Skip to content

Commit

Permalink
Merge branch 'develop'
Browse files Browse the repository at this point in the history
  • Loading branch information
@gildeluermoz
gildeluermoz committed Oct 28, 2015
2 parents b3bcd5c + 85a76a9 commit f7e8281
Show file tree
Hide file tree
Showing 3 changed files with 383 additions and 90 deletions.
5 changes: 5 additions & 0 deletions data/2154/data_synthese_2154.sql
View file
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,11 @@ SELECT pg_catalog.setval('t_applications_id_application_seq', 15, true);

SELECT pg_catalog.setval('t_menus_id_menu_seq', 10, true);

SET search_path = public, pg_catalog;

INSERT INTO cor_boolean VALUES('oui',true);
INSERT INTO cor_boolean VALUES('non',false);


SET search_path = synthese, pg_catalog;

Expand Down
234 changes: 144 additions & 90 deletions data/2154/synthese_2154.sql
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2684,12 +2684,25 @@ END;
$$;


SET search_path = contactfaune, pg_catalog;
SET search_path = public, pg_catalog;

SET default_tablespace = '';

SET default_with_oids = false;

--
-- Name: cor_boolean; Type: TABLE; Schema: public; Owner: -; Tablespace:
--

CREATE TABLE cor_boolean
(
expression character varying(25) NOT NULL,
bool boolean NOT NULL
);


SET search_path = contactfaune, pg_catalog;

--
-- Name: bib_criteres_cf; Type: TABLE; Schema: contactfaune; Owner: -; Tablespace:
--
Expand Down Expand Up @@ -4605,10 +4618,94 @@ CREATE TABLE taxref_protection_especes (
-- Name: v_tree_taxons_synthese; Type: VIEW; Schema: synthese; Owner: -
--

CREATE OR REPLACE VIEW synthese.v_tree_taxons_synthese AS
WITH taxon AS
(
SELECT tx.id_taxon,
tx.nom_latin,
tx.nom_francais,
taxref.cd_nom,
taxref.id_statut,
taxref.id_habitat,
taxref.id_rang,
taxref.regne,
taxref.phylum,
taxref.classe,
taxref.ordre,
taxref.famille,
taxref.cd_taxsup,
taxref.cd_ref,
taxref.lb_nom,
taxref.lb_auteur,
taxref.nom_complet,
taxref.nom_valide,
taxref.nom_vern,
taxref.nom_vern_eng,
taxref.group1_inpn,
taxref.group2_inpn
FROM
(
SELECT
tx_1.id_taxon,
taxref_1.cd_nom,
taxref_1.cd_ref,
taxref_1.lb_nom AS nom_latin,
CASE
WHEN tx_1.nom_francais IS NULL THEN taxref_1.lb_nom
WHEN tx_1.nom_francais::text = ''::text THEN taxref_1.lb_nom
ELSE tx_1.nom_francais
END AS nom_francais
FROM taxonomie.taxref taxref_1
LEFT JOIN taxonomie.bib_taxons tx_1 ON tx_1.cd_nom = taxref_1.cd_nom
WHERE (taxref_1.cd_nom IN ( SELECT DISTINCT syntheseff.cd_nom FROM synthese.syntheseff))
) tx
JOIN taxonomie.taxref taxref ON taxref.cd_nom = tx.cd_ref
)
SELECT t.id_taxon,
t.cd_ref,
t.nom_latin,
t.nom_francais,
t.id_regne,
t.nom_regne,
COALESCE(t.id_embranchement, t.id_regne) AS id_embranchement,
COALESCE(t.nom_embranchement, ' Sans embranchement dans taxref'::character varying) AS nom_embranchement,
COALESCE(t.id_classe, t.id_embranchement) AS id_classe,
COALESCE(t.nom_classe, ' Sans classe dans taxref'::character varying) AS nom_classe,
COALESCE(t.desc_classe, ' Sans classe dans taxref'::character varying) AS desc_classe,
COALESCE(t.id_ordre, t.id_classe) AS id_ordre,
COALESCE(t.nom_ordre, ' Sans ordre dans taxref'::character varying) AS nom_ordre,
COALESCE(t.id_famille, t.id_ordre) AS id_famille,
COALESCE(t.nom_famille, ' Sans famille dans taxref'::character varying) AS nom_famille
FROM
(
SELECT DISTINCT t_1.id_taxon,
t_1.cd_ref,
t_1.nom_latin,
t_1.nom_francais,
(SELECT taxref.cd_nom FROM taxonomie.taxref WHERE taxref.id_rang = 'KD'::bpchar AND taxref.lb_nom::text = t_1.regne::text) AS id_regne,
t_1.regne AS nom_regne,
ph.cd_nom AS id_embranchement,
t_1.phylum AS nom_embranchement,
t_1.phylum AS desc_embranchement,
cl.cd_nom AS id_classe,
t_1.classe AS nom_classe,
t_1.classe AS desc_classe,
ord.cd_nom AS id_ordre,
t_1.ordre AS nom_ordre,
f.cd_nom AS id_famille,
t_1.famille AS nom_famille
FROM taxon t_1
LEFT JOIN taxonomie.taxref ph ON ph.id_rang = 'PH'::bpchar AND ph.cd_nom = ph.cd_ref AND ph.lb_nom::text = t_1.phylum::text AND NOT t_1.phylum IS NULL
LEFT JOIN taxonomie.taxref cl ON cl.id_rang = 'CL'::bpchar AND cl.cd_nom = cl.cd_ref AND cl.lb_nom::text = t_1.classe::text AND NOT t_1.classe IS NULL
LEFT JOIN taxonomie.taxref ord ON ord.id_rang = 'OR'::bpchar AND ord.cd_nom = ord.cd_ref AND ord.lb_nom::text = t_1.ordre::text AND NOT t_1.ordre IS NULL
LEFT JOIN taxonomie.taxref f ON f.id_rang = 'FM'::bpchar AND f.cd_nom = f.cd_ref AND f.lb_nom::text = t_1.famille::text AND f.phylum::text = t_1.phylum::text AND NOT t_1.famille IS NULL
) t;


