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Convert checkout.sh to manage_externals #3

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9 of 12 tasks
KateFriedman-NOAA opened this issue Dec 17, 2019 · 24 comments
Closed
9 of 12 tasks

Convert checkout.sh to manage_externals #3

KateFriedman-NOAA opened this issue Dec 17, 2019 · 24 comments
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@aerorahul @WalterKolczynski-NOAA
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feature New feature or request wontfix This will not be worked on

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@KateFriedman-NOAA
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KateFriedman-NOAA commented Dec 17, 2019 •
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Original issue on VLab: https://vlab.ncep.noaa.gov/redmine/issues/66742

Replace sorc/checkout.sh with manage_externals:

https://github.com/ESMCI/manage_externals

Gave demo of manage_externals and users seemed interested. Should resolve issues with lack of flexibility in checkout.sh.

  • Establish initial Externals.cfg
  • Install v1.1.7 manage_externals tag on WCOSS-Dell
  • Install v1.1.7 manage_externals tag on WCOSS-Cray
  • Install v1.1.7 manage_externals tag on Hera
  • Install v1.1.8 manage_externals tag on WCOSS-Dell
  • Install v1.1.8 manage_externals tag on WCOSS-Cray
  • Install v1.1.8 manage_externals tag on Hera
  • Create manage_externals module on WCOSS-Dell (replaces prior install)
  • Create manage_externals module on WCOSS-Cray (replaces prior install)
  • Create manage_externals module on Hera (replaces prior install)
  • Add note about WCOSS-Cray ssh.variant change to wiki post commit
  • Complete commit
@KateFriedman-NOAA KateFriedman-NOAA added the feature New feature or request label Dec 17, 2019
@KateFriedman-NOAA KateFriedman-NOAA self-assigned this Dec 17, 2019
@KateFriedman-NOAA
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Example Externals.cfg from prior tests:

# External sub-modules of global-workflow

[NEMSfv3gfs]
tag = nemsfv3gfs_beta_v1.0.18
local_path = sorc/fv3gfs.fd
repo_url = ssh://vlab.ncep.noaa.gov:29418/NEMSfv3gfs
protocol = git
required = True

[GSI]
tag = fv3da.v1.0.43
local_path = sorc/gsi.fd
repo_url = ssh://vlab.ncep.noaa.gov:29418/ProdGSI
protocol = git
required = True

[EMC_post]
tag = ncep_post.v8.0.27e
local_path = sorc/gfs_post.fd
repo_url = ssh://vlab.ncep.noaa.gov:29418/EMC_post
protocol = git
required = True

[UFS_UTILS]
tag = v1.0.0
local_path = sorc/ufs_utils.fd
repo_url = ssh://vlab.ncep.noaa.gov:29418/UFS_UTILS
protocol = git
required = True

[EMC_gfs_wafs]
tag = gfs_wafs.v5.0.9
local_path = sorc/gfs_wafs.fd
repo_url = ssh://vlab.ncep.noaa.gov:29418/EMC_gfs_wafs
protocol = git
required = True

[externals_description]
schema_version = 1.0.0

@KateFriedman-NOAA
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Created new branch off of develop for this work: feature/manage_externals

KateFriedman-NOAA added a commit that referenced this issue Jan 27, 2020
@KateFriedman-NOAA
Issue #3 - initial add of manage_externals and needed Externals.cfg. …
bfc7bb0 
…Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds.
@KateFriedman-NOAA
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Added copy of manage_externals under util folder. Created initial Externals.cfg. Test on Hera worked as intended.

Did a little house-keeping and removed scripts/files associated with prod_util and grib_util builds which are no longer supported. Also introduced .gitignore file to make things cleaner.

KateFriedman-NOAA added a commit that referenced this issue Jan 28, 2020
@KateFriedman-NOAA
Issue #3 - remove copy of manage_externals under util and add README.…
cf00863 
…md file
@KateFriedman-NOAA
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Removed copy of manage_externals from branch, will installed on supported platforms. Introduced README.md to document dependency on manage_externals for public users.

Sync merged feature/manage_externals with develop branch.

@KateFriedman-NOAA
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Installed manic-v1.1.6 tag on Hera:

/scratch1/NCEPDEV/global/glopara/git/manage_externals/manic-v1.1.6

...and on WCOSS-Dell (Venus and Mars):

/gpfs/dell2/emc/modeling/noscrub/emc.glopara/git/manage_externals/manic-v1.1.6

...and on WCOSS-Cray (Surge and Luna):

/gpfs/hps3/emc/global/noscrub/emc.glopara/git/manage_externals/manic-v1.1.6

KateFriedman-NOAA added a commit that referenced this issue Feb 6, 2020
@KateFriedman-NOAA
Issue #3 - reduce hashes down to minimum 8 characters
d9ea1ac
@KateFriedman-NOAA
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Tested branch checkout using new manage_externals install on Hera (worked nicely):

-bash-4.2$ /scratch1/NCEPDEV/global/glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

-bash-4.2$

@KateFriedman-NOAA
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Test on Luna received this error:

LUNA-llogin1 > /gpfs/hps3/emc/global/noscrub/emc.glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, ERROR:root:Command '[u'git', u'clone', u'--quiet', u'ssh://vlab.ncep.noaa.gov:29418/NEMSfv3gfs', u'fv3gfs.fd']' returned non-zero exit status 128
ERROR:root:Failed with output:
    fatal: ssh variant 'simple' does not support setting port

ERROR: In directory
    /gpfs/hps3/emc/global/noscrub/Kate.Friedman/git/feature-manage_externals/sorc
Process did not run successfully; returned status 128:
    git clone --quiet ssh://vlab.ncep.noaa.gov:29418/NEMSfv3gfs fv3gfs.fd
See above for output from failed command.

Issue resolved by adjusting git config ssh setting:

git config --global ssh.variant ssh

Will need to add a note about this to wiki section for checkout.

Test checkout worked well using newly install manage_externals tag on Luna:

LUNA-llogin1 > /gpfs/hps3/emc/global/noscrub/emc.glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

LUNA-llogin1 >

Same error, fix, and then successful test on Surge.

@KateFriedman-NOAA
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Successful test on Mars and Venus:

[Kate.Friedman@m71a2 feature-manage_externals]$ /gpfs/dell2/emc/modeling/noscrub/emc.glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

[Kate.Friedman@m71a2 feature-manage_externals]$

Note: emc_gfs_wafs not checked out since it is set as optional.

KateFriedman-NOAA added a commit that referenced this issue Feb 13, 2020
@KateFriedman-NOAA
Issue #3 - sync merge with develop branch
e46b175
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Tested feature/manage_externals branch on Hera after sync merging with the develop branch. Got to see a typical Hera error in action (frequent connection issues with GitHub):

-bash-4.2$ /scratch1/NCEPDEV/global/glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ERROR:root:Command '[u'git', u'fetch', u'--quiet', u'--tags', 'origin']' returned non-zero exit status 128
ERROR:root:Failed with output:
    fatal: unable to access 'https://github.com/NOAA-EMC/EMC_post.git/': Failed connect to github.com:443; Connection timed out

ERROR: In directory
    /scratch1/NCEPDEV/global/Kate.Friedman/git/feature-manage-externals/sorc/gfs_post.fd
Process did not run successfully; returned status 128:
    git fetch --quiet --tags origin
See above for output from failed command.

ERROR:root:Failed with output:
    fatal: unable to access 'https://github.com/NOAA-EMC/EMC_post.git/': Failed connect to github.com:443; Connection timed out

ERROR: In directory
    /scratch1/NCEPDEV/global/Kate.Friedman/git/feature-manage-externals/sorc/gfs_post.fd
Process did not run successfully; returned status 128:
    git fetch --quiet --tags origin
See above for output from failed command.


ERROR: Failed with output:
    fatal: unable to access 'https://github.com/NOAA-EMC/EMC_post.git/': Failed connect to github.com:443; Connection timed out

ERROR: In directory
    /scratch1/NCEPDEV/global/Kate.Friedman/git/feature-manage-externals/sorc/gfs_post.fd
Process did not run successfully; returned status 128:
    git fetch --quiet --tags origin
See above for output from failed command.

A retry a minute later was successful (no GitHub connection issues) and allowed me to see it checking the components already checked out before proceeding to the others:

-bash-4.2$ /scratch1/NCEPDEV/global/glopara/git/manage_externals/manic-v1.1.6/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

-bash-4.2$

@KateFriedman-NOAA
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Tests using the manic-v1.1.6 tag failed (sub-modules not checked out for fv3gfs and gsi), that tag does not include fixes made later (which were in master copy used for initial testing). Switched to later manic-v1.1.7 and it worked. Installed manic-v1.1.7 on machines and removed manic-v1.1.6.

Will update checklist above for new tag.

KateFriedman-NOAA added a commit that referenced this issue Feb 14, 2020
@KateFriedman-NOAA
Issue #3 - Updated README with new manic tag v1.1.7
f662fff
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Example of what it looks like when cloning on Hera hangs (as it often does sadly, especially with the GSI checkout which is huge):

-bash-4.2$ /scratch1/NCEPDEV/global/glopara/git/manage_externals/manic-v1.1.7/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi,

Command 'git submodule update --init --recursive'
from directory /scratch1/NCEPDEV/global/Kate.Friedman/git/feature-manage-externals/sorc/gsi.fd
has taken 300 seconds. It may be hanging.

The command will continue to run, but you may want to abort
manage_externals with ^C and investigate. A possible cause of hangs is
when svn or git require authentication to access a private
repository. On some systems, svn and git requests for authentication
information will not be displayed to the user. In this case, the program
will appear to hang. Ensure you can run svn and git manually and access
all repositories without entering your authentication information.


emc_verif-global,

-bash-4.2$

I let it keep doing its thing and manage_externals kept trying to clone GSI and then when successful it moved on to the final checkout (emc_verif-global).

What a good (hang-free) checkout looks like on Mars:

[Kate.Friedman@m72a1 feature-manage_externals]$ /gpfs/dell2/emc/modeling/noscrub/emc.glopara/git/manage_externals/manic-v1.1.7/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

[Kate.Friedman@m72a1 feature-manage_externals]$

KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020
@KateFriedman-NOAA
Issue #3 - Merge branch 'develop' into feature/manage_externals
40084e6
KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020
@KateFriedman-NOAA
Issue #3 - update EMC_verif-global tag in Externals.cfg after sync wi…
830c73f 
…th develop
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Sync merged with develop branch and then updated EMC_verif-global tag in externals config.

New manage_externals version released on Tuesday (manic-v1.1.8). Have installed on supported platforms and will now test and update README if good.

@KateFriedman-NOAA
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Test of new manic_v1.1.8 tag was successful on Venus:

[Kate.Friedman@v72a2 feature-manage_externals]$ /gpfs/dell2/emc/modeling/noscrub/emc.glopara/git/manage_externals/manic-v1.1.8/checkout_externals
Processing externals description file : Externals.cfg
Checking status of externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_gfs_wafs, emc_verif-global,
Checking out externals: nemsfv3gfs, emc_post, ufs_utils, gsi, emc_verif-global,

[Kate.Friedman@v72a2 feature-manage_externals]$ git status
On branch feature/manage_externals
Your branch is up-to-date with 'origin/feature/manage_externals'.

nothing to commit, working tree clean
[Kate.Friedman@v72a2 feature-manage_externals]$ cd sorc/
[Kate.Friedman@v72a2 sorc]$ ls -ltr
total 11296
...
drwxr-sr-x 17 Kate.Friedman emcmodel  2048 Mar  6 15:25 fv3gfs.fd
drwxr-sr-x 11 Kate.Friedman emcmodel  2048 Mar  6 15:26 gfs_post.fd
drwxr-sr-x 11 Kate.Friedman emcmodel   512 Mar  6 15:26 ufs_utils.fd
drwxr-sr-x 15 Kate.Friedman emcmodel  2048 Mar  6 15:27 gsi.fd
drwxr-sr-x  9 Kate.Friedman emcmodel   512 Mar  6 15:30 verif-global.fd

Test of build_all.sh after running manage_externals was successful:

[Kate.Friedman@v72a2 sorc]$ sh build_all.sh
Creating logs folder
Creating ../exec folder
 .... Building fv3 ....
 .... Building gsi ....
 .... Building ncep_post ....
 .... Building ufs_utils ....
 .... Building gaussian_sfcanl and nst_tf_chg ....
 .... Building enkf_chgres_recenter ....
 .... Building tropcy_NEMS ....
 .... Building gdas ....
 .... Building gfs_fbwndgfs ....
 .... Building gfs_overpdtg2 ....
 .... Building gfs_wintemv ....
 .... Building gfs_bufrsnd ....
 .... Building fv3nc2nemsio ....
 .... Building regrid_nemsio ....
 .... Building gfs_util ....
 .... prod_util build not currently supported ....
 .... grib_util build not currently supported ....

 .... Build system finished ....
[Kate.Friedman@v72a2 sorc]$

Will proceed with updating README to reflect new manic version.

KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020
@KateFriedman-NOAA
Issue #3 - updated link_fv3gfs.sh to adjust wafs links
e602cd3
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Ran link script after build and noticed wafs links were broken throughout which is understandable since manage_externals didn't check it out since wafs is optional. Updated link_fv3gfs.sh to only make wafs links if sorc/gfs_wafs.fd folder exists. Removed machine dependency on wafs links.

KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020
@KateFriedman-NOAA
Issue #3 - updated README with new manic version
8699b46
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Updated README with new manic version.

This is ready for a PR. Will initiate PR and ask for reviewers to test.

@KateFriedman-NOAA
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Initiated PR #29

KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020
@KateFriedman-NOAA
Issue #3 - remove prod_util and grib_util sections from build_all.sh,…
e83b90d 
… removed elsewhere already
KateFriedman-NOAA added a commit that referenced this issue Mar 6, 2020
@KateFriedman-NOAA
Issue #3 - added explicit config flag example for checkout_externals …
622167d 
…in README and blurb about this replacing checkout.sh
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KateFriedman-NOAA commented Mar 11, 2020 •
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Received initial buy-in from NCO (email with Steven Earle). No requirement to keep checkout.sh but will keep during transition period. Proceeding with commit (PR #29).

