include inputs when relabelling (geno and sample files are unchanged)

PGScatalog · Apr 18, 2024 · 2158fcf · 2158fcf
1 parent 6505818
commit 2158fcf
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/modules/local/plink2_relabelbim.nf b/modules/local/plink2_relabelbim.nf
@@ -21,9 +21,9 @@ process PLINK2_RELABELBIM {
     tuple val(meta), path(geno), path(variants), path(pheno)
 
     output:
-    tuple val(meta), path("${output}.bed"), emit: geno
-    tuple val(meta), path("${output}.bim.zst"), emit: variants
-    tuple val(meta), path("${output}.fam"), emit: pheno
+    tuple val(meta), path("${output}.bed"), emit: geno, includeInputs: true
+    tuple val(meta), path("${output}.bim.zst"), emit: variants, includeInputs: false
+    tuple val(meta), path("${output}.fam"), emit: pheno, includeInputs: true
     tuple val(meta), path("${output}.vmiss.gz"), emit: vmiss
     path "versions.yml"           , emit: versions
 

diff --git a/modules/local/plink2_relabelpvar.nf b/modules/local/plink2_relabelpvar.nf
@@ -21,9 +21,9 @@ process PLINK2_RELABELPVAR {
     tuple val(meta), path(geno), path(pheno), path(variants)
 
     output:
-    tuple val(meta), path("${output}.pgen"), emit: geno
-    tuple val(meta), path("${output}.pvar.zst") , emit: variants
-    tuple val(meta), path("${output}.psam"), emit: pheno
+    tuple val(meta), path("${output}.pgen"), emit: geno, includeInputs: true
+    tuple val(meta), path("${output}.pvar.zst") , emit: variants, includeInputs: false
+    tuple val(meta), path("${output}.psam"), emit: pheno, includeInputs: true
     tuple val(meta), path("${output}.vmiss.gz"), emit: vmiss
     path "versions.yml"            , emit: versions