CREATE OR REPLACE VIEW synthese.v_tree_taxons_synthese AS
WITH taxon AS (
SELECT tx.id_taxon,
WITH taxon AS
(
SELECT tx.id_taxon,
tx.nom_latin,
tx.nom_francais,
taxref.cd_nom,
Expand All @@ -4630,22 +4727,23 @@ CREATE OR REPLACE VIEW synthese.v_tree_taxons_synthese AS
taxref.nom_vern_eng,
taxref.group1_inpn,
taxref.group2_inpn
FROM ( SELECT tx_1.id_taxon,
FROM
(
SELECT tx_1.id_taxon,
taxref_1.cd_nom,
taxonomie.find_cdref(taxref_1.cd_nom) AS cd_ref,
taxref_1.cd_ref,
taxref_1.lb_nom AS nom_latin,
CASE
WHEN tx_1.nom_francais IS NULL THEN taxref_1.lb_nom
WHEN tx_1.nom_francais::text = ''::text THEN taxref_1.lb_nom
ELSE tx_1.nom_francais
END AS nom_francais
FROM taxonomie.taxref taxref_1
LEFT JOIN taxonomie.bib_taxons tx_1 ON tx_1.cd_nom = taxref_1.cd_nom
WHERE (taxref_1.cd_nom IN ( SELECT DISTINCT syntheseff.cd_nom
FROM synthese.syntheseff
ORDER BY syntheseff.cd_nom))) tx
JOIN taxonomie.taxref taxref ON taxref.cd_nom = tx.cd_ref
)
FROM taxonomie.taxref taxref_1
LEFT JOIN taxonomie.bib_taxons tx_1 ON tx_1.cd_nom = taxref_1.cd_nom
WHERE (taxref_1.cd_nom IN ( SELECT DISTINCT syntheseff.cd_nom FROM synthese.syntheseff))
) tx
JOIN taxonomie.taxref taxref ON taxref.cd_nom = tx.cd_ref
)
SELECT t.id_taxon,
t.cd_ref,
t.nom_latin,
Expand All @@ -4661,97 +4759,32 @@ CREATE OR REPLACE VIEW synthese.v_tree_taxons_synthese AS
COALESCE(t.nom_ordre, ' Sans ordre dans taxref'::character varying) AS nom_ordre,
COALESCE(t.id_famille, t.id_ordre) AS id_famille,
COALESCE(t.nom_famille, ' Sans famille dans taxref'::character varying) AS nom_famille
FROM ( SELECT DISTINCT t_1.id_taxon,
FROM
(
SELECT DISTINCT t_1.id_taxon,
t_1.cd_ref,
t_1.nom_latin,
t_1.nom_francais,
( SELECT taxref.cd_nom
FROM taxonomie.taxref
WHERE taxref.id_rang = 'KD'::bpchar AND taxref.lb_nom::text = t_1.regne::text) AS id_regne,
t_1.regne AS nom_regne,
CASE
WHEN t_1.phylum IS NULL THEN NULL::integer
ELSE ( SELECT taxref.cd_nom
FROM taxonomie.taxref
WHERE taxref.id_rang = 'PH'::bpchar AND taxref.lb_nom::text = t_1.phylum::text AND taxref.cd_nom = taxref.cd_ref)
END AS id_embranchement,
ph.cd_nom AS id_embranchement,
t_1.phylum AS nom_embranchement,
t_1.phylum AS desc_embranchement,
CASE
WHEN t_1.classe IS NULL THEN NULL::integer
ELSE ( SELECT taxref.cd_nom
FROM taxonomie.taxref
WHERE taxref.id_rang = 'CL'::bpchar AND taxref.lb_nom::text = t_1.classe::text AND taxref.cd_nom = taxref.cd_ref)
END AS id_classe,
cl.cd_nom AS id_classe,
t_1.classe AS nom_classe,
t_1.classe AS desc_classe,
CASE
WHEN t_1.ordre IS NULL THEN NULL::integer
ELSE ( SELECT taxref.cd_nom
FROM taxonomie.taxref
WHERE taxref.id_rang = 'OR'::bpchar AND taxref.lb_nom::text = t_1.ordre::text AND taxref.cd_nom = taxref.cd_ref)
END AS id_ordre,
ord.cd_nom AS id_ordre,
t_1.ordre AS nom_ordre,
CASE
WHEN t_1.famille IS NULL THEN NULL::integer
ELSE ( SELECT taxref.cd_nom
FROM taxonomie.taxref
WHERE taxref.id_rang = 'FM'::bpchar AND taxref.lb_nom::text = t_1.famille::text AND taxref.phylum::text = t_1.phylum::text AND taxref.cd_nom = taxref.cd_ref)
END AS id_famille,
f.cd_nom AS id_famille,
t_1.famille AS nom_famille
FROM taxon t_1) t;

