[MainThread] [ERROR] (uvicorn.error:56) - Application startup failed #985

tkt9k2562 · 2022-09-10T03:41:02Z

tkt9k2562
Sep 10, 2022

Hi there

I install the Development version on ubuntu 20.04 , with the following instructions

git clone https://github.com/Project-MONAI/MONAILabel
pip install -r MONAILabel/requirements.txt
export PATH=$PATH:`pwd`/MONAILabel/monailabel/scripts

monailabel apps --download --name radiology --output apps

Then , start the server with OHIF plugin

# start server using DICOMWeb
monailabel start_server --app apps/radiology --studies http://127.0.0.1:8042/dicom-web

But I get the error below

[2022-09-10 03:35:41,564] [63279] [MainThread] [INFO] (uvicorn.error:75) - Started server process [63279]
[2022-09-10 03:35:41,564] [63279] [MainThread] [INFO] (uvicorn.error:45) - Waiting for application startup.
[2022-09-10 03:35:41,565] [63279] [MainThread] [INFO] (monailabel.interfaces.utils.app:38) - Initializing App from: /home/tkt9k2562/apps/radiology; studies: http://127.0.0.1:8042/dicom-web; conf: {}
[2022-09-10 03:35:42,228] [63279] [MainThread] [ERROR] (uvicorn.error:119) - Traceback (most recent call last):
  File "/home/tkt9k2562/anaconda3/lib/python3.9/site-packages/starlette/routing.py", line 635, in lifespan
    async with self.lifespan_context(app):
  File "/home/tkt9k2562/anaconda3/lib/python3.9/site-packages/starlette/routing.py", line 530, in __aenter__
    await self._router.startup()
  File "/home/tkt9k2562/anaconda3/lib/python3.9/site-packages/starlette/routing.py", line 612, in startup
    await handler()
  File "/home/tkt9k2562/MONAILabel/monailabel/app.py", line 104, in startup_event
    instance = app_instance()
  File "/home/tkt9k2562/MONAILabel/monailabel/interfaces/utils/app.py", line 44, in app_instance
    c = get_class_of_subclass_from_file("main", main_py, "MONAILabelApp")
  File "/home/tkt9k2562/MONAILabel/monailabel/utils/others/class_utils.py", line 55, in get_class_of_subclass_from_file
    return get_class_of_subclass(module_from_file(module_name, file_path), class_c)
  File "/home/tkt9k2562/MONAILabel/monailabel/utils/others/class_utils.py", line 27, in module_from_file
    spec.loader.exec_module(module)
  File "<frozen importlib._bootstrap_external>", line 850, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/home/tkt9k2562/apps/radiology/main.py", line 29, in <module>
    from monailabel.tasks.infer.deepgrow_pipeline import InferDeepgrowPipeline
ModuleNotFoundError: No module named 'monailabel.tasks.infer.deepgrow_pipeline'

[2022-09-10 03:35:42,228] [63279] [MainThread] [ERROR] (uvicorn.error:56) - Application startup failed. Exiting.

Does anyone have any ideas?

Thanks in advance!

Answered by SachidanandAlle

Sep 10, 2022

Since you are using development way.. you need build ohif as well.. go to plugins ohif folder and build the same.. then you should be able to use the same

View full answer

SachidanandAlle · 2022-09-10T05:36:54Z

SachidanandAlle
Sep 10, 2022
Maintainer

Since you are using development way.. you need build ohif as well.. go to plugins ohif folder and build the same.. then you should be able to use the same

5 replies

tkt9k2562 Sep 10, 2022
Author

Thank you !
I go to the plugins/ohif , then execute these really works !

cd plugins/ohif && ./build.sh

monailabel start_server -a apps/radiology -s http://127.0.0.1:8042/dicom-web --conf models segmentation_spleen

vincentochs Nov 8, 2022

Sorry for disturbing you:

any way of doing this with 3DSlicer?

I have done the same steps for installation

git clone https://github.com/Project-MONAI/MONAILabel
pip install -r MONAILabel/requirements.txt
export PATH=$PATH:pwd/MONAILabel/monailabel/scripts

and then when running:

monailabel start_server --app apps/radiology --studies datasets/Task09_Spleen/imagesTr --conf models deepedit

I get the same error:

ModuleNotFoundError: No module named 'monailabel.tasks.infer.deepgrow_pipeline'

[2022-11-08 15:32:07,293] [2498248] [MainThread] [ERROR] (uvicorn.error:56) - Application startup failed. Exiting

I can also create a new thread if you want me to

diazandr3s Nov 8, 2022
Maintainer

Sorry for disturbing you:

any way of doing this with 3DSlicer?