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Completed PR #29. Need to work on setting up modules.

jkhender added a commit to jkhender/global-workflow that referenced this issue Mar 20, 2020
@jkhender
merged 19Mar feature/gfsv16b branch into gmtb_v16beta
350193c 
   Squashed commit of the following:

   commit 586d0994aab2348c1deea521b37183ddf0a8f2d7
   Author: kate.friedman <[email protected]>
   Date:   Thu Mar 19 14:01:16 2020 +0000

       Issue #1 - update EMC_verif-global to tag verif_global_v1.6.0 in Externals.cfg

   commit f412f2ca8071baa6bd91f641c1fd8102e9271bef
   Author: russ.treadon <[email protected]>
   Date:   Thu Mar 19 13:53:34 2020 +0000

       Issue #1:  update EMC_verif-global to tag verif_global_v1.6.0

   commit 94abe6a1caca4724fbc580d58928a6cf74a65590
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 18 19:02:09 2020 +0000

       Fix syntax error in setup_workflow_fcstonly.py

   commit 06ff92be074bac2728055a62ce0fa263a4d13cf6
   Author: Guang Ping Lou <[email protected]>
   Date:   Tue Mar 17 18:10:37 2020 +0000

       modify job card for tests

   commit a2b76f1d402c8568612dc727ebf36b548748589d
   Author: Guang Ping Lou <[email protected]>
   Date:   Tue Mar 17 18:10:04 2020 +0000

       modify namsnd TIMSTN

   commit 81bc3fc4090c4fd3bdec070abd9c117d5a09491d
   Author: Guang Ping Lou <[email protected]>
   Date:   Tue Mar 17 18:09:24 2020 +0000

       modify collectives mpmd design

   commit 9cbf9be8ea2a959a6711c10838ba46347451b7d1
   Author: Guang Ping Lou <[email protected]>
   Date:   Tue Mar 17 18:08:41 2020 +0000

       modify config.resources for postsnd number of tasks

   commit e3945e03031db23dbb8681e3d1034cc07377ae2d
   Author: russ.treadon <[email protected]>
   Date:   Mon Mar 16 10:38:07 2020 +0000

       Issue #1:  add logic to check WAVE_CDUMP prior to setting npe_fcst_gfs

   commit 6fdc6365fa13c77f01ae0cdb82e74bbbd149f914
   Author: russ.treadon <[email protected]>
   Date:   Mon Mar 16 10:35:14 2020 +0000

       Issue #1: DA workflow updates for GFS v16 (does not change results)

   commit 91610f80cef8911ac6aaae2ded67a95b4ff1d061
   Author: russ.treadon <[email protected]>
   Date:   Wed Mar 11 17:25:36 2020 +0000

       Issue #1:  update Externals.cfg to GFS v16 components

   commit 7dcf23281cddb9aabc20c73ec077a9a52ded56b8
   Merge: 55130516 057b2a82
   Author: russ.treadon <[email protected]>
   Date:   Wed Mar 11 17:21:33 2020 +0000

       Issue #1:  Merge branch 'develop' at 057b2a8 into feature/gfsv16b

   commit 057b2a82fa43f7bc36c3e757ca7d48fb86b9541c
   Merge: 0377d20f 622167d5
   Author: Kate Friedman <[email protected]>
   Date:   Wed Mar 11 12:00:58 2020 -0400

       Merge pull request #29 from NOAA-EMC/feature/manage_externals

       Issue #3 - Introduce manage_externals as replacement for checkout.sh

   commit 55130516cea5ea67b758b52c9445aca667e1c35a
   Author: kate.friedman <[email protected]>
   Date:   Mon Mar 9 13:59:44 2020 +0000

       Add ability to have wave jobs depending on cdump

   commit 622167d5fb3322921a1702639ebccb42da1f5e1b
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 18:20:31 2020 +0000

       Issue #3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh

   commit e83b90d50999f64ed5208d94a8cceb8179c9395f
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 17:00:15 2020 +0000

       Issue #3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already

   commit 8699b46aa1797e8dd29edff1d4bd3b511ad5cb1c
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 16:30:54 2020 +0000

       Issue #3 - updated README with new manic version

   commit e602cd3d536b55b86b04285aedd5781d8d3a9f82
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 16:27:57 2020 +0000

       Issue #3 - updated link_fv3gfs.sh to adjust wafs links

   commit 830c73f430d70cc516dea419a8969c6fd9fc0910
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 15:21:45 2020 +0000

       Issue #3 - update EMC_verif-global tag in Externals.cfg after sync with develop

   commit 40084e67810d21366d0e9af6d9937c29aa4965ad
   Merge: f662fffa 0377d20f
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 15:18:52 2020 +0000

       Issue #3 - Merge branch 'develop' into feature/manage_externals

   commit cfa5be4b414f67efa8eb17c8fe5060fe94cd48ea
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 14:05:29 2020 +0000

       Issue #1 - remove gfswave restart archival

   commit 85b3a1d24e89c60e9977ecc549656a0145caeb8b
   Author: russ.treadon <[email protected]>
   Date:   Thu Mar 5 18:51:22 2020 +0000

       Issue #1:  update postsnd section of config.resources

   commit 6c8dc92953e5c003882ffbb8376a8b1b2c8668d2
   Author: russ.treadon <[email protected]>
   Date:   Thu Mar 5 18:40:38 2020 +0000

       Issue #1:  update config files to be consistent with settings in pre-implementation GFS v16 real-time and retrospective parallels

        * parm/config/config.anal - reduce second outer loop iteration count for gfs
        * parm/config/config.epos - add ENKF_SPREAD to toggle on/YES or off/NO generation of ensemble spread files
        * parm/config/config.fcst - set adjust_dry_mass for GDAS (true) and GFS (false)
        * parm/config/config.fv3 - remove nth_efcs, set C384 nth_fv3=1
        * parm/config/config.resources - set nth_efcs to nth_fv3 (default 2)

   commit a107109d8fdd0292a3017f26e56863fbb28a63ce
   Author: kate.friedman <[email protected]>
   Date:   Thu Mar 5 16:08:23 2020 +0000

       Fixed bug in config.fcst related to extra then

   commit 0de559a088ac670f2b105168988c18ee1b57488a
   Author: russ.treadon <[email protected]>
   Date:   Thu Mar 5 15:55:50 2020 +0000

       Issue #1:  update exglobal_fcst_nemsfv3gfs.sh and checkout.sh

        * scripts/exglobal_fcst_nemsfv3gfs.sh - turn on adjust_dry_mass with dry_mass=98320.0, turn off iau_drymassfixer

        * sorc/checkout.sh - update to model tag GFS.v16.0.1

   commit ce23e52730a9f6fe20215cb47563dd6f2dcb254a
   Merge: fa7bca5a 0377d20f
   Author: russ.treadon <[email protected]>
   Date:   Thu Mar 5 15:36:50 2020 +0000

       Issue #1:  Merge branch 'develop' at 0377d20 into feature/gfsv16b

   commit 0377d20f3d019f77a47fc9860d6146fd3c8e5d94
   Merge: 1b359dbe 25524675
   Author: Kate Friedman <[email protected]>
   Date:   Thu Mar 5 08:43:16 2020 -0500

       Merge pull request #28 from NOAA-EMC/feature/metplus2

       Issue #8 - add switch for MET+ jobs

   commit 25524675a63e59829655bbd9a09abc4dca246357
   Author: kate.friedman <[email protected]>
   Date:   Thu Mar 5 13:31:02 2020 +0000

       Issue #8 - add switch for MET+ jobs

   commit fa7bca5a5fb26886219190e9e5e5d6efb9f9ddab
   Merge: af73a39f cd67f975
   Author: Kate Friedman <[email protected]>
   Date:   Thu Mar 5 08:08:57 2020 -0500

       Merge pull request #25 from NOAA-EMC/feature/wave2global

       Feature/wave2global into feature/gfsv16b

   commit cd67f97592227fea0238327dade887d4584300c3
   Merge: c72d7b5b af73a39f
   Author: kate.friedman <[email protected]>
   Date:   Thu Mar 5 13:03:10 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit c72d7b5bca4a67e83916edd17fb0e5c4612a7867
   Author: Jose-Henrique Alves <[email protected]>
   Date:   Wed Mar 4 23:53:41 2020 -0500

       Clean up exwave_post_sbs

   commit 2e738f20930dfd7d5216920ec7cc26774be811f3
   Author: Henrique Alves <[email protected]>
   Date:   Thu Mar 5 04:03:44 2020 +0000

       Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh.

   commit b7638436b1e737077fbb2dad705e7ed157df261e
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 4 21:02:04 2020 +0000

       Fix to JWAVE_PREP to look back a day for rtofs

   commit 33cf0fc0f2a5d3b3ca749c9941835398f94e7606
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 4 19:59:56 2020 +0000

       Adjustments after going through PR review

   commit 1b359dbeb31b94382619dfc9c67e77fffe46aaa0
   Merge: 0359d342 31bb7d32
   Author: Kate Friedman <[email protected]>
   Date:   Wed Mar 4 10:19:36 2020 -0500

       Merge pull request #26 from NOAA-EMC/feature/metplus

       Feature/metplus - refactored MET+ jobs to resolve timing issues

   commit 5c8fa3dd2666b7fd90b473fb12629016ef402e3e
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 4 13:03:12 2020 +0000

       Adjust restart_interval if-blocks for DOIAU=YES in configs

   commit 2b337a8f8c900146905915032826faf9e6f07dc0
   Merge: a4daafee e0a1a0ae
   Author: Henrique Alves <[email protected]>
   Date:   Tue Mar 3 18:31:09 2020 +0000

       Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global

   commit a4daafeecaf3fed38e637389ab5f4041b5139a4c
   Author: Henrique Alves <[email protected]>
   Date:   Tue Mar 3 18:30:58 2020 +0000

       Adjustment to waveprep resources to match numbger of rtofs files, bugfix on generation of ascii spectral data

   commit e0a1a0aeb4066ab834fd93a86780196f55a7a447
   Author: kate.friedman <[email protected]>
   Date:   Mon Mar 2 18:45:50 2020 +0000

       Fix gdasfcst dep on gldas

   commit 817f8faa6b0c71ef970da302d6e46b57c9ea8129
   Merge: 48ed4c5f 203d1747
   Author: kate.friedman <[email protected]>
   Date:   Mon Mar 2 13:41:13 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit 48ed4c5f4a6b0093941a97d475abdb6bed2937e5
   Author: Henrique Alves <[email protected]>
   Date:   Mon Mar 2 04:22:02 2020 +0000

       General cleanup. wavepostsbs wall time limit matches gfsfcst walltime .

   commit 4af83a430a8bb58f83d686535d39d9745de9ab6c
   Author: Henrique Alves <[email protected]>
   Date:   Sun Mar 1 02:51:02 2020 +0000

       Cleaning up prior to merging to gfsv16b

   commit 14f52dd35b7d6a1a9b98cff0da2426015cfabd3d
   Merge: 4400d7c3 d39ba74d
   Author: Henrique Alves <[email protected]>
   Date:   Sat Feb 29 18:23:17 2020 +0000

       Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global

   commit 4400d7c3e5e26bacc0ba892ef3178d4d906d57a8
   Author: Henrique Alves <[email protected]>
   Date:   Sat Feb 29 18:23:13 2020 +0000

       Changes to feal with waveprep and wavepost

   commit d39ba74d71b5bd5c510eb32cac17facdbe5a9a49
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 28 19:01:02 2020 +0000

       Removed extra forward slashes in wave part of hpssarch_gen.sh

   commit 82889365da44196804b7d751a1c8c5992ca102ea
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 28 18:44:13 2020 +0000

       Added waves to archival

   commit a8f4200d04d7c49a1ff1cd443f1f36fd949cb5db
   Merge: 9321bdc9 8997f2a2
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 28 13:58:28 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit 9321bdc9a5a85a4b458b3539bb4f15bdcbf2cf33
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 28 13:39:34 2020 +0000

       Cleanup and added adjustments to other env files

   commit 67e20de5ac6e8f52312bc71adc5419330ebe6542
   Author: Henrique Alves <[email protected]>
   Date:   Thu Feb 27 04:22:36 2020 +0000

       Adding current smoothing flag to config.wave. Previous push alos contained changes to reflect improved wave model physics.

   commit 10164bdae0fdc53a604dc8e58b2a6a5fce5ebc99
   Author: Henrique Alves <[email protected]>
   Date:   Thu Feb 27 03:47:36 2020 +0000

       Adjustments to use gfs/gdas seaice file instead of omb file. Changes to intake rtofs 1hr files when available.

   commit 7145fd01ffcf3043dd1dea458ae866f208f32633
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 26 19:34:24 2020 +0000

       Modify prep.sh to create rtofs symlink in ROTDIR if DO_WAVE=YES

   commit 5ac8c8683b6f3de8cc586bae8d3825b2bd67011c
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 26 18:44:45 2020 +0000

       Fix for missing nth_postsnd in config.resources

   commit 011a393c162a422859b1184e9f32dd50d1d48882
   Merge: d01c3543 8806c9e4
   Author: Kate.Friedman <[email protected]>
   Date:   Wed Feb 26 13:50:49 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit d01c3543e59bbabb491454788f17e818305de6fc
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 26 13:48:26 2020 +0000

       Updates to checkout.sh from feature/gfsv16b

   commit 3b5d451aa165dc368c674cd2a71d6786097869e7
   Merge: 88d8abda 318d8b46
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 26 13:43:52 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit 88d8abda4adf3c945b1c5526dfca6b1774b91f3b
   Merge: 33c65a19 9d6e8464
   Author: kate.friedman <[email protected]>
   Date:   Tue Feb 25 17:49:29 2020 +0000

       Sync merge with feature/gfsv16b

   commit 33c65a19cbe68342cd9ab3f434a22a399be3a1b4
   Merge: 9a1f79d7 0aa8dacf
   Author: Henrique Alves <[email protected]>
   Date:   Mon Feb 24 15:37:48 2020 +0000

