s/all.json"; | ||
| } | ||
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| protected Stream<FitbitRestRequest> createRequests(User user) { | ||
| ZonedDateTime startDate = this.getOffset(user).plus(ONE_SECOND) | ||
| .atZone(UTC) | ||
| .truncatedTo(SECONDS); | ||
| ZonedDateTime now = ZonedDateTime.now(UTC); | ||
| return Stream.of(newRequest(user, new DateRange(startDate, now), | ||
| user.getExternalUserId(), DATE_FORMAT.format(startDate), DATE_FORMAT.format(now))); | ||
| } | ||
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| @Override | ||
| public FitbitIntradayHeartRateVariabilityAvroConverter converter() { | ||
| return converter; | ||
| } | ||
| } |