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I fixed the problem that you cannot click through the board in desktop mode. For me it works now. But I can only test it on X11 Linux. All this is very platform dependent. Someone must test this on Windows, Wayland Linux and MacOS, with Qt6, in the presenter mode and carefully review my changes. I think, my commit is quite a risky thing. So I don't know if and how you developers prefer to change such things. At some time this thing must be fixed.
Honestly I would recommend you to make the floating palettes not children of the board, before accepting my commit. Because in the current way, there happen too many things, which we don't have fully under control. The floating palettes disappear or become irresponsive together with the board. But you never want that. And you also don't want such a complicated masking mechanism. My solution is that the palette becomes a Qt-Window temporarily, but leaving the parent in. That works currently. But I would not be surprised if in future Qt versions this cheat stops working.