       Bugfix for creating spectra files in wavepostsbs step

   commit 0aa8dacfeef3fd1bf3abe368c9cdaf9a16b57cde
   Merge: 8148766c 431c7866
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 21 13:57:55 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit 8148766c489057553e20fc42bad494f1ed5aa70c
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 21 13:56:56 2020 +0000

       Small fix to exglobal_fcst_nemsfv3gfs.sh

   commit ebf02b19f98f90ae3c8bc57cc5c2325260aaab0a
   Author: kate.friedman <[email protected]>
   Date:   Thu Feb 20 14:05:52 2020 +0000

       Remove output_1st_tstep_rst override and add iau_drymassfixer

   commit 36cb42dc5d8985f8402405dce811f04063f572ab
   Author: Henrique Alves <[email protected]>
   Date:   Thu Feb 20 12:30:28 2020 +0000

       Removing references to gens/gefs from exglobal_fcst_fcst_nemsfv3gfs.sh in preparation for merge back to gfsv16b

   commit 9a1f79d7aa0343ea95d1af419f55a2d0d356e99d
   Author: Henrique Alves <[email protected]>
   Date:   Thu Feb 20 12:19:11 2020 +0000

       Adding back lost and found EOF in section that creates input.nml

   commit 635d95d58c932909dc6a29c62515c385dc01587a
   Merge: f31de5aa c4454b3a
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 19 20:42:49 2020 +0000

       Additional sync merge with feature/gfsv16b today

   commit f31de5aaa6c915ac8bc1184726bead71dc9157d4
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 19 20:18:23 2020 +0000

       Removing copies of exglobal_fcst that were added erroneously

   commit 31bb7d32181ca84229c3c3374226bbd37784ddc4
   Merge: eb73e520 0359d342
   Author: Mallory Row <[email protected]>
   Date:   Wed Feb 19 15:24:42 2020 +0000

       Merge branch 'develop' into feature/metplus

   commit e058a9054d7edb2b92ee590b6dede733fe4bc4a3
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 19 15:05:59 2020 +0000

       Changes to config.resources after wave tests

   commit 24844e403745fb5b292fcde0aae53a3c497aa295
   Merge: 0f2f2b0b c2e99795
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 19 14:03:58 2020 +0000

       Sync merge with feature/gfsv16b

   commit 0f2f2b0be1ff97485a23cdaf214d428927290c3d
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 19 13:36:14 2020 +0000

       Updates to config.wave and scripts/exwave_post_sbs.sh

   commit 958ee38b6fb9c76056a3045f43dec92a503f48c9
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 14 20:38:53 2020 +0000

       Increasing resources for eupd when C384

   commit f662fffa25a99617828e4322bf789978cf523248
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 14 15:57:05 2020 +0000

       Issue #3 - Updated README with new manic tag v1.1.7

   commit 94cd971fb14c4b7204822ca780d6e9dbe945b595
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 14 15:31:32 2020 +0000

       Updates to wave scripts

   commit e3196a84a0ecd2b54d59abfdc9184622a9c605ca
   Author: Kate Friedman <[email protected]>
   Date:   Thu Feb 13 15:59:06 2020 -0500

       Update README.md

   commit e46b175d8a309010e421ccd54e6d6eb083af3579
   Merge: 4bd0e203 0359d342
   Author: Kate.Friedman <[email protected]>
   Date:   Thu Feb 13 20:38:04 2020 +0000

       Issue #3 - sync merge with develop branch

   commit aec4c288e1f96ee7f3f2a834014edde0ef4ea9a2
   Author: Kate.Friedman <[email protected]>
   Date:   Thu Feb 13 19:09:56 2020 +0000

       Added EUPD_CYC variable to config.base.emc.dyn

   commit 2a2a8d3fe1fcd0bebf07d34c32697f64f5ac745c
   Author: Kate.Friedman <[email protected]>
   Date:   Wed Feb 12 18:00:14 2020 +0000

       Adjusting config.resources for C384

   commit 8bdf2387b1fad22cfa2da37a7428406a847d2362
   Author: Kate.Friedman <[email protected]>
   Date:   Wed Feb 12 17:33:53 2020 +0000

       Reducing npe_eobs from 400 to 100

   commit c48ac6df8c5c166a1ef51b173372f3f26f9d877a
   Author: Kate.Friedman <[email protected]>
   Date:   Wed Feb 12 14:46:26 2020 +0000

       Removing gefs from checkout.sh and link_fv3gfs.sh

   commit 78a7294eb1937758fa81f72cc5045d3d680a07c6
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 19:29:15 2020 +0000

       Fixed missing fi in checkout.sh

   commit 15628bda0621187949204d0d9af4d901e205495d
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 19:21:39 2020 +0000

       Change fv3gfs checkout to develop branch of ufs-weather-model

   commit 631820beca07522faedccc47d7415c4b6b250273
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 19:08:30 2020 +0000

       Changing checkout.sh to Henrique's fork branch gfsv16_wave

   commit a518485866536102312c477926ae42a59d5e561e
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 17:02:22 2020 +0000

       Changing fv3gfs.fd checkout back to gfsv16_updates

   commit c75d35b6802592b17640fecace38d9103a14b1bc
   Merge: 2a46ee2e ba63c4f8
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 16:44:53 2020 +0000

       Sync merge with feature/gfsv16b

   commit 2a46ee2ee71da5c75d11cbc96b048a1e34148239
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 15:42:35 2020 +0000

       Updates for wave and fcst scripts, as well as config.wave

   commit eb73e520716215c3f11cc4cdfce3831408221766
   Author: Mallory Row <[email protected]>
   Date:   Fri Feb 7 14:04:37 2020 +0000

       Update EMC_verif-global checkout to verif_global_v1.5.0

   commit 85deaf78b86184f9b52afe5d68b370ba640c152b
   Author: kate.friedman <[email protected]>
   Date:   Thu Feb 6 19:16:18 2020 +0000

       Updated resource configs based on C384 and C768 tests

   commit 4bd0e20300cc2a79e79433b2ec8cdb15c8f01c9e
   Author: Kate Friedman <[email protected]>
   Date:   Thu Feb 6 11:55:31 2020 -0500

       Update README.md

   commit d9ea1acab54f65a987b32d56587dfd1b6bcd037c
   Author: Kate.Friedman <[email protected]>
   Date:   Thu Feb 6 16:03:11 2020 +0000

       Issue #3 - reduce hashes down to minimum 8 characters

   commit 17bcdf2a1e0e8f1febfc6d57994a12ac625d9d75
   Author: kate.friedman <[email protected]>
   Date:   Tue Feb 4 19:11:42 2020 +0000

       Wave changes for running with IAU on

   commit 50b70215096dbc87e0484ed0eea9572238c37432
   Author: kate.friedman <[email protected]>
   Date:   Thu Jan 30 14:55:48 2020 +0000

       Resource adjustments and fix for restart copying in exglobal

   commit 85b254d8e65318adaeef87ae7187218de59f94c5
   Author: Henrique Alves <[email protected]>
   Date:   Tue Jan 28 21:18:35 2020 +0000

       Adjusting resources for wave component

   commit 3f858be34da7134a071762376f4c4e69ea73f4a0
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 20:43:02 2020 +0000

       Further adjustment to config.efcs for restart_interval for cold start SDATE

   commit a674d30c8fe1da53c2d8bda5b695a474e8906f6b
   Merge: 9944f2fe 3fda3e35
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 20:26:10 2020 +0000

       Merge branch 'feature/wave2global' of https://github.com/NOAA-EMC/global-workflow into feature/wave2global

   commit 9944f2fe15576f0b401996fefe3c910888708e0d
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 20:25:59 2020 +0000

       Resource adjustments for C384, restart_interval adjustment for cold start, and fcst dependency update

   commit b64fd5ff43f88bd5f2d27b0a16fb803eac8aff8c
   Merge: cf008631 3ed9267b
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 15:24:37 2020 +0000

       Merge branch 'develop' into feature/manage_externals

   commit cf0086311daaf62ee33df010946d0a0ddc5bc400
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 15:23:14 2020 +0000

       Issue #3 - remove copy of manage_externals under util and add README.md file

   commit 3fda3e359f66611c77a97ca9c30a6204a36077c3
   Author: Henrique Alves <[email protected]>
   Date:   Tue Jan 28 14:18:47 2020 +0000

       Adjusting output stride on station outputs, adding bulletin output to wavepostsbs using unified wave_outp_spec.sh (removing wave_outp_bull.sh), adjusting wave resources in config.fv3

   commit e4bd7d09ef3cc06d14dbfcb07bd3f211d4a5e54c
   Merge: 99b19f18 b3d88593
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 13:58:16 2020 +0000

       Sync merge with feature/gfsv16b

   commit 99b19f18e0a01fcf49b442ec66f1aea43b16433c
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 13:54:46 2020 +0000

       Disabling additional wave jobs for later implementation

   commit bfc7bb0b237d4cf4240551aa8b9c5d025724ac16
   Author: Kate.Friedman <[email protected]>
   Date:   Mon Jan 27 19:06:17 2020 +0000

       Issue #3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds.

   commit e216205aec6f481b4e96c8707d485dd2eacfb0e7
   Author: Henrique Alves <[email protected]>
   Date:   Mon Jan 27 00:01:14 2020 +0000

       Updating resource config in config.fv3 for running cplwav in c384 with ppn=7,thrd=4; checkout.sh now points to the latest ufs-weather-model develop branch; updated fv3gfs_build.cfg to match ufs-weather-model

   commit 786806f3cd5d858615f3f74dec78891a2189ee79
   Author: Mallory Row <[email protected]>
   Date:   Fri Jan 24 15:04:16 2020 +0000

       Missed file format updates in a few places in config.metp

   commit c11dfef0f7fb8da2866e6a022ac0ff60044766a7
   Author: Mallory Row <[email protected]>
   Date:   Fri Jan 24 14:07:29 2020 +0000

       Update EMC_verif-global tag to verif_global_v1.4.1

   commit df2e6b0bd9a2af2107a78c12f9c648a61fe0d5b9
   Merge: bc07de02 09e68b48
   Author: kate.friedman <[email protected]>
   Date:   Thu Jan 23 20:00:34 2020 +0000

       Sync merge with feature/gfsv16b

   commit bc07de02af5743194cb9203d0d36e62e9a25b223
   Author: kate.friedman <[email protected]>
   Date:   Thu Jan 23 19:43:12 2020 +0000

       Fixed wavepostsbs dependencies

   commit 4b54c37b425c947e79c4ddc192a6e2f06b8528fa
   Author: kate.friedman <[email protected]>
   Date:   Thu Jan 23 15:04:20 2020 +0000

       Turn off cplwav in efcs config and adjusted dependencies for fcst job

   commit 0ea809c208ce606c957eed4d346a3828d8186010
   Author: Mallory Row <[email protected]>
   Date:   Thu Jan 23 13:29:56 2020 +0000

       Update file format variable in config.metp of online archive files

   commit b886c848a60871a86bb0b45d024a34368ad1d898
   Author: kate.friedman <[email protected]>
   Date:   Wed Jan 22 21:01:34 2020 +0000

       Change to base config and update to wave dependencies

   commit 154b118a7808bfa60abe0620e4bee21cb4faabee
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 22 03:37:24 2020 +0000

       Changing WAV_MOD_ID to MDC (model component) tag; updating some paths for wave components in several scripts. Correcting wave_tar bug.

   commit 0edcb211586f1f96d01f172215568fa7eee3a7a2
   Author: Henrique Alves <[email protected]>
   Date:   Tue Jan 21 20:15:14 2020 +0000

       Several changes to change the sirectory name from  to  etc. Updates to wavepostsbs.

   commit c0d7179f34837e40db9ccb1b941ad9f312283a6e
   Author: Mallory Row <[email protected]>
   Date:   Tue Jan 21 16:37:16 2020 +0000

       Add updated env machine files for gfsmetp

   commit 82e690717d72c7b021c637270108f4bacfb6816d
   Author: Mallory Row <[email protected]>
   Date:   Tue Jan 21 16:29:23 2020 +0000

       Update config.resources for gfsmetp

   commit 72e8adf1c8a8859786cbbcf1b976640d73c5c867
   Author: Mallory Row <[email protected]>
   Date:   Tue Jan 21 16:19:31 2020 +0000

       Update EMC_verif-global tag checkout to 1.4.0

   commit 6872f79f3f9052377ff863da1bbac482548ee0ce
   Author: Mallory Row <[email protected]>
   Date:   Tue Jan 21 16:14:25 2020 +0000

       Add rocoto METplus job script

   commit 9c94156670bd810561bd2a699648afb946511ea9
   Author: Mallory Row <[email protected]>
   Date:   Tue Jan 21 16:09:13 2020 +0000

       Changes to setup_workflow.py for gfsmetp metatask

   commit 0ad851882686087fdd21a4a8f88b65dd3960cd1c
   Author: kate.friedman <[email protected]>
   Date:   Fri Jan 17 17:29:09 2020 +0000

       ACCOUNT fix in config.base.emc.dyn and dependency fix to setup_workflow.py

   commit 80f13fb4b785fbde8e925cfb6deb547297f34e70
   Author: Henrique Alves <[email protected]>
   Date:   Fri Jan 17 03:29:35 2020 +0000

       Removing underscore from COM wave directory names

   commit 39a9df9385631df4a3cba4e6663fc6ab5c3f238d
   Author: Henrique Alves <[email protected]>
   Date:   Fri Jan 17 03:08:41 2020 +0000

       Changing back waveprep to include ice and currents by default

   commit c36df4d748bbc2a8dc7b4a044a1f62f637e3ba33
   Author: Henrique Alves <[email protected]>
   Date:   Thu Jan 16 19:43:26 2020 +0000

       Updating post sbs script to copy station files to correct directory.

   commit f1cd7ab43d24fc576c82ea227cd7d79cc08f4835
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 20:48:11 2020 +0000

       Adding block sourcing config files into wave j-jobs

   commit b736f8315497bfc29fd77faa9d98bf558ddea919
   Author: kate.friedman <[email protected]>
   Date:   Wed Jan 15 20:40:16 2020 +0000

       Removed config sourcing from rocoto job scripts

   commit 4f6840b25d85152ea7393a8959619bb4caab9d67
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 20:38:41 2020 +0000

