A Python module and CLI tool for converting proprietary microscopy formats to TIFF with JSON metadata sidecar files.
Microtiff is installable via PIP:
pip install microtiff
Both supported modules and modules working with errata are listed below.
| Sensor | Status | Errata/Notes |
|---|---|---|
| Imaging FlowCytobot/IFCB (.adc, .hdr, .roi) | ✅ | |
| LISST-Holo (.pgm) | ✅ | Only extracts raw interference field, does not reconstruct images. Metadata export broken. |
| LISST-Holo2 (.pgm) | ✅ | See above |
| FlowCam | ❌ | In active development |
- pillow
- numpy
Made with the help of: Sari Giering, Will Major and Mojtaba Masoudi