I have done the same steps for installation

git clone https://github.com/Project-MONAI/MONAILabel pip install -r MONAILabel/requirements.txt export PATH=$PATH:pwd/MONAILabel/monailabel/scripts

and then when running:

monailabel start_server --app apps/radiology --studies datasets/Task09_Spleen/imagesTr --conf models deepedit

I get the same error:

ModuleNotFoundError: No module named 'monailabel.tasks.infer.deepgrow_pipeline'

[2022-11-08 15:32:07,293] [2498248] [MainThread] [ERROR] (uvicorn.error:56) - Application startup failed. Exiting

I can also create a new thread if you want me to

Hi @vincentochs ,

Did you create a python env before running this (pip install -r MONAILabel/requirements.txt) or you installed the requirements in the base env?

I've just checked and the deepgrow_pipeline is there in the main branch (https://github.com/Project-MONAI/MONAILabel/blob/main/sample-apps/radiology/lib/infers/deepgrow_pipeline.py) - so it is strange you're getting. Can you please share the full logs?

In any case, open a terminal, go inside the MONAILabel folder and start the server like this:

./monailabel/scripts/monailabel start_server --app apps/radiology --studies datasets/Task09_Spleen/imagesTr --conf models deepedit

BTW, is there a reason for using the GitHub repo? Have you tried creating a python virtual env and installing monai label with a simple pip install monailabel?

More information here: https://www.youtube.com/watch?v=8y1OBQs2wis&list=PLtoSVSQ2XzyD4lc-lAacFBzOdv5Ou-9IA

vincentochs Nov 10, 2022

Hi @diazandr3s thank you for your fast reply!

Here are my loggs:


(monailabel-env) vincent.ochs@dbe-cia-sl19-01:~$ monailabel start_server --app apps/radiology --studies datasets/Task09_Spleen/imagesTr --conf models deepedit
Using PYTHONPATH=/home/vincent.ochs/miniconda3/envs:

2022-11-10 14:31:24,422 - USING:: version = False
2022-11-10 14:31:24,423 - USING:: app = /home/vincent.ochs/apps/radiology
2022-11-10 14:31:24,423 - USING:: studies = /home/vincent.ochs/datasets/Task09_Spleen/imagesTr
2022-11-10 14:31:24,423 - USING:: verbose = INFO
2022-11-10 14:31:24,423 - USING:: conf = [['models', 'deepedit']]
2022-11-10 14:31:24,423 - USING:: host = 0.0.0.0
2022-11-10 14:31:24,423 - USING:: port = 8000
2022-11-10 14:31:24,423 - USING:: uvicorn_app = monailabel.app:app
2022-11-10 14:31:24,423 - USING:: ssl_keyfile = None
2022-11-10 14:31:24,423 - USING:: ssl_certfile = None
2022-11-10 14:31:24,423 - USING:: ssl_keyfile_password = None
2022-11-10 14:31:24,423 - USING:: ssl_ca_certs = None
2022-11-10 14:31:24,423 - USING:: workers = None
2022-11-10 14:31:24,423 - USING:: limit_concurrency = None
2022-11-10 14:31:24,423 - USING:: access_log = False
2022-11-10 14:31:24,423 - USING:: log_config = None
2022-11-10 14:31:24,423 - USING:: dryrun = False
2022-11-10 14:31:24,423 - USING:: action = start_server
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_API_STR = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_PROJECT_NAME = MONAILabel
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_APP_DIR = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_STUDIES = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_AUTH_ENABLE = False
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_AUTH_DB = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_APP_CONF = '{}'
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_TASKS_TRAIN = True
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_TASKS_STRATEGY = True
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_TASKS_SCORING = True
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_TASKS_BATCH_INFER = True
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_URL = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_USERNAME = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_PASSWORD = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_API_KEY = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_CACHE_PATH = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_PROJECT = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_ASSET_PATH = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_DSA_ANNOTATION_GROUPS = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_USERNAME = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_PASSWORD = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_CACHE_PATH = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_QIDO_PREFIX = None
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_WADO_PREFIX = None
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_STOW_PREFIX = None
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_FETCH_BY_FRAME = False
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_CONVERT_TO_NIFTI = True
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_SEARCH_FILTER = '{"Modality": "CT"}'
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_CACHE_EXPIRY = 180
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_PROXY_TIMEOUT = 30.0
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_READ_TIMEOUT = 5.0
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_AUTO_RELOAD = True
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_READ_ONLY = False
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_FILE_EXT = '["*.nii.gz", "*.nii", "*.nrrd", "*.jpg", "*.png", "*.tif", "*.svs", "*.xml"]'
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_SERVER_PORT = 8000
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_CORS_ORIGINS = '[]'
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_SESSIONS = True
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_SESSION_PATH = 
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_SESSION_EXPIRY = 3600
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_INFER_CONCURRENCY = -1
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_INFER_TIMEOUT = 600
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_AUTO_UPDATE_SCORING = True
2022-11-10 14:31:24,424 - 
Allow Origins: ['*']
[2022-11-10 14:31:24,804] [3714814] [MainThread] [INFO] (uvicorn.error:75) - Started server process [3714814]
[2022-11-10 14:31:24,804] [3714814] [MainThread] [INFO] (uvicorn.error:45) - Waiting for application startup.
[2022-11-10 14:31:24,804] [3714814] [MainThread] [INFO] (monailabel.interfaces.utils.app:38) - Initializing App from: /home/vincent.ochs/apps/radiology; studies: /home/vincent.ochs/datasets/Task09_Spleen/imagesTr; conf: {'models': 'deepedit'}
[2022-11-10 14:31:25,030] [3714814] [MainThread] [ERROR] (uvicorn.error:119) - Traceback (most recent call last):
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/starlette/routing.py", line 635, in lifespan
    async with self.lifespan_context(app):
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/starlette/routing.py", line 530, in __aenter__
    await self._router.startup()
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/starlette/routing.py", line 612, in startup
    await handler()
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/monailabel/app.py", line 106, in startup_event
    instance = app_instance()
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/monailabel/interfaces/utils/app.py", line 44, in app_instance
    c = get_class_of_subclass_from_file("main", main_py, "MONAILabelApp")
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/monailabel/utils/others/class_utils.py", line 55, in get_class_of_subclass_from_file
    return get_class_of_subclass(module_from_file(module_name, file_path), class_c)
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/monailabel/utils/others/class_utils.py", line 27, in module_from_file
    spec.loader.exec_module(module)
  File "<frozen importlib._bootstrap_external>", line 850, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/home/vincent.ochs/apps/radiology/main.py", line 29, in <module>
    from monailabel.tasks.infer.deepgrow_pipeline import InferDeepgrowPipeline
ModuleNotFoundError: No module named 'monailabel.tasks.infer.deepgrow_pipeline'