       Removing dependency on log file for wave post sbs

   commit 429c409799f1999babbfb3653e6f03be66f8fec3
   Merge: 3f685fd3 a6905174
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 20:35:24 2020 +0000

       Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global

   commit 3f685fd3423add0ba2cfb7c3115a674891c44e55
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 20:29:58 2020 +0000

       Reinstating Ratkos NO NO in build_fv3.sh

   commit a69051742c5edd0e4d34d178329fc24cacede78a
   Author: kate.friedman <[email protected]>
   Date:   Wed Jan 15 20:12:20 2020 +0000

       Adding supplemental config source to JGLOBAL_FORECAST for wave

   commit 1f5c593705df384608b1f1dd84df9114d5d8a812
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 19:59:27 2020 +0000

       Removing KEEPDATA from JWAVE_POST_SBS

   commit baa06afcecef64faad51bfac3b4fd2c064df3fb5
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 19:32:06 2020 +0000

       Changes to update sbs post and reconciling parameters for output post data.

   commit 1915aa921dfe2ef17799599e5a3084547caa3ca2
   Author: kate.friedman <[email protected]>
   Date:   Fri Jan 10 18:36:32 2020 +0000

       Issue #8 - pulled in config.metp and modifications to two setup scripts

   commit 784fb65dee27135340771b1c778d1d69219ba05c
   Merge: 9562fc71 7440aad1
   Author: Henrique Alves <[email protected]>
   Date:   Fri Dec 27 05:01:12 2019 +0000

       Merging latest feature/gfsv16b branch into wave2global

   commit 9562fc71eb80e33f4d132dd9ad9ca5903be1435f
   Author: Henrique Alves <[email protected]>
   Date:   Fri Dec 27 04:47:20 2019 +0000

       Adjusting resources and env for running C384 coupled

   commit 5ce0bdf026c4c9a4a62252a264816710558dfd20
   Author: Henrique Alves <[email protected]>
   Date:   Thu Dec 26 19:00:42 2019 +0000

       Changes to support wave side by side post

   commit 07d9ec5aa1e54e9b78ee1e18b0fa0d984f129bea
   Author: Henrique Alves <[email protected]>
   Date:   Sun Dec 22 17:55:13 2019 +0000

       Temporary changes to work with updated WW3 code under GEFS_v12 and to bugfix wave_post_sbs.

   commit a69df4b414f5247a9db24ddebb42bc409f26d090
   Author: Henrique Alves <[email protected]>
   Date:   Fri Dec 20 12:58:02 2019 +0000

       Additional changes to have wave init, prep, postsbs handed over for experiments by gfsv16 group

   commit 46aa4bae69f1a9a73965b863557cd359161ff7d6
   Author: Henrique Alves <[email protected]>
   Date:   Tue Dec 17 21:02:05 2019 +0000

       Adding resource adjustments to allow fcst step to run the couple FV3-WW3 system. Adding the WAV_POST_SBS job, modifying waveprep to use new unified point output grid tag uoutpGRD

   commit b8cff19a2cea88b1f73e0828f9c47b6b85f20ceb
   Author: Henrique Alves <[email protected]>
   Date:   Mon Dec 16 06:13:26 2019 +0000

       Fixing issues with waveinit and waveprep and attempting to run gdasfcst.

   commit bcfcd23cc11644dc138b1d4aa19ad22a3c3de53c
   Author: kate.friedman <[email protected]>
   Date:   Fri Dec 13 20:31:18 2019 +0000

       Added additional wave jobs to setup scripts

   commit 290bc09e17bb41ce94f4a98c7e942a0e67757093
   Author: kate.friedman <[email protected]>
   Date:   Fri Dec 13 19:04:38 2019 +0000

       Adding files for additional wave jobs

   commit 23ea303716477284c74b187d4142f40c4f4a2e1b
   Author: Henrique Alves <[email protected]>
   Date:   Thu Dec 12 05:19:27 2019 +0000

       Updating build_fv3.sh to add correctly ww3 compile options

   commit 212aeb449300a0795d8d0055ab6f12f39bfc4d98
   Author: Henrique Alves <[email protected]>
   Date:   Thu Dec 12 02:58:50 2019 +0000

       Adding WW3 as component in the gfsv16 for enabling coupled run.

   commit 6e450a8947967795a9fab9da2b5ebc4d415c0387
   Author: Henrique Alves <[email protected]>
   Date:   Thu Dec 12 02:51:08 2019 +0000

       Changes to make wave init functional end-to-end under GFSv16 workflow. Removing parm/wave directory (to be moved to GEFS repo, in GFSv16 parm were converted to config)

   commit c4b7e07b355b9e92a8070659210cfd95961a1b05
   Author: kate.friedman <[email protected]>
   Date:   Wed Dec 11 15:01:28 2019 +0000

       Added wave tasks to free-forecast mode and adjusted cycled mode dependencies

   commit e36fed5ffaed435a2d774fa859b0aebd62de149b
   Author: Henrique Alves <[email protected]>
   Date:   Wed Dec 11 13:27:52 2019 +0000

       Modifying spec of unified output point parameter from buoy to uoutpGRD to avoid errors as parameter buoy is also used to label output points themselves

   commit 126bd34442e34862da1ac1eaf00a2d9903cdd595
   Author: Henrique Alves <[email protected]>
   Date:   Tue Dec 10 18:44:27 2019 +0000

       Partial changes to add side-by-side post

   commit 66add7f33225e5bef12c941fd27b9c0539b155df
   Author: kate.friedman <[email protected]>
   Date:   Tue Dec 10 17:18:00 2019 +0000

       Added wave rocoto job scripts, configs, and setup criteria

   commit b6a2742ebdce9e522a9b6f5af77d3f8a379c8413
   Author: Henrique Alves <[email protected]>
   Date:   Mon Dec 9 16:36:20 2019 +0000

       Adding changes to ensure RTOFS current files are read and prepared for coupled GFS runs. Several changes to add side-by-side post.

   commit 9d447f9363e999d5a7f5ff337c68a225a137bad9
   Author: Henrique Alves <[email protected]>
   Date:   Fri Dec 6 20:48:56 2019 +0000

       Reconciling exglobal_fcst, checkout and link scripts to allow running both GFS and GEFS configs. Adding ability to link out_grd/pnt wave files to COMOUTWW3

   commit db1d3be780e8bcee8ac1352d5d8fe4b604d330f9
   Merge: 25e423bd 37a3bd27
   Author: Henrique Alves <[email protected]>
   Date:   Fri Dec 6 15:51:10 2019 +0000

       Merging feature/gfsv16b 37a3bd27 into feature/wave2global

   commit 25e423bd5c804c73b2f9ba12ed3c29d4d2e13abd
   Author: Henrique Alves <[email protected]>
   Date:   Thu Dec 5 19:50:43 2019 +0000

       Cleaning up (changing wavemodTAG to WAV_MOD_TAG etc)

   commit eb2197553c83c8c2c7b8233781fa8caac2bf7fe7
   Author: Henrique Alves <[email protected]>
   Date:   Thu Dec 5 05:58:01 2019 +0000

       Adjustments to adding stats step

   commit ed084df89006436392777bdce7502b426c505a8c
   Author: Henrique Alves <[email protected]>
   Date:   Mon Dec 2 16:05:53 2019 +0000

       Changes made to file names to adjust to wave scripts ported to global-workflow

   commit 49d7b118c6ee980ad2c3e1e5d8e960926fe5cc1f
   Author: Henrique Alves <[email protected]>
   Date:   Wed Nov 27 17:09:34 2019 +0000

       Saving changes to add gwes POST to global-workflow

   commit f70a299d03e1c5c902a5b6c65514a2509e72ea82
   Author: Henrique Alves <[email protected]>
   Date:   Thu Nov 21 02:29:45 2019 +0000

       Modified wave PREP step config files for accommodating move of wave j-jobs, ex/ush scripts, fix_wave and parm files into the global-workflow structure. Changed COMICE to COMINice in wave scripts. Renamed ush scripts for direct lreationship to WW3 package program names (eg ww3_prnc)

   commit 248fd28a4603d23b1ff1ee353e0c521ea36041d5
   Author: Henrique Alves <[email protected]>
   Date:   Tue Nov 19 22:46:04 2019 +0000

       Adding changes that make INIT step functional for GEFS after merging wave j-jobs, ex/ush-scripts, parm, fix into global-workflow

   commit 79c318ddd22a52f9340808c9d9768b866dc39880
   Author: Henrique Alves <[email protected]>
   Date:   Fri Nov 8 17:53:47 2019 +0000

       Finalizing changes to retain history relative to GEFS/scripts source for exwave scripts

   commit 4388122b7ca0e32caec0e44435c2ec4434decf4d
   Author: Henrique Alves <[email protected]>
   Date:   Fri Nov 8 17:50:52 2019 +0000

       Staging intermediate name change to retain history in exwave scripts relative to source GEFS/scripts

   commit f4c5e2c214145d165c8de73a0326c7d30285c3ac
   Author: Henrique Alves <[email protected]>
   Date:   Fri Nov 8 17:48:08 2019 +0000

       Staging removal of obsolete files

   commit 6b8321b25ac9291552addec1bb5a4b2eec5eff9c
   Author: Henrique Alves <[email protected]>
   Date:   Fri Nov 8 15:10:24 2019 +0000

        Removing extensions gefs/gens (all will be set at the appropriate j-job, links will be made to fix_wave.), making error reporting codes consistent acrros ex-scripts.

   commit 1800288101815c3adf17ee071d3d04ab525e154b
   Author: Henrique Alves <[email protected]>
   Date:   Fri Nov 8 13:48:18 2019 +0000

       Renaming after generalization of calls to ex-scripts from GEFS workflow

   commit 7bae5b660bbb12efbd7200180d5435106ecc0e85
   Author: Henrique Alves <[email protected]>
   Date:   Fri Nov 8 13:30:06 2019 +0000

       Changing extension to gens matchin NCO  parameter, which is set to gens for all gefs-related runs.

   commit 4bd4562e77da8552ceeac317c945570afc389ddc
   Author: Henrique Alves <[email protected]>
   Date:   Thu Nov 7 21:48:25 2019 +0000

       Adding wave components to global-workflow (fix/wave, jobs, parm/wave, scripts/exwave* ush/wave_*). Massive changes still required for this to work. Paths need to be re-routed, script names need to be adjusted, hard-wired ush-script parameters need to be moved into parm/wave.

   commit fb95cd3c304b623bf95e2618b71b2e649751f685
   Author: Walter Kolczynski <[email protected]>
   Date:   Tue Nov 5 05:34:56 2019 +0000

       Change way wave restart files are produced

       In order to facilitate faster cycle turnover, instead of copying
       the wave restart files at the end of the forecast, symbolic links
       to the final destination are created before the forecast. This
       allows the restart directory to be populated immediately, so that
       the next cycle can commence while the current cycle finishes.

       Change-Id: I887dddec88e32ad08fefc5a8080c9f553965b9dc

   commit 750ba243dc1040eb008bda9eddeecc313de5ad28
   Author: Walter Kolczynski <[email protected]>
   Date:   Sun Nov 3 08:07:06 2019 +0000

       Update NEMS app for new WW3 version

       An undocumented change to how the peak frequencies were computed in
       WW3 resulted in unrealistically large peak frequencies. Coupled with
       a bug in Jasper, this caused crashes during grib2 encoding.

       Change-Id: Iface172ec8f6da816a4b56af73e8fb091dd57584

   commit c2696f6951c8e0dca1b853009a88cef6846a02bf
   Author: Walter Kolczynski <[email protected]>
   Date:   Fri Nov 1 10:02:45 2019 +0000

       Update NEMS app to incorporate latest WW3 changes

       The NEMS app is updated to incorporate changes to WW3 for the grib2
       encoders and make profiling optional to improve performance.

       Change-Id: I6b7c96128f116698c27f037129db4ba8f591551b

   commit 632bfe92a6912e981b98f84d9782adcd5650d9f9
   Author: Walter.Kolczynski <[email protected]>
   Date:   Fri Oct 25 16:56:16 2019 +0000

       Fix previous merge enabling Hera

       Change-Id: I277baff3dd5c8f7485d4be1c8052837c3fbadc46

   commit 78924915ed4add9511c6b283119015f048201baf
   Author: Walter.Kolczynski <[email protected]>
   Date:   Fri Oct 25 13:47:42 2019 +0000

       Add capability to run on Hera

       Change-Id: I61da1adcfa1b0ff09222c15b2c4e58c6af8a853b

   commit e748ef122e196028816da5aa3a05f0179cabddc9
   Author: Walter Kolczynski <[email protected]>
   Date:   Sun Oct 20 08:06:20 2019 +0000

       Update NEMS app to version for GEFS retrospective

       The NEMS app is updated to check out the version for phase 2 of the
       GEFS v12 retrospective.

       Change-Id: Iddfa75a78965cf19eca2bca7f9fbbf45dcd457a6

   commit b7dc7e6124dbde4b0c41cfaca6a457e5bc995066
   Author: Walter Kolczynski <[email protected]>
   Date:   Sat Oct 12 18:29:16 2019 +0000

       Update app for WW3 OMP fix

       Change-Id: I41523cb5313b18eba4301d599f99ec67ea6c9bc4
       Refs: #58418

   commit 59883cb4ff503fd7a92e371389a5ed4f467da5e2
   Author: Walter Kolczynski <[email protected]>
   Date:   Thu Oct 10 01:51:06 2019 +0000

       Fix bug with creating WW3 restart directory

       Change-Id: I7002db6175d4e994318e6274071dca1475ae3121
       Refs: #58418

   commit 519a99c671db60eb8d994190fa75102c8a4b01e4
   Author: Walter Kolczynski <[email protected]>
   Date:   Wed Oct 9 19:10:26 2019 +0000

       Update NEMS app version for Hera port

       Change-Id: I19cdf40e4c0a147d138cc59fc720b7608b51554a
       Refs: #58418

   commit a9309088cee6591eda24318af55f8566c79285a5
   Author: Walter Kolczynski <[email protected]>
   Date:   Mon Oct 7 20:18:14 2019 +0000

       Update post to more recent version

       Change-Id: I8aab5d3d532fbfc444abd4c1c71e10f55906500c
       Refs: #58418

   commit 735f421618849dbda49a1c30ccaabd490e333544
   Merge: 865ea5aa c68728b5
   Author: Walter Kolczynski <[email protected]>
   Date:   Thu Oct 3 17:05:25 2019 +0000

       Merge branch 'develop' into lgan_fv3_ww3

   commit 865ea5aa37fc866b83dc09fb10f6b1021dc09eee
   Author: Walter Kolczynski <[email protected]>
   Date:   Thu Oct 3 16:54:24 2019 +0000

       Update NEMS app checkout to ver with GSDCHEM 0.8.8

       Change-Id: Idd286ae4300f0b067d3f38a2aa76b27f2d3911df
       Refs: #58418, #62104

   commit ad1b52817e367f2dd09f961618af72ba3cd84939
   Author: Walter Kolczynski <[email protected]>
   Date:   Tue Oct 1 20:19:19 2019 +0000

       Fix issue with exglobal not creating wave restart directory

       The wave restart directory was not being created by exglobal, causing
       the copying of wave restart files to fail. Modified the directory
       creation to use the new restart subdirectory.

