Replace --recon-input-pipeline with --input-type

[tsalo]

Closes #46.

Changes proposed in this pull request

• Rename the parameter --recon-input-pipeline to --input-type.

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 9.09091% with 10 lines in your changes missing coverage. Please review.

Project coverage is 33.57%. Comparing base (f356749) to head (36867a0).

Files	Patch %	Lines
qsirecon/workflows/base.py	0.00%	9 Missing ⚠️
qsirecon/workflows/recon/anatomical.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #68   +/-   ##
=======================================
  Coverage   33.57%   33.57%           
=======================================
  Files          56       56           
  Lines        6886     6886           
  Branches      894      894           
=======================================
  Hits         2312     2312           
  Misses       4477     4477           
  Partials       97       97           

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[mattcieslak]

great idea, the recon_ part is unnecessary post The Great Split