move to peetry

.github/workflows/python-app.yml

@@ -26,8 +26,10 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install flake8 pytest
-        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+        python -m pip install flake8 pytest
+        pip install poetry
+        poetry build
+        pip install dist/*.whl
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names

.github/workflows/python-package.yml

@@ -19,8 +19,10 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install flake8 pytest
-        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+        python -m pip install flake8 pytest
+        pip install poetry
+        poetry build
+        pip install dist/*.whl
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names

.github/workflows/python-publish.yml

@@ -21,7 +21,10 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install build
+        python -m pip install flake8 pytest
+        pip install poetry
+        poetry build
+        pip install dist/*.whl
     - name: Build package
       run: python -m build
     - name: Publish package

README.md

@@ -31,7 +31,7 @@ Install with setup.py:
 ```bash
 $ git clone https://github.com/PRIDE-Archive/pridepy
 $ cd pridepy
-$ python setup.py sdist bdist_wheel 
+$ python project.toml sdist bdist_wheel 
 $ pip install dist/pridepy-{version}.tar.gz
 ```
 

project.toml

@@ -0,0 +1,41 @@
+[build-system]
+requires = ["setuptools>=45", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "pridepy"
+version = "0.0.7"
+description = "Python Client library for PRIDE Rest API"
+authors = [
+    {name = "PRIDE Team", email = "[email protected]"},
+]
+readme = "README.md"
+requires-python = ">=3.7"
+keywords = ["PRIDE", "python", "client", "REST", "API"]
+license = {text = "Apache-2.0", file = "LICENSE"}
+dependencies = [
+    "requests",
+    "ratelimit",
+    "click",
+    "pytest",
+    "setuptools",
+    "plotly",
+    "tqdm",
+    "boto3",
+    "botocore",
+    "httpx",
+]
+
+[project.urls]
+Homepage = "https://github.com/PRIDE-Archive/pridepy"
+
+[project.scripts]
+pridepy = "pridepy:main"
+
+[tool.setuptools]
+packages = ["pridepy"]
+py-modules = ["pridepy"]
+
+[tool.setuptools.package-data]
+"*" = ["*.txt", "*.md"]
+"aspera" = ["**/*"]

recipe/meta.yaml

@@ -19,7 +19,7 @@ requirements:
   host:
     - python >=3.9
     - pip
-    - setuptools
+    - poetry-core >=1.2.0
   run:
     - requests~=2.31.0
     - ratelimit~=2.2.1