fix(preprocessor): improve message for gVCF

Fix-for: #174
PharmGKB · Mar 7, 2024 · 2d4da7d · 2d4da7d
1 parent 209f68f
commit 2d4da7d
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/preprocessor/pharmcat_vcf_preprocessor.py b/preprocessor/pharmcat_vcf_preprocessor.py
@@ -155,7 +155,8 @@
             for file in m_vcf_files:
                 if preprocessor.is_gvcf_file(file):
                     print('%s is a gVCF file, which is not currently supported.\n'
-                          'The PharmCAT VCF Preprocessor will support block gVCF in the future.' % str(file))
+                          'See https://github.com/PharmGKB/PharmCAT/issues/79 for details.\n'
+                          'If this is not a gVCF file, use -G to bypass.' % str(file))
                     sys.exit(1)
 
         m_samples: List[str] = []