       Change-Id: I77fe3a72249efd3e688ece47f0778b30e034ff24
       Refs: #58418

   commit 8a312b398ea79bacef025d19252ef0fd98cffa82
   Author: Henrique Alves <[email protected]>
   Date:   Wed Sep 25 02:26:51 2019 +0000

       global-workflow wave component: adding rundata and restart directories to store model run files (binary ww3, log, forcing inputs etc) and restart following new directory tree structure.

   commit 67adca4ac31d1219c173d3af0c7a905f4e7d3382
   Author: Henrique Alves <[email protected]>
   Date:   Wed Sep 18 02:47:03 2019 +0000

       Winding back changes to wave-related parms PDY_PCYC etc, and adding correct parm cyc defining directory, that was erroneously pointing to non-existent parm cycm1.

   commit 65fe319c30dfceff7ef265c3f5aa6eb2a1ce049e
   Author: Henrique Alves <[email protected]>
   Date:   Tue Sep 17 21:44:59 2019 +0000

       Adding parms CDATE_PCYC, PDY_PCYC and cyc_pcyc to exglobal_fcst_nemsfv3gfs.sh for setting location of wave component restart file as a function of time between cycles

   commit af747496f8b4b2de287d061a5094135083410803
   Author: Walter Kolczynski <[email protected]>
   Date:   Thu Sep 5 18:59:49 2019 +0000

       Update NEMS app version to a master commit

       Previously the checkout for the FV3-GSDCHEM-WW3 app temporarily pointed to an
       interim commit that included GSDCHEM 0.87 and used ESMF 8.0.0bs40+ to facilitate
       development while waiting for the app to merge a full update to master. That
       update has now been made to the app master, so the checkout commit is now updated
       to point to that new version.

       The new FV3-GSDCHEM-WW3 app commit updates to GSDCHEM 0.87 and ESMF 8.0.0bs47,
       and also updates the other components to recent development versions.

       Change-Id: I0318535aa7564b48567a6442cdda074007095c03
       Refs: #58418

   commit 57f74c842ba30e40f6e2c3ba1bd4802388aa068f
   Author: Walter Kolczynski <[email protected]>
   Date:   Fri Aug 23 16:34:57 2019 +0000

       Update UFS_utils version to work with GEFS

       The GEFS init system requires changes to global_chgres_driver.sh that
       are not present in v1.0.0. The UFS_utils version is updated to the
       current tip of the develop branch, which includes the necessary changes.

       Change-Id: I097b16342ca081e867786410a6ac9916fd5576fb
       Refs: #58418

   commit 6fddfaf8212d29ee9a1eddbdbc7f710d2a19e426
   Merge: 9fd2726d 9dc4c7a1
   Author: Walter.Kolczynski <[email protected]>
   Date:   Mon Aug 12 18:55:36 2019 +0000

       Merge branch 'develop' into lgan_fv3_ww3

       Change-Id: I068787c69f6610fa6896af16775378286d3e948b

   commit 9fd2726d64d62b7fc6196fb74060dc2ec15b3dab
   Author: Walter.Kolczynski <[email protected]>
   Date:   Mon Aug 5 18:24:21 2019 +0000

       Update FV3-GSDCHEM-WW3 version

       Updated the checkout script to fetch a newer commit of the
       FV3-GSDCHEM-WW3 app. This newer version uses ESMF v8.0.0bs42, updates
       GSDCHEM to 0.87, WW3 to an OMP-enabled version, and FV3 to the latest
       develop commit.

       Change-Id: I7c16511e2d5d183abd96371afd0d0b237e5349aa
       Refs: #58418, #62104

   commit f123abb87a153876a1cdcff5285d7c4dd5d66567
   Merge: f4b47b5d dcfa5eee
   Author: Walter.Kolczynski <[email protected]>
   Date:   Wed Jul 31 18:31:17 2019 +0000

       Merge remote-tracking branch 'origin/develop' into lgan_fv3_ww3

   commit f4b47b5db243f4f0d172b3430e8a6f494946ca2a
   Author: Henrique Alves <[email protected]>
   Date:   Thu Jul 18 21:49:50 2019 +0000

       Cleaning up esmf profiling parms

   commit 056c6cd12288a6a8f3b1fd0fa6165f0b14667a71
   Merge: 2bb5bacc 01b12587
   Author: Henrique Alves <[email protected]>
   Date:   Thu Jul 18 21:45:33 2019 +0000

       Merge branch 'lgan_fv3_ww3' of gerrit:global-workflow into lgan_fv3_ww3

   commit 2bb5bacc59c830276c91c03ab490cfbc4781844e
   Author: Henrique Alves <[email protected]>
   Date:   Thu Jul 18 21:45:23 2019 +0000

       Branch lgan_fv3_ww3: changing exglobal_fcst to allow writing wave component restart files following number of daily cycles (gfs_cyc), and creating proper comout for wave restart files

   commit 01b12587ae6567677d95e15e990397f142c53633
   Author: Walter.Kolczynski <[email protected]>
   Date:   Tue Jul 16 17:49:44 2019 +0000

       Fix clean arguments for building fv3

       The arguments used when building the FV3-GSDCHEM-WW3 app used named
       arguments, but the script expects arguments without names.

       Change-Id: Ibc98a4c883f4f28c361104d03e4b17fb070dc7f8
       Refs: #58418

   commit 7135cc11b621165edc1fd7677af053e915ceb364
   Author: Henrique Alves <[email protected]>
   Date:   Mon Jul 8 17:03:55 2019 +0000

       Small bugfix on copying out_pnt for wave output

   commit 65c3720495cc39ddd64c21b4c4e0080fccd877b0
   Author: Henrique Alves <[email protected]>
   Date:   Mon Jul 8 15:07:19 2019 +0000

       Changes made to exglobal_fcst to streamline linking and copying IO from/to wave model component.

   commit 02704a3f0312383919adda7245300a5a60b0ecd8
   Author: Walter.Kolczynski <[email protected]>
   Date:   Fri Jun 28 16:21:46 2019 +0000

       Remove CDUMP requirement to use wave coupling

       Previously, the needed operations for wave coupling were only completed
       if CDUMP="gfs", even if cplwav=".true.". The GEFS uses a CDUMP="gdas",
       so this requirement had to be removed for the GEFS to operate correctly.

       Change-Id: I50964a7fc064f439b6c879fb199d910b3f7eadfc
       Refs: #58418

   commit a3033a05458b47548d404f82148423edda4946cd
   Merge: 6cfec865 6ca55564
   Author: Walter.Kolczynski <[email protected]>
   Date:   Thu Jun 27 19:38:01 2019 +0000

       Merge branch 'master' into lgan_fv3_ww3

       Change-Id: I31ee2e1a55de3db34de2dbcb029224729c3c9074

   commit 6cfec865ebb0bcad8f81ebea21bbe4d06531ac99
   Author: Walter.Kolczynski <[email protected]>
   Date:   Thu Jun 27 19:15:50 2019 +0000

       Update checkout script to get combined FV3-WW3-GSDCHEM app

       Replaces the FV3-only checkout with one that clones the combined
       FV3-WW3-GSDCHEM app, which can be run in any combination of those
       components. This unified app is required to run coupled forecasts.

       The app will build correctly in the normal way using build_fv3.sh (and
       build_all.sh).

       Post is also reverted to the mainline project rather than the gtg
       version which has more restricted access.

       NOTES ON APP VERSION:
       1) App does not build successfully on WCOSS-Cray due to a module
       dependency issue that will be sorted out later.
       2) As committed, the WW3 build requires a path of 79 characters or less.
       This will be addressed in a future NEMS commit. For now, you can fix
       this manually by updating L19 of
       fv3gfs.fd/NEMS/src/incmake/component_WW3.mk to a larger number before
       building.

       Change-Id: I6c6d000650dc4ee8b2bbc9997195c3dfa2690520
       Refs: #58418

   commit 9af1480dee2351b540e873f1daf9d26928ec472d
   Author: lin.gan <[email protected]>
   Date:   Thu May 2 17:55:16 2019 +0000

       Update resource to use dynamically calculated lowres on Theia include expdir

   commit ced016bb8b949350f92730bb52ca74cd3b8d9ad2
   Author: lin.gan <[email protected]>
   Date:   Thu May 2 17:50:27 2019 +0000

       Update resource to use dynamically calculated lowres on Theia

   commit 76f877c57b8f965779725a48059f6a1dc83290fa
   Author: lin.gan <[email protected]>
   Date:   Wed May 1 19:03:13 2019 +0000

       Coupled ww3 tested with FV3 GFS forecast certified

   commit 56c686d03a420bf7216aafb86a572a054fcecdc0
   Author: lin.gan <[email protected]>
   Date:   Wed May 1 14:06:18 2019 +0000

       Testing include ICE data

   commit c24de7af395edcf9cc9f341ee758d829d747b24f
   Author: lin.gan <[email protected]>
   Date:   Mon Apr 22 14:15:17 2019 +0000

       First try see email for record

   commit e789501ca90f72d7ef121cee8023bb340c0b3416
   Author: lin.gan <[email protected]>
   Date:   Mon Apr 22 14:12:40 2019 +0000

       First try see email for record

   commit ca2f9c56badd8f92bb97a25234ab55fb86cced68
   Author: fanglin.yang <[email protected]>
   Date:   Tue Apr 2 14:41:05 2019 +0000

       update gsi tag from fv3da.v1.0.42 to fv3da.v1.0.43 to remove a dead link in Ozomon

   commit dbad0c88855ff9fd06cf90a70d0ee112a065febf
   Author: fanglin.yang <[email protected]>
   Date:   Tue Apr 2 00:57:27 2019 +0000

       update POC for DA in release note

   commit f8f108f4a7030a3a3619fec52d6d6d8d961fab65
   Author: fanglin.yang <[email protected]>
   Date:   Tue Apr 2 00:46:18 2019 +0000

       merge NCO's back to q2fy19_nco branch.  Update release notes

   commit cbbb49fb1b60f7bdde5f1bb66be79c86233b3122
   Author: russ.treadon <[email protected]>
   Date:   Fri Mar 29 21:18:02 2019 +0000

       Update DA tag to fv3da.v1.0.42

   commit 23a45dea9fd33480ab250b37e4d75d10500726cb
   Author: fanglin.yang <[email protected]>
   Date:   Fri Mar 29 14:30:17 2019 +0000

       Update model tag to nemsfv3gfs_beta_v1.0.18 to
       1) correct a bug in precip units in the computation of frozen precipitation flag (srflag),
       2) write fields that are continuously accumulated in model integration in restart files
          so that after a restart their acummulated values can be read in. (FV3 Issue #61788)

   commit d9b5538244fee0876185fa90f0b40b1869dc2619
   Author: fanglin.yang <[email protected]>
   Date:   Thu Mar 28 20:46:52 2019 +0000

       update release note

   commit abff7d1d77b94b28aca48b996644df6e3fa4ccda
   Author: fanglin.yang <[email protected]>
   Date:   Thu Mar 28 20:45:36 2019 +0000

       replace current ecflow/def file swith NCO's copy

   commit 69c06ea44c639fd4716001edead49b5e2613a03d
   Author: fanglin.yang <[email protected]>
   Date:   Tue Mar 26 02:25:15 2019 +0000

       Squashed commit of the following from branch q2fy19_nco_rst

           Add restart capability of running GFS long forecast from the end or a failing point
           of last attempt.  modified:   jobs/JGLOBAL_FORECAST, parm/config/config.base.nco.static
           parm/config/config.fcst, and scripts/exglobal_fcst_nemsfv3gfs.sh.
           restart_interval_gfs is used to control the frequency of writing out restart ICs, which
           are saved under ROTDIR for emc parallels and NWGES for NCO production.  exglobal_fcst_nemsfv3gfs.sh
           script has been modified to autimatically detect if the model should execute as a cold,
           or warm start, or as rerun.   If it is a rerun, the script will look for saved ICs
           that is restart_interval_gfs hours back from the last ending point.

           use 8x24 instead of 12x16 layout in config.fv3 for C768 -- Matt Pyle indicated this will actually
           speed up a 16-day forecasts by about 2 minutes per his test

           update to model tag nemsfv3gfs_beta_v1.0.17 to address restart I/O issues #60879

   commit e01d1df6a81f7998574fa1145e05955f93ecf14d
   Author: russ.treadon <[email protected]>
   Date:   Mon Mar 25 23:16:05 2019 +0000

       Update DA tag to fv3da.v1.0.41 (Q3FY19 GDAS observation upgrade)

   commit 61b9da080d146fdc16c63aabdb4734ad5cbce8b9
   Author: fanglin.yang <[email protected]>
   Date:   Tue Mar 5 18:59:56 2019 +0000

       minor updates to resources usages in config.vrfy, config.resources and config.post on computers other an Dell to be consistent with the master repository
ajhenrique pushed a commit to RobertoPadilla-NOAA/global-workflow that referenced this issue Mar 30, 2020
@WalterKolczynski-NOAA
Merge pull request NOAA-EMC#3 from RobertoPadilla-NOAA/feature/gefs_w…
f74a39b 
…ave_statgem

