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Hovernet and associated test script added #4602

Merged
merged 14 commits into from
Jun 29, 2022
Merged

Hovernet and associated test script added #4602

merged 14 commits into from
Jun 29, 2022

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JHancox
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@JHancox JHancox commented Jun 28, 2022

Fixes #4182 .

Description

A MONAI-based implementation of the HoverNet architecture

Status

Work in progress
This is the network + test script, but the full inference pipeline contains post-processing which will be added subsequently.
An example notebook will also be added.

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • [x ] New tests added to cover the changes.
  • [x ] Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • [ x] Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • [x ] In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

@wyli
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wyli commented Jun 28, 2022

/black

@wyli
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wyli commented Jun 28, 2022

/black

@wyli
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wyli commented Jun 28, 2022

/build

@JHancox JHancox marked this pull request as ready for review June 28, 2022 21:19
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@wyli wyli left a comment

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thanks, it looks good to me, full pipeline with postprocessing to follow.

@wyli
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wyli commented Jun 29, 2022

/build

@wyli wyli enabled auto-merge (squash) June 29, 2022 08:35
@wyli
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wyli commented Jun 29, 2022

/build

@wyli wyli merged commit 91ec2b5 into Project-MONAI:dev Jun 29, 2022
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HoVerNet Model
3 participants