test

.github/workflows/test.yaml

@@ -11,8 +11,6 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
-      with:
-        submodules: 'true'
 
     - name: Setup Fortran
       uses: awvwgk/setup-fortran@main
@@ -21,23 +19,38 @@ jobs:
         compiler: gcc
         version: 11
 
-    - name: Setup Python
-      uses: actions/setup-python@v3
+    - uses: mamba-org/setup-micromamba@v2
       with:
-        python-version: 3.9
+        environment-name: test-env
+        create-args: >-
+          python
+          numpy
+          scipy
+          numba
+          h5py
+          cmake 
+          fypp 
+          clang 
+          gfortran
+          valgrind
 
-    - name: install dependencies
+    - name: Install Valgrind
       run: |
-        python -m pip install --upgrade pip
-        python -m pip install h5py fypp
-        sudo apt update
         sudo apt install valgrind
-        sudo apt install libhdf5-dev
 
     - name: configure cmake
-      run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}}
+      shell: bash -el {0}
+      run: |
+        export CC="$(which clang)"
+        export CXX="$(which clang)"
+        export FC="$(which gfortran)"
+        export CONDA_PREFIX_SAVE=$CONDA_PREFIX
+        unset CONDA_PREFIX
+        cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DCMAKE_PREFIX_PATH=$CONDA_PREFIX_SAVE
+        export CONDA_PREFIX=$CONDA_PREFIX_SAVE
 
     - name: build fortran
+      shell: bash -el {0}
       run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}}
 
     - name: test fortran
@@ -47,4 +60,5 @@ jobs:
         valgrind --error-exitcode=1 --leak-check=full ./tests/memtest_evo
 
     - name: build python
-      run: python -m pip install . -v
+      shell: bash -el {0}
+      run: python -m pip install --no-deps --no-build-isolation . -v