Updating wave_stat step
jkhender added a commit to jkhender/global-workflow that referenced this issue Mar 31, 2020
@jkhender
merge 26Mar20 develop branch into gmtb_ccpp_hera
a847acc 
Squashed commit of the following:

commit 0e0dc87
Merge: b133700 95a6343
Author: Kate Friedman <[email protected]>
Date:   Thu Mar 26 10:54:44 2020 -0400

    Merge pull request NOAA-EMC#42 from NOAA-EMC/hotfix/viewer

    Issue NOAA-EMC#41 - Update PRODUTIL paths for WCOSS in viewer

commit 95a6343
Author: kate.friedman <[email protected]>
Date:   Thu Mar 26 14:43:44 2020 +0000

    Issue NOAA-EMC#41 - Update PRODUTIL paths for WCOSS in viewer

commit b133700
Author: kate.friedman <[email protected]>
Date:   Thu Mar 26 13:01:38 2020 +0000

    Issue NOAA-EMC#21 - correct syntax for machine if-blocks in setup_expt scripts

commit f4ee509
Author: kate.friedman <[email protected]>
Date:   Wed Mar 25 20:52:49 2020 +0000

    Issue NOAA-EMC#21 - remove unneeded logic from partition check

commit 4acc80f
Merge: accb6f4 fb1c79f
Author: Hang-Lei-NOAA <[email protected]>
Date:   Wed Mar 25 15:22:51 2020 -0400

    Merge pull request NOAA-EMC#40 from NOAA-EMC/port2wcoss3p5

    Issue NOAA-EMC#21 - Add support for WCOSS phase 3.5

commit fb1c79f
Author: kate.friedman <[email protected]>
Date:   Wed Mar 25 16:06:54 2020 +0000

    Issue NOAA-EMC#21 - updated WCOSS phase 3.5 queues

commit 08a5354
Author: kate.friedman <[email protected]>
Date:   Wed Mar 25 14:58:14 2020 +0000

    Issue NOAA-EMC#21 - add phase 3.5 support

    - add partition option to setup scripts
    - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts
    - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files

commit accb6f4
Merge: 057b2a8 8b51b56
Author: Kate Friedman <[email protected]>
Date:   Mon Mar 23 14:01:30 2020 -0400

    Merge pull request NOAA-EMC#39 from NOAA-EMC/feature/verif-tag

    Issue NOAA-EMC#38 - update EMC_verif-global pointer from VLab to GitHub

commit 8b51b56
Author: kate.friedman <[email protected]>
Date:   Mon Mar 23 17:40:18 2020 +0000

    Issue NOAA-EMC#38 - update EMC_verif-global pointer from VLab to GitHub

commit 057b2a8
Merge: 0377d20 622167d
Author: Kate Friedman <[email protected]>
Date:   Wed Mar 11 12:00:58 2020 -0400

    Merge pull request NOAA-EMC#29 from NOAA-EMC/feature/manage_externals

    Issue NOAA-EMC#3 - Introduce manage_externals as replacement for checkout.sh

commit 622167d
Author: kate.friedman <[email protected]>
Date:   Fri Mar 6 18:20:31 2020 +0000

    Issue NOAA-EMC#3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh

commit e83b90d
Author: kate.friedman <[email protected]>
Date:   Fri Mar 6 17:00:15 2020 +0000

    Issue NOAA-EMC#3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already

commit 8699b46
Author: kate.friedman <[email protected]>
Date:   Fri Mar 6 16:30:54 2020 +0000

    Issue NOAA-EMC#3 - updated README with new manic version

commit e602cd3
Author: kate.friedman <[email protected]>
Date:   Fri Mar 6 16:27:57 2020 +0000

    Issue NOAA-EMC#3 - updated link_fv3gfs.sh to adjust wafs links

commit 830c73f
Author: kate.friedman <[email protected]>
Date:   Fri Mar 6 15:21:45 2020 +0000

    Issue NOAA-EMC#3 - update EMC_verif-global tag in Externals.cfg after sync with develop

commit 40084e6
Merge: f662fff 0377d20
Author: kate.friedman <[email protected]>
Date:   Fri Mar 6 15:18:52 2020 +0000

    Issue NOAA-EMC#3 - Merge branch 'develop' into feature/manage_externals

commit 0377d20
Merge: 1b359db 2552467
Author: Kate Friedman <[email protected]>
Date:   Thu Mar 5 08:43:16 2020 -0500

    Merge pull request NOAA-EMC#28 from NOAA-EMC/feature/metplus2

    Issue NOAA-EMC#8 - add switch for MET+ jobs

commit 2552467
Author: kate.friedman <[email protected]>
Date:   Thu Mar 5 13:31:02 2020 +0000

    Issue NOAA-EMC#8 - add switch for MET+ jobs

commit 1b359db
Merge: 0359d34 31bb7d3
Author: Kate Friedman <[email protected]>
Date:   Wed Mar 4 10:19:36 2020 -0500

    Merge pull request NOAA-EMC#26 from NOAA-EMC/feature/metplus

    Feature/metplus - refactored MET+ jobs to resolve timing issues

commit 31bb7d3
Merge: eb73e52 0359d34
Author: Mallory Row <[email protected]>
Date:   Wed Feb 19 15:24:42 2020 +0000

    Merge branch 'develop' into feature/metplus

commit f662fff
Author: kate.friedman <[email protected]>
Date:   Fri Feb 14 15:57:05 2020 +0000

    Issue NOAA-EMC#3 - Updated README with new manic tag v1.1.7

commit e3196a8
Author: Kate Friedman <[email protected]>
Date:   Thu Feb 13 15:59:06 2020 -0500

    Update README.md

commit e46b175
Merge: 4bd0e20 0359d34
Author: Kate.Friedman <[email protected]>
Date:   Thu Feb 13 20:38:04 2020 +0000

    Issue NOAA-EMC#3 - sync merge with develop branch

commit 0359d34
Merge: 1d9a1f0 bd00cb9
Author: Hang-Lei-NOAA <[email protected]>
Date:   Thu Feb 13 09:53:59 2020 -0500

    Merge pull request NOAA-EMC#19 from NOAA-EMC/feature/remove_theia

    Feature/remove theia

commit eb73e52
Author: Mallory Row <[email protected]>
Date:   Fri Feb 7 14:04:37 2020 +0000

    Update EMC_verif-global checkout to verif_global_v1.5.0

commit bd00cb9
Author: Kate.Friedman <[email protected]>
Date:   Fri Feb 7 13:41:05 2020 +0000

    Issue NOAA-EMC#4 - bug fix in getic.sh for v15

commit 1c85197
Merge: 67dae40 1d9a1f0
Author: Kate.Friedman <[email protected]>
Date:   Fri Feb 7 13:27:18 2020 +0000

    Issue # 4 - Sync merge branch 'develop' into feature/remove_theia

commit 1d9a1f0
Merge: 3ed9267 bdbecaa
Author: Kate Friedman <[email protected]>
Date:   Fri Feb 7 08:11:21 2020 -0500

    Merge pull request NOAA-EMC#18 from lgannoaa/exception_handling

    Exception handling

commit 4bd0e20
Author: Kate Friedman <[email protected]>
Date:   Thu Feb 6 11:55:31 2020 -0500

    Update README.md

commit d9ea1ac
Author: Kate.Friedman <[email protected]>
Date:   Thu Feb 6 16:03:11 2020 +0000

    Issue NOAA-EMC#3 - reduce hashes down to minimum 8 characters

commit bdbecaa
Author: Lin.Gan <[email protected]>
Date:   Wed Jan 29 15:15:52 2020 +0000

    Display exception handling message for individual package with location of the log file

commit b64fd5f
Merge: cf00863 3ed9267
Author: kate.friedman <[email protected]>
Date:   Tue Jan 28 15:24:37 2020 +0000

    Merge branch 'develop' into feature/manage_externals

commit cf00863
Author: kate.friedman <[email protected]>
Date:   Tue Jan 28 15:23:14 2020 +0000

    Issue NOAA-EMC#3 - remove copy of manage_externals under util and add README.md file

commit c12e879
Author: Lin.Gan <[email protected]>
Date:   Mon Jan 27 19:38:19 2020 +0000

    Implement exception handling in build_all script

commit bfc7bb0
Author: Kate.Friedman <[email protected]>
Date:   Mon Jan 27 19:06:17 2020 +0000

    Issue NOAA-EMC#3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds.

commit 4d5713d
Author: Lin.Gan <[email protected]>
Date:   Fri Jan 24 15:51:28 2020 +0000

    Testing github commit

commit 786806f
Author: Mallory Row <[email protected]>
Date:   Fri Jan 24 15:04:16 2020 +0000

    Missed file format updates in a few places in config.metp

commit d0a3b53
Author: Lin.Gan <[email protected]>
Date:   Fri Jan 24 14:30:29 2020 +0000

    init commit for exception handling branch

commit c11dfef
Author: Mallory Row <[email protected]>
Date:   Fri Jan 24 14:07:29 2020 +0000

    Update EMC_verif-global tag to verif_global_v1.4.1

commit 0ea809c
Author: Mallory Row <[email protected]>
Date:   Thu Jan 23 13:29:56 2020 +0000

    Update file format variable in config.metp of online archive files

commit c0d7179
Author: Mallory Row <[email protected]>
Date:   Tue Jan 21 16:37:16 2020 +0000

    Add updated env machine files for gfsmetp

commit 82e6907
Author: Mallory Row <[email protected]>
Date:   Tue Jan 21 16:29:23 2020 +0000

    Update config.resources for gfsmetp

commit 72e8adf
Author: Mallory Row <[email protected]>
Date:   Tue Jan 21 16:19:31 2020 +0000

    Update EMC_verif-global tag checkout to 1.4.0

commit 6872f79
Author: Mallory Row <[email protected]>
Date:   Tue Jan 21 16:14:25 2020 +0000

    Add rocoto METplus job script

commit 9c94156
Author: Mallory Row <[email protected]>
Date:   Tue Jan 21 16:09:13 2020 +0000

    Changes to setup_workflow.py for gfsmetp metatask

commit 3ed9267
Author: kate.friedman <[email protected]>
Date:   Tue Jan 14 19:32:36 2020 +0000

    Issue NOAA-EMC#10 - mid-year update to bufr station list (develop)

commit 1915aa9
Author: kate.friedman <[email protected]>
Date:   Fri Jan 10 18:36:32 2020 +0000

    Issue NOAA-EMC#8 - pulled in config.metp and modifications to two setup scripts

commit 67dae40
Merge: f78eb1b 091f4ba
Author: kate.friedman <[email protected]>
Date:   Wed Jan 8 20:15:45 2020 +0000

    Merge branch 'develop' into feature/remove_theia

commit f78eb1b
Author: kate.friedman <[email protected]>
Date:   Wed Jan 8 20:13:08 2020 +0000

    Issue NOAA-EMC#4 - removed references to Theia and Theia scripts

commit 091f4ba
Author: kate.friedman <[email protected]>
Date:   Wed Jan 8 19:37:45 2020 +0000

    Issue NOAA-EMC#7 - missed update to gdas transfer file from GFSv15.2.5 updates

commit 3fd4bcf
Author: kate.friedman <[email protected]>
Date:   Tue Dec 17 19:12:28 2019 +0000

    GitHub Issue NOAA-EMC#2 - GFSv15.2.6 obsproc version update, earc bug fix, and tracker path update

commit 5307952
Author: Kate.Friedman <[email protected]>
Date:   Wed Dec 11 20:47:44 2019 +0000

    HOTFIX - VLab Issue #72346 - fix to rocoto_viewer on Hera
@KateFriedman-NOAA
Copy link
Member Author

Will use contrib documentation for Hera to setup manage_externals module there:

https://rdhpcs-common-docs.rdhpcs.noaa.gov/wiki/index.php/Managing_Packages_in_/contrib

jkhender added a commit to jkhender/global-workflow that referenced this issue Apr 13, 2020
@jkhender
Merge branch 'feature/gfsv16b' into gmtb_ccpp_hera
d9fb3a1 
   Squashed commit of the following:

   commit 073e5f64eab5badbd8a30b2ea702ce27159186fe
   Author: fanglin.yang <[email protected]>
   Date:   Thu Apr 9 16:44:14 2020 +0000

       modified:   arch.sh add external reference to VFRARCH.

   commit 53c818babc7c5e3dadc089823604b58bcb31bf0f
   Author: fanglin.yang <[email protected]>
   Date:   Thu Apr 9 16:30:04 2020 +0000

       modified:   arch.sh to clean old data under vrfyarch and touch remaining data to
                   prevent them from being removed by the operation system

   commit 44dd4c28609d4e7c24cf87d5f69796ea8f7a6245
   Author: russ.treadon <[email protected]>
   Date:   Thu Apr 9 12:00:15 2020 +0000

       Issue #1:  update selection of global_convinfo.txt and prepobs_errtable.global to be consistent with GFS v15.2.11

   commit a8b655c0b543b1a3d94b7bb70130e58c2a747663
   Author: fanglin.yang <[email protected]>
   Date:   Thu Apr 9 02:50:32 2020 +0000

       modified:   module_base.hera and  module_base.wcoss_dell_p3 to point to esmf/8.0.1bs08

   commit 4c1acf26cac49b9dd26ad404c6547cea1a969b7f
   Author: fanglin.yang <[email protected]>
   Date:   Thu Apr 9 02:18:43 2020 +0000

       modified:   checkout.sh to point to model tag GFS.v16.0.2, which includes following updates
           https://github.com/ufs-community/ufs-weather-model/pull/100
           * in FV3: code changes to improve atm fcst->wrt data transfer and fix iau restart files
           * in NEMS: Code changes are added to reduce the atm->wav coupling time and to turn off flush for esmf print in MAIN_NEMS.F90
           * When print_esmf is .true., set Verbosity = high and HierarchyProtocol = off in atm-wav nems.configure (print_esmf can be off in model_confgiure at run time).
           * update esmf lib to esmf801bs08.

   commit 41b68b5b7257a6f5a3ee1c88f3b8d3251b8097a9
   Merge: 556614f5 ad9dd289
   Author: Fanglin Yang <[email protected]>
   Date:   Tue Apr 7 00:15:44 2020 -0400

