Clean-ups #401
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Clean-ups #401
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chinmayshah99
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Nov 17, 2021
chinmayshah99
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* Added machine learning and mechanisms directory * Added files for utils Files include: - acountant.py (for BudgetAccountant purposes) - utils.py - validation.py * Directory change for machine learning & mechanism Anything related to machine learning and mechanism is located in the "ml" directory * Added function to check epsilon delta in validation.py * Added function to check min max bounds in validation.py * Added function to clip 2-d array to given maximum norm in validation.py * Added function to clip 2-d array to given bounds in validation.py * Added gunction to set global seed in utils.py * Added function to copy docstring in ml/util/utils.py * Added subclass Budget for privacy budgets epsilon delta * Add class BudgetError for exceeded privacy budget error * Added class for privacy leakage warning * Added class for incompatible arguments PyDP * Added function for warning incompitable argument * Added class for budget accountant The class added main goal is to allocate privacy budget * Added file as base for mechanism and add base class * Added methods for base class * Added class for truncated and folded mechanism * Added files for laplace & geometric mechanism * Added class as main laplace mechanism * Added class for truncated laplacian * Added class for folder laplacian * Added class for main geometric mechanism * Added class for truncated geometric * Added file for naive bayes model with model class * FIX: Move ml directory to src/pydp directory * FEAT: Added LaplaceBoundedDomain class in laplce mechanism file * Added folder that contains machine learning capabilities * Apply Python and C++ styling * Added type:ignored on unresolved imports * Python formatting with Black after adding type:ignore * Fix mypy test errors in ml directory * Fix apply Python format with blac * Add source link to ml directory files * Removed extra special characters * Added example notebook for Naive Bayes implementation * Added Jupyter Notebook for PyDP NB comparison * Moved matplotlib as dev dependincy * change setup msbuild to version 1.0.2 * Test remove python 3.5 in Windows workflow * Add back python 3.5 for Windows build * Remove python-dp in docs/requirements.txt * Change version to cehck build doc action * conf.py in /docs append pydp build path * Change ubuntu version for build docs action * Change Python to 3.6 in build docs action * Revert back ubuntu and Python versions * Add pre-build-command in sphinx-action@master * Fix pre-build-command syntax * Change pre-build-comman for sphinx-action * pre-build-command install software-properties-common * Fix pre-build-command * Fix pre-build-command * Fix pre-build-command * Change ubuntu version for build doc action * Change Python Version to 3.8 * Removed test limited to dev branch. This test would run on all Pull requests now rather than just PR to dev. Other than that, tests are to be triggered if there's a change in ipynb too. * Wrapper for numerical mechanism class [Continuation from #372] (#380) * initial addition of partition selection * corrected instantiation to 'builder.Build' instead * build works, TODO: deal with passing Laplace/Gaussian mechanims builders * post-review changes, moved partition selection python related code to own submodule * fixed some formatting * Added documentation * post formatting * added tests for partition selection * moved imports for patition_selection * clarified TODO dependency * attempt to resolve linting issues * * Added exports in algorithms.partition_selection * Replaced the Create*PartitionStrategy functions with a template function and instantiantions * revert a to latest stable commit * restore the correct commit for google-dp submodule * added python bindings for numerical mechanisms * added some python files * fixed prereqs_linux.sh script * saving changes * build + tests work * added docs for numerical mechanisms * Fix Bazel build Bazel failed to build since the name of the workspace was inconsistent with the DP Library. This commit also fixes the order in which we install dependencies of the DP Lib. Additionally, on Linux we used the wrong compiler flags, which is now fixed in the .bazelrc. * Revert "Fix Bazel build" * Update README.md (#385) * Update README.md Changed "Currently supports Linux and macOS (Windows support coming soon)" to "Compatible with all three types of Operating Systems - Linux, macOS, and Windows" * Update README.md Changed "Currently supports Linux and macOS (Windows support coming soon)" to "Compatible with all three types of Operating Systems - Linux, macOS, and Windows" * sha upgrade and added temporary fix for bazel reference * upgraded SHA * removal of functions and dependency in accordance with SHA upgrade * fixed build file reference issue for test cases * build file reference fix * Made the system release ready * Fixed the ubuntu version for google collab * fixed the BUILD file naming * c++ styling * fixed the RC version * Attempt to trigger the find replace in BUILD file * added find replace in version scripts * updated the release number to 1.1.1 * Fixed the bazel build absolute reference * removed the temporary fix in the build actions * fix * fix * Removing unused code (#400) * clean-ups * tiny fix * format * format c++ * Add support for categorical features for Laplace mechanism * Clean-ups (#401) Removing unused code and using c++ style guidelines * Improve Laplace Demo Notebook and add minimal README (#404) * Improve Laplace Demo NB and add minimal README * Improve the Conclusion Section * Add back the old conclusion * Removed partial privacy budget + Update Google C++ DP library to the latest commit and fix compilation errors (#405) * update * update * remove unintended changed * tests * FIX: Change Google DP Commit Hash * FEAT: SKLearn Laplace Mechanism use Google DP Modifie the `LaplaceMechanism`class in `/src/pydp/ml/mechanisms/sklearn_pipeline.py` so that it uses `LaplaceDistribution` class from Google DP` * Fix typo in build-docs.yml * FIX: Stling pythong and cpp * FIX: Styling python and cpp * FIX: Typo in build-docs.yml * FIX: Changed clang-format version * FIX: Try clang-format 12 * Update to the latest version of Google building block library (#415) * remove privacy budget * fixes * fixes * tests * FIX: Change clang format action version * Reset HEAD Co-authored-by: Chinmay Shah <[email protected]> Co-authored-by: Lev Zlotnik <[email protected]> Co-authored-by: Christoph Dibak <[email protected]> Co-authored-by: Abin (אבין ברגיס) <[email protected]> Co-authored-by: FIRhinmay <[email protected]> Co-authored-by: Vadym Doroshenko <[email protected]> Co-authored-by: dvadym <[email protected]> Co-authored-by: Saurav Maheshkar <[email protected]>
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This PR contains:
1.Removing using namespace std (prohibited by Google C++styleguide)
2.Removed unused file helper_class.hpp
3.Added #include "proto/data.pb.h" for proto.cc (since Output proto in data.pb.h)