CREATE OR REPLACE VIEW synthese.v_taxons_synthese AS
SELECT DISTINCT
CASE
WHEN (t.nom_francais::text = ''::text OR t.nom_francais IS NULL) AND txr.nom_vern IS NOT NULL AND txr.nom_vern::text <> ''::text THEN txr.nom_vern
WHEN t.nom_francais IS NULL OR txr.nom_vern IS NULL THEN txr.lb_nom
WHEN t.nom_francais::text = ''::text OR txr.nom_vern::text = ''::text THEN txr.lb_nom
ELSE t.nom_francais
END AS nom_francais,
txr.lb_nom AS nom_latin,
CASE
WHEN t.filtre2::text = 'oui'::text THEN true
WHEN t.filtre2::text = 'non'::text THEN false
ELSE NULL::boolean
END AS patrimonial,
CASE
WHEN t.filtre3::text = 'oui'::text THEN true
WHEN t.filtre3::text = 'non'::text THEN false
ELSE NULL::boolean
END AS protection_stricte,
txr.cd_ref,
txr.cd_nom,
txr.nom_valide,
txr.famille,
txr.ordre,
txr.classe,
txr.regne,
prot.protections,
l.id_liste,
l.picto
FROM taxonomie.taxref txr
LEFT JOIN taxonomie.bib_taxons t ON txr.cd_nom = t.cd_nom
JOIN taxonomie.cor_taxon_liste ctl ON ctl.id_taxon = t.id_taxon
JOIN taxonomie.bib_listes l ON l.id_liste = ctl.id_liste AND (l.id_liste = ANY (ARRAY[3, 101, 105, 106, 107, 108, 109, 110, 111, 112, 113]))
LEFT JOIN ( SELECT a.cd_nom,
array_to_string(array_agg((((a.arrete || ' '::text) || a.article::text) || '__'::text) || a.url::text), '#'::text) AS protections
FROM ( SELECT tpe.cd_nom,
tpa.url,
tpa.arrete,
tpa.article
FROM taxonomie.taxref_protection_especes tpe
JOIN taxonomie.taxref_protection_articles tpa ON tpa.cd_protection::text = tpe.cd_protection::text AND tpa.concerne_mon_territoire = true) a
GROUP BY a.cd_nom) prot ON prot.cd_nom = txr.cd_nom
WHERE (txr.cd_nom IN ( SELECT DISTINCT syntheseff.cd_nom
FROM synthese.syntheseff))
ORDER BY
CASE
WHEN (t.nom_francais::text = ''::text OR t.nom_francais IS NULL) AND txr.nom_vern IS NOT NULL AND txr.nom_vern::text <> ''::text THEN txr.nom_vern
WHEN t.nom_francais IS NULL OR txr.nom_vern IS NULL THEN txr.lb_nom
WHEN t.nom_francais::text = ''::text OR txr.nom_vern::text = ''::text THEN txr.lb_nom
ELSE t.nom_francais
END;
FROM taxon t_1
LEFT JOIN taxonomie.taxref ph ON ph.id_rang = 'PH'::bpchar AND ph.cd_nom = ph.cd_ref AND ph.lb_nom::text = t_1.phylum::text AND NOT t_1.phylum IS NULL
LEFT JOIN taxonomie.taxref cl ON cl.id_rang = 'CL'::bpchar AND cl.cd_nom = cl.cd_ref AND cl.lb_nom::text = t_1.classe::text AND NOT t_1.classe IS NULL
LEFT JOIN taxonomie.taxref ord ON ord.id_rang = 'OR'::bpchar AND ord.cd_nom = ord.cd_ref AND ord.lb_nom::text = t_1.ordre::text AND NOT t_1.ordre IS NULL
LEFT JOIN taxonomie.taxref f ON f.id_rang = 'FM'::bpchar AND f.cd_nom = f.cd_ref AND f.lb_nom::text = t_1.famille::text AND f.phylum::text = t_1.phylum::text AND NOT t_1.famille IS NULL
) t;