       Merge pull request #51 from ajhenrique/bugfix/gfsv16b_sbspost

       Wave component workflow updates

   commit ad9dd28990f6ee6727f6dec43d335545c979093e
   Merge: 3b135fe9 556614f5
   Author: henrique.alves <[email protected]>
   Date:   Mon Apr 6 00:01:32 2020 +0000

       Merging changes in gfsv16b: pointing to junwang:ufs-weather-model:esmf8.0.1

   commit 3b135fe9b6a2adfd337aa5c59188a3641ca68432
   Author: henrique.alves <[email protected]>
   Date:   Sun Apr 5 23:54:36 2020 +0000

       Adding ROTDIR path for operationalnco envir

   commit 556614f596f1e3fdb0dca3affe320aaea3650b23
   Author: fanglin.yang <[email protected]>
   Date:   Sat Apr 4 00:40:20 2020 +0000

       modified:   sorc/checkout.sh to check out model branch checkout gfsv16_chsp which contains physics updates (czil,
                   background diffusitivity and mixing length over stable boundary layer, and canopy heat storage) for
                   reducing surface cold biases.
       modified:   parm/config/config.fcst, tunn on canopy heat storage for slm=1.

   commit 83c546b74d1c8fae22535082dec8cc03d8477ad7
   Author: Henrique Alves <[email protected]>
   Date:   Fri Apr 3 18:55:08 2020 +0000

       Adding back input file setting in global config.wave script. Changing print_esmf to .false. to supress verbosity in esmf library calls

   commit 551ae13fcaf35f86580707bba583bc3b825d796b
   Author: Henrique Alves <[email protected]>
   Date:   Fri Apr 3 15:52:01 2020 +0000

       Added RUN_ENVIR variable to wave j-jobs. Removed wavelog from wave scripts, now using only jlogfile

   commit 6c803647fb3c8c14e5da032b0f14add219d74cb5
   Author: Henrique Alves <[email protected]>
   Date:   Fri Apr 3 15:39:34 2020 +0000

       Updated KEEPDATA block and added exit 0 to wave j-jobs

   commit 42e08a505263aee0c990417487e7a62d37405d80
   Author: Henrique Alves <[email protected]>
   Date:   Fri Apr 3 15:34:38 2020 +0000

       Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files

   commit ddb1b953789b4253d70db9bceb2e9a2d5b6fcc43
   Author: Henrique Alves <[email protected]>
   Date:   Fri Apr 3 15:33:12 2020 +0000

       Updated wavempexec and wave_mpmp to point to variables launcher and mpmp defined in env files

   commit 6c272f9e0cb13da7481431c60fc5f4c494d8fb87
   Author: Henrique Alves <[email protected]>
   Date:   Fri Apr 3 15:06:29 2020 +0000

       Unified calls to EXECwave and EXECcode. Removed legacy ush/wave_* scripts.

   commit 6e1e023b2e2d547b3429bd66a724c735db542c74
   Author: Henrique Alves <[email protected]>
   Date:   Fri Apr 3 13:26:18 2020 +0000

       emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file.

   commit d5d3701eb32f3a9052d2bb9944bb2a402cd95018
   Author: Henrique Alves <[email protected]>
   Date:   Fri Apr 3 13:25:54 2020 +0000

       emoved commented out parameter definitions (legacy) from config files. Moved variables/parms specific to single wave steps out of general config.wave file.

   commit 84c8730053c930508bf4ca211b1440ce32f735a1
   Merge: 8ef7dee8 49faf67f
   Author: Henrique Alves <[email protected]>
   Date:   Thu Apr 2 19:57:12 2020 +0000

       Merge remote-tracking branch 'gfsv16b/feature/gfsv16b' into bugfix/gfsv16b_sbspost

   commit 8ef7dee8b60cf548b8c0fbe95a57d8a49845ac38
   Author: Henrique Alves <[email protected]>
   Date:   Thu Apr 2 19:54:07 2020 +0000

       Adding idx file for subgrid grib2 files. Redirecting subgrid grib2 source to new native wave grid gnh_10m. Correcting bug on timing of second restart file stream on gdasfcst runs

   commit 4355153d85c4d9a553dc4838659005a791fe12d7
   Author: Henrique Alves <[email protected]>
   Date:   Wed Apr 1 19:44:37 2020 +0000

       adding hooks and parms for new wave model grids in several scripts.

   commit 49faf67fd401856923947972053395d351330ede
   Author: Boi Vuong <[email protected]>
   Date:   Mon Mar 30 14:32:42 2020 +0000

       GitHub Issue #1 updated AWIPS parm cards with DZDT

   commit 84c28812d8d681c486132bb02cb9478055ec88b1
   Merge: 7470bfe4 0e0dc873
   Author: russ.treadon <[email protected]>
   Date:   Fri Mar 27 18:50:36 2020 +0000

       Issue #1: Merge branch 'develop' at 0e0dc87 into feature/gfsv16b

   commit 7470bfe459fcb28751800b525d9387fbc486b8e3
   Author: russ.treadon <[email protected]>
   Date:   Fri Mar 27 18:34:52 2020 +0000

       Issue #1:  maintenance and consistency updates

        * modulefiles/module_base.wcoss_dell_p3 - change prod_envir from version 1.0.2 to 1.1.0

        * scripts/exglobal_fcst_nemsfv3gfs.sh - add PREFIX_ATMINC for EnKF.  PREFIX_ATMINC defaults to a blank string - no change in current behavior

        * ush/hpssarch_gen.sh - add ensemble mean sfcfXXX to enkf tarball

   commit 79b91dc2399609d806b99f0ed5271494d1bab6d0
   Author: Henrique Alves <[email protected]>
   Date:   Fri Mar 27 04:46:51 2020 +0000

       Adding missing cd fv3gfs.fd back in checkout.sh

   commit 0e0dc873ceff26f9666fc40287ad2457171719c7
   Merge: b133700a 95a63432
   Author: Kate Friedman <[email protected]>
   Date:   Thu Mar 26 10:54:44 2020 -0400

       Merge pull request #42 from NOAA-EMC/hotfix/viewer

       Issue #41 - Update PRODUTIL paths for WCOSS in viewer

   commit 95a63432f3fbdd8745d0617089485cdc332f57e7
   Author: kate.friedman <[email protected]>
   Date:   Thu Mar 26 14:43:44 2020 +0000

       Issue #41 - Update PRODUTIL paths for WCOSS in viewer

   commit b133700a4a65fe5334e5b5522a8c6f83bf0bbd0c
   Author: kate.friedman <[email protected]>
   Date:   Thu Mar 26 13:01:38 2020 +0000

       Issue #21 - correct syntax for machine if-blocks in setup_expt scripts

   commit c3fbe7970c03aaad8e5b511b9d43931da9382fd3
   Author: Henrique Alves <[email protected]>
   Date:   Thu Mar 26 12:05:46 2020 +0000

       Adding new grids, changes to modulefiles for poiting to new esmf module

   commit f4ee5098988106037528650ba8a15922150b70af
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 25 20:52:49 2020 +0000

       Issue #21 - remove unneeded logic from partition check

   commit 4acc80f6037a4d0fd43a64e9178e7aadbd6162f5
   Merge: accb6f4b fb1c79f4
   Author: Hang-Lei-NOAA <[email protected]>
   Date:   Wed Mar 25 15:22:51 2020 -0400

       Merge pull request #40 from NOAA-EMC/port2wcoss3p5

       Issue #21 - Add support for WCOSS phase 3.5

   commit fb1c79f4b7136e09c9d35d9d05303116036f58c9
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 25 16:06:54 2020 +0000

       Issue #21 - updated WCOSS phase 3.5 queues

   commit 08a535492952d863f860977f0ab0da4bc79bc931
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 25 14:58:14 2020 +0000

       Issue #21 - add phase 3.5 support

       - add partition option to setup scripts
       - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts
       - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files

   commit be21d3f2bc06ef8e7e31edce08756ee6aee36d31
   Author: Henrique Alves <[email protected]>
   Date:   Tue Mar 24 20:10:07 2020 +0000

       Poiting exec to new location of ww3 executables (HOMEgfs/exec). Adding new NH 1/6, SH 1/4 deg grids for testing

   commit c4cc28b08ca58007882e9823a68f26c2c5eaf92b
   Author: kate.friedman <[email protected]>
   Date:   Tue Mar 24 17:22:55 2020 +0000

       Fix wave config begin and end echos

   commit 20d79d274be862b7147f17cd7654f2c770ce7425
   Merge: 3efe1c23 accb6f4b
   Author: russ.treadon <[email protected]>
   Date:   Mon Mar 23 18:19:08 2020 +0000

       Issue #1:  Merge branch 'develop' accb6f4 into feature/gfsv16b

   commit accb6f4b919871221e8037d5f154b157d88d1102
   Merge: 057b2a82 8b51b56f
   Author: Kate Friedman <[email protected]>
   Date:   Mon Mar 23 14:01:30 2020 -0400

       Merge pull request #39 from NOAA-EMC/feature/verif-tag

       Issue #38 - update EMC_verif-global pointer from VLab to GitHub

   commit 8b51b56f84289d1c01863b61421b21eccd22939c
   Author: kate.friedman <[email protected]>
   Date:   Mon Mar 23 17:40:18 2020 +0000

       Issue #38 - update EMC_verif-global pointer from VLab to GitHub

   commit 3efe1c23fbe906953f3df4e6e6b43a604505dcf1
   Author: Fanglin Yang <[email protected]>
   Date:   Sun Mar 22 16:49:40 2020 +0000

       update arch.sh to remove selected RESTART files

   commit 586d0994aab2348c1deea521b37183ddf0a8f2d7
   Author: kate.friedman <[email protected]>
   Date:   Thu Mar 19 14:01:16 2020 +0000

       Issue #1 - update EMC_verif-global to tag verif_global_v1.6.0 in Externals.cfg

   commit f412f2ca8071baa6bd91f641c1fd8102e9271bef
   Author: russ.treadon <[email protected]>
   Date:   Thu Mar 19 13:53:34 2020 +0000

       Issue #1:  update EMC_verif-global to tag verif_global_v1.6.0

   commit 94abe6a1caca4724fbc580d58928a6cf74a65590
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 18 19:02:09 2020 +0000

       Fix syntax error in setup_workflow_fcstonly.py

   commit 06ff92be074bac2728055a62ce0fa263a4d13cf6
   Author: Guang Ping Lou <[email protected]>
   Date:   Tue Mar 17 18:10:37 2020 +0000

       modify job card for tests

   commit a2b76f1d402c8568612dc727ebf36b548748589d
   Author: Guang Ping Lou <[email protected]>
   Date:   Tue Mar 17 18:10:04 2020 +0000

       modify namsnd TIMSTN

   commit 81bc3fc4090c4fd3bdec070abd9c117d5a09491d
   Author: Guang Ping Lou <[email protected]>
   Date:   Tue Mar 17 18:09:24 2020 +0000

       modify collectives mpmd design

   commit 9cbf9be8ea2a959a6711c10838ba46347451b7d1
   Author: Guang Ping Lou <[email protected]>
   Date:   Tue Mar 17 18:08:41 2020 +0000

       modify config.resources for postsnd number of tasks

   commit e3945e03031db23dbb8681e3d1034cc07377ae2d
   Author: russ.treadon <[email protected]>
   Date:   Mon Mar 16 10:38:07 2020 +0000

       Issue #1:  add logic to check WAVE_CDUMP prior to setting npe_fcst_gfs

   commit 6fdc6365fa13c77f01ae0cdb82e74bbbd149f914
   Author: russ.treadon <[email protected]>
   Date:   Mon Mar 16 10:35:14 2020 +0000

       Issue #1: DA workflow updates for GFS v16 (does not change results)

   commit c728925aaf6f8c2aac170e6987ed34e28e411053
   Author: Henrique Alves <[email protected]>
   Date:   Sun Mar 15 17:16:56 2020 +0000

       Changes to test IOSTYP=3 and correct restart lines on ww3_multi.inp for rexcluding WW3 restarts.

   commit 9bc784f708e09e9f5392c662cae2ed51cfb09011
   Author: Henrique Alves <[email protected]>
   Date:   Sat Mar 14 17:43:00 2020 +0000

       Changes to allow GFS fcsr cycle to have WW3 restart specs different to GDAS fcst (eg, turn off or on for GFS)

   commit 91610f80cef8911ac6aaae2ded67a95b4ff1d061
   Author: russ.treadon <[email protected]>
   Date:   Wed Mar 11 17:25:36 2020 +0000

       Issue #1:  update Externals.cfg to GFS v16 components

   commit 7dcf23281cddb9aabc20c73ec077a9a52ded56b8
   Merge: 55130516 057b2a82
   Author: russ.treadon <[email protected]>
   Date:   Wed Mar 11 17:21:33 2020 +0000

       Issue #1:  Merge branch 'develop' at 057b2a8 into feature/gfsv16b

   commit 057b2a82fa43f7bc36c3e757ca7d48fb86b9541c
   Merge: 0377d20f 622167d5
   Author: Kate Friedman <[email protected]>
   Date:   Wed Mar 11 12:00:58 2020 -0400

       Merge pull request #29 from NOAA-EMC/feature/manage_externals

       Issue #3 - Introduce manage_externals as replacement for checkout.sh

   commit 50649e274d2b074f4d3c6f18503b8bb6997a5bde
   Author: Henrique Alves <[email protected]>
   Date:   Wed Mar 11 03:16:10 2020 +0000

       General cleanup for reducing size of wavepostsbs RUNDIR and improve runtime. Reorganized parameters in postsbs to provide more clarity and upfront control and the config.wave level

   commit 55130516cea5ea67b758b52c9445aca667e1c35a
   Author: kate.friedman <[email protected]>
   Date:   Mon Mar 9 13:59:44 2020 +0000

       Add ability to have wave jobs depending on cdump

   commit 622167d5fb3322921a1702639ebccb42da1f5e1b
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 18:20:31 2020 +0000

       Issue #3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh

   commit e83b90d50999f64ed5208d94a8cceb8179c9395f
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 17:00:15 2020 +0000