[2022-11-10 14:31:25,030] [3714814] [MainThread] [ERROR] (uvicorn.error:56) - Application startup failed. Exiting.

When going into MONAILabel and running your suggested command I get the following results


(monailabel-env) vincent.ochs@dbe-cia-sl19-01:~/MONAILabel$ ./monailabel/scripts/monailabel start_server --app apps/radiology --studies datasets/Task09_Spleen/imagesTr --conf models deepedit
Using PYTHONPATH=/home/vincent.ochs/MONAILabel:

APP Directory apps/radiology NOT Found

diazandr3s Nov 14, 2022
Maintainer

Hi @diazandr3s thank you for your fast reply!

Here are my loggs:


(monailabel-env) vincent.ochs@dbe-cia-sl19-01:~$ monailabel start_server --app apps/radiology --studies datasets/Task09_Spleen/imagesTr --conf models deepedit
Using PYTHONPATH=/home/vincent.ochs/miniconda3/envs:

2022-11-10 14:31:24,422 - USING:: version = False
2022-11-10 14:31:24,423 - USING:: app = /home/vincent.ochs/apps/radiology
2022-11-10 14:31:24,423 - USING:: studies = /home/vincent.ochs/datasets/Task09_Spleen/imagesTr
2022-11-10 14:31:24,423 - USING:: verbose = INFO
2022-11-10 14:31:24,423 - USING:: conf = [['models', 'deepedit']]
2022-11-10 14:31:24,423 - USING:: host = 0.0.0.0
2022-11-10 14:31:24,423 - USING:: port = 8000
2022-11-10 14:31:24,423 - USING:: uvicorn_app = monailabel.app:app
2022-11-10 14:31:24,423 - USING:: ssl_keyfile = None
2022-11-10 14:31:24,423 - USING:: ssl_certfile = None
2022-11-10 14:31:24,423 - USING:: ssl_keyfile_password = None
2022-11-10 14:31:24,423 - USING:: ssl_ca_certs = None
2022-11-10 14:31:24,423 - USING:: workers = None
2022-11-10 14:31:24,423 - USING:: limit_concurrency = None
2022-11-10 14:31:24,423 - USING:: access_log = False
2022-11-10 14:31:24,423 - USING:: log_config = None
2022-11-10 14:31:24,423 - USING:: dryrun = False
2022-11-10 14:31:24,423 - USING:: action = start_server
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_API_STR = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_PROJECT_NAME = MONAILabel
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_APP_DIR = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_STUDIES = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_AUTH_ENABLE = False
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_AUTH_DB = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_APP_CONF = '{}'
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_TASKS_TRAIN = True
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_TASKS_STRATEGY = True
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_TASKS_SCORING = True
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_TASKS_BATCH_INFER = True
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_URL = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_USERNAME = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_PASSWORD = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_API_KEY = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_CACHE_PATH = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_PROJECT = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_ASSET_PATH = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_DSA_ANNOTATION_GROUPS = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_USERNAME = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_PASSWORD = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_CACHE_PATH = 
2022-11-10 14:31:24,423 - ENV SETTINGS:: MONAI_LABEL_QIDO_PREFIX = None
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_WADO_PREFIX = None
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_STOW_PREFIX = None
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_FETCH_BY_FRAME = False
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_CONVERT_TO_NIFTI = True
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_SEARCH_FILTER = '{"Modality": "CT"}'
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_CACHE_EXPIRY = 180
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_PROXY_TIMEOUT = 30.0
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DICOMWEB_READ_TIMEOUT = 5.0
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_AUTO_RELOAD = True