SET search_path = utilisateurs, pg_catalog;
Expand Down Expand Up @@ -5197,6 +5230,16 @@ ALTER TABLE ONLY cor_fs_taxon ALTER COLUMN id_station_cd_nom SET DEFAULT nextval
ALTER TABLE ONLY t_stations_fs ALTER COLUMN gid SET DEFAULT nextval('t_stations_fs_gid_seq'::regclass);


SET search_path = public, pg_catalog;

--
-- Name: pk_cor_boolean; Type: CONSTRAINT; Schema: public; Owner: -; Tablespace:
--

ALTER TABLE cor_boolean
ADD CONSTRAINT pk_cor_boolean PRIMARY KEY(expression);


SET search_path = contactfaune, pg_catalog;

--
Expand Down Expand Up @@ -8353,6 +8396,17 @@ GRANT ALL ON FUNCTION modify_date_update() TO geonatuser;
GRANT ALL ON FUNCTION modify_date_update() TO PUBLIC;


SET search_path = public, pg_catalog;

--
-- Name: cor_boolean; Type: ACL; Schema: contactfaune; Owner: -
--

REVOKE ALL ON TABLE cor_boolean FROM PUBLIC;
REVOKE ALL ON TABLE cor_boolean FROM geonatuser;
GRANT ALL ON TABLE cor_boolean TO geonatuser;


SET search_path = contactfaune, pg_catalog;

--
Expand Down
Loading

0 comments on commit f7e8281

Please sign in to comment.