Nightingale v4

[gustavo-salazar]

All the changes required to use Nightingale components v4. The components/pages were the changes are relevant:

• Any protein viewer(e.g. protein, structure and model, interproscan)
• Sunburst view of the taxonomy
• Pfam alignments subpage
• Rossetta model pages have the multiple components interacting(heatmap, contacts, msa, navigation, and molstar)

Changes include:

• installing the new components from @nightingale-elements namespace in npm.
• All attributes are now snake-case
• d3 was removed as a general dependency and only kept d3-scale because of its use of mapping coordinates between structure, protein and entries.
• Most files changed correspond to updates on flow-typed sorry for the noise :-)
• dependencies updates.

NOTE: I'll move this from draft to an actual PR when all the PRs in nightingale get resolved. and components are published on full version and not alpha

[coveralls]

Coverage: 21.068% (+0.02%) from 21.047% when pulling e8be7b4 on nightingaleV4 into a69a90c on dev.

[matthiasblum]

Great work, thanks!

Only one thing that I think needs to be changed: a reference to protvista-colored-sequence

interpro7-client/src/components/ProtVista/Popup/Hydro/index.js

Line 10 in 1f1107a

const element = detail?.target?.closest('protvista-colored-sequence');

I saw that we depend on draft-js for the text box used to search sequences. Would it be possible to use Nightingale's textarea-sequence instead in the future?

[gustavo-salazar]

I saw that we depend on draft-js for the text box used to search sequences. Would it be possible to use Nightingale's textarea-sequence instead in the future?

Yes, thatwas the motivation to work on migrating textarea-sequnce at this stage. Draft.js has been deprecated, while Quill.js is still on active development