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_READ_ONLY = False
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_DATASTORE_FILE_EXT = '["*.nii.gz", "*.nii", "*.nrrd", "*.jpg", "*.png", "*.tif", "*.svs", "*.xml"]'
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_SERVER_PORT = 8000
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_CORS_ORIGINS = '[]'
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_SESSIONS = True
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_SESSION_PATH = 
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_SESSION_EXPIRY = 3600
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_INFER_CONCURRENCY = -1
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_INFER_TIMEOUT = 600
2022-11-10 14:31:24,424 - ENV SETTINGS:: MONAI_LABEL_AUTO_UPDATE_SCORING = True
2022-11-10 14:31:24,424 - 
Allow Origins: ['*']
[2022-11-10 14:31:24,804] [3714814] [MainThread] [INFO] (uvicorn.error:75) - Started server process [3714814]
[2022-11-10 14:31:24,804] [3714814] [MainThread] [INFO] (uvicorn.error:45) - Waiting for application startup.
[2022-11-10 14:31:24,804] [3714814] [MainThread] [INFO] (monailabel.interfaces.utils.app:38) - Initializing App from: /home/vincent.ochs/apps/radiology; studies: /home/vincent.ochs/datasets/Task09_Spleen/imagesTr; conf: {'models': 'deepedit'}
[2022-11-10 14:31:25,030] [3714814] [MainThread] [ERROR] (uvicorn.error:119) - Traceback (most recent call last):
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/starlette/routing.py", line 635, in lifespan
    async with self.lifespan_context(app):
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/starlette/routing.py", line 530, in __aenter__
    await self._router.startup()
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/starlette/routing.py", line 612, in startup
    await handler()
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/monailabel/app.py", line 106, in startup_event
    instance = app_instance()
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/monailabel/interfaces/utils/app.py", line 44, in app_instance
    c = get_class_of_subclass_from_file("main", main_py, "MONAILabelApp")
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/monailabel/utils/others/class_utils.py", line 55, in get_class_of_subclass_from_file
    return get_class_of_subclass(module_from_file(module_name, file_path), class_c)
  File "/home/vincent.ochs/miniconda3/envs/monailabel-env/lib/python3.9/site-packages/monailabel/utils/others/class_utils.py", line 27, in module_from_file
    spec.loader.exec_module(module)
  File "<frozen importlib._bootstrap_external>", line 850, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/home/vincent.ochs/apps/radiology/main.py", line 29, in <module>
    from monailabel.tasks.infer.deepgrow_pipeline import InferDeepgrowPipeline
ModuleNotFoundError: No module named 'monailabel.tasks.infer.deepgrow_pipeline'

[2022-11-10 14:31:25,030] [3714814] [MainThread] [ERROR] (uvicorn.error:56) - Application startup failed. Exiting.

When going into MONAILabel and running your suggested command I get the following results


(monailabel-env) vincent.ochs@dbe-cia-sl19-01:~/MONAILabel$ ./monailabel/scripts/monailabel start_server --app apps/radiology --studies datasets/Task09_Spleen/imagesTr --conf models deepedit
Using PYTHONPATH=/home/vincent.ochs/MONAILabel:

APP Directory apps/radiology NOT Found

Comments to this can be found here: #1143 (comment)

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[MainThread] [ERROR] (uvicorn.error:56) - Application startup failed #985

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[MainThread] [ERROR] (uvicorn.error:56) - Application startup failed #985

tkt9k2562 Sep 10, 2022

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SachidanandAlle Sep 10, 2022 Maintainer

tkt9k2562 Sep 10, 2022 Author

vincentochs Nov 8, 2022

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tkt9k2562
Sep 10, 2022

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SachidanandAlle
Sep 10, 2022
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tkt9k2562 Sep 10, 2022
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