6 Alphafold Job Guide

Workflow for creating a alphafold job

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1. Go to Phoenix SkyNet

2. Enter the job list page

3. Click on Create a new job

4. Input job name

5. Choose the computation type

Choose Deep Learning first and then Alphafold.

6. Upload a fasta document

Upload a file in .fasta format.

7. Set Max Template Date

AlphaFold will search for the available templates before the date specified by the Max Template Date parameter，this could be used to avoid certain templates during modeling.

8. Select a preset model

9. Evaluate CCD cost

10. Click on Submit

11. Click on Check

Enter the job list page and click the check button.

12. View the output files

View the generated files during inference.

13. Download logs

You can download the generated logs during inference.

14. Download result files

Download the output result files.

15. Launch a JupyterLab

Launch a JupyterLab. After opening the jupyterLab page, you can write and run python code to view the inference results.

16. Stop Job

During the inference run, you can stop the task at any time by clicking "Stop Job".