Skip to content
Run tests during PR

event based temporal SEIR algorithm #898

Sign in to view logs

event based temporal SEIR algorithm

event based temporal SEIR algorithm #898

Triggered via pull request December 15, 2023 14:51
@ljeub-pometryljeub-pometry
synchronize #1415
feature/temporalSIR
Status Failure
Total duration 6m 32s
Artifacts –

test_during_pr.yml

on: pull_request
Rust format check  /  rust-format-check
16s
Rust format check / rust-format-check
Run Python tests  /  select-strategy
0s
Run Python tests / select-strategy
Matrix: Run benchmarks / Rust Benchmark
Matrix: Run Rust tests / Doc tests
Matrix: Run Rust tests / Rust Tests
Matrix: Run Python tests / Python Tests
Fit to window
Zoom out
Zoom in

Annotations

11 errors and 83 warnings
Run Python tests / Python Tests (3.8, ubuntu-latest): raphtory/src/python/packages/vectors.rs#L170
failed to resolve: use of undeclared type `PathBuf`
Run Python tests / Python Tests (3.8, ubuntu-latest)
aborting due to previous error; 1 warning emitted
Run Python tests / Python Tests (3.8, ubuntu-latest)
The process '/home/runner/work/_temp/a1e8b241-e685-47cd-a458-220303e90caa/maturin' failed with exit code 1
Run Python tests / Python Tests (3.8, macos-latest)
The operation was canceled.
Run Python tests / Python Tests (3.8, windows-latest)
The operation was canceled.
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache): raphtory/src/python/packages/vectors.rs#L170
failed to resolve: use of undeclared type `PathBuf`
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
could not compile `raphtory` (lib) due to previous error
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
Process completed with exit code 101.
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
The operation was canceled.
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
The operation was canceled.
Run Rust tests / Doc tests (ubuntu-latest)
Process completed with exit code 1.
Rust format check / rust-format-check
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Rust format check / rust-format-check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Rust format check / rust-format-check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Rust format check / rust-format-check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Rust format check / rust-format-check
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Python tests / Python Tests (3.8, ubuntu-latest)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run Python tests / Python Tests (3.8, ubuntu-latest)
ignoring -C extra-filename flag due to -o flag
Run Python tests / Python Tests (3.8, ubuntu-latest)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Python tests / Python Tests (3.8, ubuntu-latest)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Python tests / Python Tests (3.8, ubuntu-latest)
some crates are on edition 2021 which defaults to `resolver = "2"`, but virtual workspaces default to `resolver = "1"`
Run Python tests / Python Tests (3.8, ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Python tests / Python Tests (3.8, ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Python tests / Python Tests (3.8, ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Python tests / Python Tests (3.8, ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Python tests / Python Tests (3.8, macos-latest)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run Python tests / Python Tests (3.8, windows-latest)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run Python tests / Python Tests (3.8, windows-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Python tests / Python Tests (3.8, windows-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Python tests / Python Tests (3.8, windows-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Python tests / Python Tests (3.8, windows-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
some crates are on edition 2021 which defaults to `resolver = "2"`, but virtual workspaces default to `resolver = "1"`
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
/home/runner/work/Raphtory/Raphtory/python/Cargo.toml: unused manifest key: package.doc
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
/home/runner/work/Raphtory/Raphtory/examples/rust/Cargo.toml: unused manifest key: target.x86_64-unknown-linux-gnu.rustflags
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (ubuntu-latest, /home/runner/.cache/sccache)
some crates are on edition 2021 which defaults to `resolver = "2"`, but virtual workspaces default to `resolver = "1"`
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
some crates are on edition 2021 which defaults to `resolver = "2"`, but virtual workspaces default to `resolver = "1"`
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
D:\a\Raphtory\Raphtory\python\Cargo.toml: unused manifest key: package.doc
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
D:\a\Raphtory\Raphtory\examples\rust\Cargo.toml: unused manifest key: target.x86_64-unknown-linux-gnu.rustflags
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (windows-latest, C:\Users\runner\AppData\Local\Mozilla\sccache)
some crates are on edition 2021 which defaults to `resolver = "2"`, but virtual workspaces default to `resolver = "1"`
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
some crates are on edition 2021 which defaults to `resolver = "2"`, but virtual workspaces default to `resolver = "1"`
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
some crates are on edition 2021 which defaults to `resolver = "2"`, but virtual workspaces default to `resolver = "1"`
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
/Users/runner/work/Raphtory/Raphtory/python/Cargo.toml: unused manifest key: package.doc
Run Rust tests / Rust Tests (macos-latest, /Users/runner/Library/Caches/Mozilla.sccache)
/Users/runner/work/Raphtory/Raphtory/examples/rust/Cargo.toml: unused manifest key: target.x86_64-unknown-linux-gnu.rustflags
Run Rust tests / Doc tests (ubuntu-latest)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run Rust tests / Doc tests (ubuntu-latest): raphtory/src/algorithms/dynamics/temporal/epidemics.rs#L150
this URL is not a hyperlink
Run Rust tests / Doc tests (ubuntu-latest)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Doc tests (ubuntu-latest)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run Rust tests / Doc tests (ubuntu-latest)
some crates are on edition 2021 which defaults to `resolver = "2"`, but virtual workspaces default to `resolver = "1"`
Run Rust tests / Doc tests (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Doc tests (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Doc tests (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run Rust tests / Doc tests (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run benchmarks / Rust Benchmark (ubuntu-latest)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run benchmarks / Rust Benchmark (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run benchmarks / Rust Benchmark (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run benchmarks / Rust Benchmark (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run benchmarks / Rust Benchmark (ubuntu-latest)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Run benchmarks / Rust Benchmark (ubuntu-latest)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run benchmarks / Rust Benchmark (ubuntu-latest)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run benchmarks / Rust Benchmark (ubuntu-latest)
some crates are on edition 2021 which defaults to `resolver = "2"`, but virtual workspaces default to `resolver = "1"`
Run benchmarks / Rust Benchmark (ubuntu-latest)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run benchmarks / Rust Benchmark (ubuntu-latest)
profiles for the non root package will be ignored, specify profiles at the workspace root:
Run benchmarks / Rust Benchmark (ubuntu-latest)
some crates are on edition 2021 which defaults to `resolver = "2"`, but virtual workspaces default to `resolver = "1"`
Run benchmarks / Rust Benchmark (ubuntu-latest)
/home/runner/work/Raphtory/Raphtory/examples/rust/Cargo.toml: unused manifest key: target.x86_64-unknown-linux-gnu.linker
Run benchmarks / Rust Benchmark (ubuntu-latest)
/home/runner/work/Raphtory/Raphtory/python/Cargo.toml: unused manifest key: package.doc
Run benchmarks / Rust Benchmark (ubuntu-latest): raphtory/src/algorithms/dynamics/temporal/epidemics.rs#L165
function `temporal_SEIR` should have a snake case name
Run benchmarks / Rust Benchmark (ubuntu-latest)
`raphtory` (lib) generated 1 warning