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[pre-commit.ci] auto fixes from pre-commit.com hooks
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for more information, see https://pre-commit.ci

Signed-off-by: Jose Raniery <[email protected]>
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pre-commit-ci[bot] authored and jose-rfj committed Jul 8, 2024
1 parent 012c2dd commit 27c2dc4
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions plugins/slicer/MONAILabel/MONAILabel.py
Original file line number Diff line number Diff line change
Expand Up @@ -1415,8 +1415,8 @@ def onUploadImage(self, init_sample=True, session=False):
start = time.time()
shNode = slicer.vtkMRMLSubjectHierarchyNode.GetSubjectHierarchyNode(slicer.mrmlScene)
volumeShItemID = shNode.GetItemByDataNode(volumeNode)
seriesInstanceUID = shNode.GetItemUID(volumeShItemID, 'DICOM')

seriesInstanceUID = shNode.GetItemUID(volumeShItemID, "DICOM")
instUids = slicer.dicomDatabase.instancesForSeries(seriesInstanceUID)
studyInstanceUID = slicer.dicomDatabase.instanceValue(instUids[0], "0020,000D")

Expand All @@ -1437,19 +1437,19 @@ def onUploadImage(self, init_sample=True, session=False):
# if includeDicomFilesCheckBox is marked, save original dicom files on the client
if slicer.util.settingsValue("MONAILabel/includeDicomFiles", False, converter=slicer.util.toBool):
dcm_filenames = self.get_dicom_files()

# send to server only the first slice due to transfer overhead
dcm_filenames.sort()
dcm_filenames = dcm_filenames[:1]

report_progress_increment = round(last_report_progress / len(dcm_filenames), 1)
for dcm_fullpath in dcm_filenames:
# set original study and series UIDs
# set original study and series UIDs
dcm = dcmread(dcm_fullpath)
dcm.StudyInstanceUID = studyInstanceUID
dcm.SeriesInstanceUID = seriesInstanceUID
dcm.save_as(dcm_fullpath)

dcm_filename = dcm_fullpath.split("/")[-1]
dcm_filename = ".".join(dcm_filename.split(".")[:-1])
self.logic.upload_image(dcm_fullpath, dcm_filename)
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