       Issue #3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already

   commit 8699b46aa1797e8dd29edff1d4bd3b511ad5cb1c
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 16:30:54 2020 +0000

       Issue #3 - updated README with new manic version

   commit e602cd3d536b55b86b04285aedd5781d8d3a9f82
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 16:27:57 2020 +0000

       Issue #3 - updated link_fv3gfs.sh to adjust wafs links

   commit 830c73f430d70cc516dea419a8969c6fd9fc0910
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 15:21:45 2020 +0000

       Issue #3 - update EMC_verif-global tag in Externals.cfg after sync with develop

   commit 40084e67810d21366d0e9af6d9937c29aa4965ad
   Merge: f662fffa 0377d20f
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 15:18:52 2020 +0000

       Issue #3 - Merge branch 'develop' into feature/manage_externals

   commit cfa5be4b414f67efa8eb17c8fe5060fe94cd48ea
   Author: kate.friedman <[email protected]>
   Date:   Fri Mar 6 14:05:29 2020 +0000

       Issue #1 - remove gfswave restart archival

   commit 85b3a1d24e89c60e9977ecc549656a0145caeb8b
   Author: russ.treadon <[email protected]>
   Date:   Thu Mar 5 18:51:22 2020 +0000

       Issue #1:  update postsnd section of config.resources

   commit 6c8dc92953e5c003882ffbb8376a8b1b2c8668d2
   Author: russ.treadon <[email protected]>
   Date:   Thu Mar 5 18:40:38 2020 +0000

       Issue #1:  update config files to be consistent with settings in pre-implementation GFS v16 real-time and retrospective parallels

        * parm/config/config.anal - reduce second outer loop iteration count for gfs
        * parm/config/config.epos - add ENKF_SPREAD to toggle on/YES or off/NO generation of ensemble spread files
        * parm/config/config.fcst - set adjust_dry_mass for GDAS (true) and GFS (false)
        * parm/config/config.fv3 - remove nth_efcs, set C384 nth_fv3=1
        * parm/config/config.resources - set nth_efcs to nth_fv3 (default 2)

   commit a107109d8fdd0292a3017f26e56863fbb28a63ce
   Author: kate.friedman <[email protected]>
   Date:   Thu Mar 5 16:08:23 2020 +0000

       Fixed bug in config.fcst related to extra then

   commit 0de559a088ac670f2b105168988c18ee1b57488a
   Author: russ.treadon <[email protected]>
   Date:   Thu Mar 5 15:55:50 2020 +0000

       Issue #1:  update exglobal_fcst_nemsfv3gfs.sh and checkout.sh

        * scripts/exglobal_fcst_nemsfv3gfs.sh - turn on adjust_dry_mass with dry_mass=98320.0, turn off iau_drymassfixer

        * sorc/checkout.sh - update to model tag GFS.v16.0.1

   commit ce23e52730a9f6fe20215cb47563dd6f2dcb254a
   Merge: fa7bca5a 0377d20f
   Author: russ.treadon <[email protected]>
   Date:   Thu Mar 5 15:36:50 2020 +0000

       Issue #1:  Merge branch 'develop' at 0377d20 into feature/gfsv16b

   commit 0377d20f3d019f77a47fc9860d6146fd3c8e5d94
   Merge: 1b359dbe 25524675
   Author: Kate Friedman <[email protected]>
   Date:   Thu Mar 5 08:43:16 2020 -0500

       Merge pull request #28 from NOAA-EMC/feature/metplus2

       Issue #8 - add switch for MET+ jobs

   commit 25524675a63e59829655bbd9a09abc4dca246357
   Author: kate.friedman <[email protected]>
   Date:   Thu Mar 5 13:31:02 2020 +0000

       Issue #8 - add switch for MET+ jobs

   commit fa7bca5a5fb26886219190e9e5e5d6efb9f9ddab
   Merge: af73a39f cd67f975
   Author: Kate Friedman <[email protected]>
   Date:   Thu Mar 5 08:08:57 2020 -0500

       Merge pull request #25 from NOAA-EMC/feature/wave2global

       Feature/wave2global into feature/gfsv16b

   commit cd67f97592227fea0238327dade887d4584300c3
   Merge: c72d7b5b af73a39f
   Author: kate.friedman <[email protected]>
   Date:   Thu Mar 5 13:03:10 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit c72d7b5bca4a67e83916edd17fb0e5c4612a7867
   Author: Jose-Henrique Alves <[email protected]>
   Date:   Wed Mar 4 23:53:41 2020 -0500

       Clean up exwave_post_sbs

   commit 2e738f20930dfd7d5216920ec7cc26774be811f3
   Author: Henrique Alves <[email protected]>
   Date:   Thu Mar 5 04:03:44 2020 +0000

       Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh.

   commit b7638436b1e737077fbb2dad705e7ed157df261e
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 4 21:02:04 2020 +0000

       Fix to JWAVE_PREP to look back a day for rtofs

   commit 33cf0fc0f2a5d3b3ca749c9941835398f94e7606
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 4 19:59:56 2020 +0000

       Adjustments after going through PR review

   commit 1b359dbeb31b94382619dfc9c67e77fffe46aaa0
   Merge: 0359d342 31bb7d32
   Author: Kate Friedman <[email protected]>
   Date:   Wed Mar 4 10:19:36 2020 -0500

       Merge pull request #26 from NOAA-EMC/feature/metplus

       Feature/metplus - refactored MET+ jobs to resolve timing issues

   commit 5c8fa3dd2666b7fd90b473fb12629016ef402e3e
   Author: kate.friedman <[email protected]>
   Date:   Wed Mar 4 13:03:12 2020 +0000

       Adjust restart_interval if-blocks for DOIAU=YES in configs

   commit 2b337a8f8c900146905915032826faf9e6f07dc0
   Merge: a4daafee e0a1a0ae
   Author: Henrique Alves <[email protected]>
   Date:   Tue Mar 3 18:31:09 2020 +0000

       Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global

   commit a4daafeecaf3fed38e637389ab5f4041b5139a4c
   Author: Henrique Alves <[email protected]>
   Date:   Tue Mar 3 18:30:58 2020 +0000

       Adjustment to waveprep resources to match numbger of rtofs files, bugfix on generation of ascii spectral data

   commit af73a39fc8ae7868ea9d08081b98f84345fa4f95
   Author: Boi Vuong <[email protected]>
   Date:   Tue Mar 3 13:44:59 2020 +0000

       Github Issue #1 Updated postsnd.sh

   commit e0a1a0aeb4066ab834fd93a86780196f55a7a447
   Author: kate.friedman <[email protected]>
   Date:   Mon Mar 2 18:45:50 2020 +0000

       Fix gdasfcst dep on gldas

   commit 817f8faa6b0c71ef970da302d6e46b57c9ea8129
   Merge: 48ed4c5f 203d1747
   Author: kate.friedman <[email protected]>
   Date:   Mon Mar 2 13:41:13 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit 48ed4c5f4a6b0093941a97d475abdb6bed2937e5
   Author: Henrique Alves <[email protected]>
   Date:   Mon Mar 2 04:22:02 2020 +0000

       General cleanup. wavepostsbs wall time limit matches gfsfcst walltime .

   commit 4af83a430a8bb58f83d686535d39d9745de9ab6c
   Author: Henrique Alves <[email protected]>
   Date:   Sun Mar 1 02:51:02 2020 +0000

       Cleaning up prior to merging to gfsv16b

   commit 14f52dd35b7d6a1a9b98cff0da2426015cfabd3d
   Merge: 4400d7c3 d39ba74d
   Author: Henrique Alves <[email protected]>
   Date:   Sat Feb 29 18:23:17 2020 +0000

       Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global

   commit 4400d7c3e5e26bacc0ba892ef3178d4d906d57a8
   Author: Henrique Alves <[email protected]>
   Date:   Sat Feb 29 18:23:13 2020 +0000

       Changes to feal with waveprep and wavepost

   commit 203d174798aae0d4e581930fa8f49abb8421f81f
   Author: russ.treadon <[email protected]>
   Date:   Sat Feb 29 01:17:57 2020 +0000

       Issue #1:  two GFS v16 DA updates

        * sorc/checkout.sh - check out ProdGSI tag gfsda.v16.0.0

        * parm/config/config.anal - remove REALTIME=NO section since not needed

   commit d39ba74d71b5bd5c510eb32cac17facdbe5a9a49
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 28 19:01:02 2020 +0000

       Removed extra forward slashes in wave part of hpssarch_gen.sh

   commit 82889365da44196804b7d751a1c8c5992ca102ea
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 28 18:44:13 2020 +0000

       Added waves to archival

   commit a8f4200d04d7c49a1ff1cd443f1f36fd949cb5db
   Merge: 9321bdc9 8997f2a2
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 28 13:58:28 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit 9321bdc9a5a85a4b458b3539bb4f15bdcbf2cf33
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 28 13:39:34 2020 +0000

       Cleanup and added adjustments to other env files

   commit 8997f2a27a45ee018d33abdf1883914a38c88ffd
   Author: russ.treadon <[email protected]>
   Date:   Thu Feb 27 14:37:24 2020 +0000

       Issue #1:  check existence of EnKF spread file before adding to HPSS archive list

   commit 2d6620e9b961f290daab1369778644c799bec5cc
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Thu Feb 27 13:45:39 2020 +0000

       rm nemsio utility

   commit 0120cf577df7faf2413e0b585423728ecd62657d
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Thu Feb 27 13:40:45 2020 +0000

       modify config.resources for postsnd ppn=4

   commit 0891840f8f43dccdd81573f2d6513b573de921aa
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Thu Feb 27 13:32:07 2020 +0000

       modify config.resources for postsnd ppn=4

   commit 67e20de5ac6e8f52312bc71adc5419330ebe6542
   Author: Henrique Alves <[email protected]>
   Date:   Thu Feb 27 04:22:36 2020 +0000

       Adding current smoothing flag to config.wave. Previous push alos contained changes to reflect improved wave model physics.

   commit 10164bdae0fdc53a604dc8e58b2a6a5fce5ebc99
   Author: Henrique Alves <[email protected]>
   Date:   Thu Feb 27 03:47:36 2020 +0000

       Adjustments to use gfs/gdas seaice file instead of omb file. Changes to intake rtofs 1hr files when available.

   commit 7145fd01ffcf3043dd1dea458ae866f208f32633
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 26 19:34:24 2020 +0000

       Modify prep.sh to create rtofs symlink in ROTDIR if DO_WAVE=YES

   commit 5ac8c8683b6f3de8cc586bae8d3825b2bd67011c
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 26 18:44:45 2020 +0000

       Fix for missing nth_postsnd in config.resources

   commit 91456a9b7cfc285b78ec083a419592fafe6f75d0
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Wed Feb 26 15:52:32 2020 +0000

       modified config.resources for bufrsnd

   commit 011a393c162a422859b1184e9f32dd50d1d48882
   Merge: d01c3543 8806c9e4
   Author: Kate.Friedman <[email protected]>
   Date:   Wed Feb 26 13:50:49 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit d01c3543e59bbabb491454788f17e818305de6fc
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 26 13:48:26 2020 +0000

       Updates to checkout.sh from feature/gfsv16b

   commit 8806c9e4e3572169146a2ba3605a86680e35287c
   Merge: e87695c8 318d8b46
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Wed Feb 26 13:45:13 2020 +0000

       Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b
       Commit NetCDF parallel reading capability.

   commit 3b5d451aa165dc368c674cd2a71d6786097869e7
   Merge: 88d8abda 318d8b46
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 26 13:43:52 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit e87695c8b151e3c64cafed97ad921849d3998ece
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Wed Feb 26 13:42:41 2020 +0000

       reinstate nemsio utility files for namsio data format

   commit 318d8b46ff7269899db92ae72f68fa1110406a16
   Author: russ.treadon <[email protected]>
   Date:   Tue Feb 25 20:17:40 2020 +0000

       Issue #1:  add gldas and esfc to the list of log files to write to HPSS

   commit 6102b6971fc9ee1f5dfc20c98a625b20e7f2cbbc
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Tue Feb 25 19:32:21 2020 +0000

       Adding a parallel reading interface

   commit c0b9ddc5dfe0d5dfcf1592fabf295ad951cc20b3
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Tue Feb 25 19:31:19 2020 +0000

       adding parallel reading interface

   commit 057b10cc02f66cdede531a04967a2d6a51efb148
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Tue Feb 25 19:30:16 2020 +0000

       Clean up un-used variable

   commit 25ac8f0a64ea710e7b8dd55dd3d03cdfd600c671
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Tue Feb 25 19:28:59 2020 +0000

       Modify to call parallel reading subroutine

   commit c1a25a5ec5d46d52cd931b5178abba45bfb41345
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Tue Feb 25 19:20:26 2020 +0000

       parallelizing gfsbufr.f for reading NetCDF files

   commit b28020f0c03ce54db3022de43ecc0f7119bce6d2
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Tue Feb 25 19:17:32 2020 +0000

       modify driver for parallel read test

   commit bce7d9642decf393e2b314e837f557765a6382b8
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Tue Feb 25 19:14:45 2020 +0000

       modify postsnd resource for parallel read

   commit f89912416cf5347fbcd6e1378aae61e99ffa14ac
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Tue Feb 25 18:59:26 2020 +0000

       remove testing jobs script JGFS_POSTSND_netcdf

   commit 88d8abda4adf3c945b1c5526dfca6b1774b91f3b
   Merge: 33c65a19 9d6e8464
   Author: kate.friedman <[email protected]>
   Date:   Tue Feb 25 17:49:29 2020 +0000

       Sync merge with feature/gfsv16b

   commit 9d6e8464aa207da41901278c9e5454efd9e475a2
   Author: fanglin.yang <[email protected]>
   Date:   Tue Feb 25 04:45:44 2020 +0000

       setup_workflow_fcstonly.py failed.
       Updated to get "reservation" from config.base.

   commit 36367563af24402db621179bda139f17d3ca1d44
   Author: russ.treadon <[email protected]>
   Date:   Mon Feb 24 20:37:27 2020 +0000

       Issue #1:  update config files for use in GFS v16 real-time and retrospective parallels

   commit 33c65a19cbe68342cd9ab3f434a22a399be3a1b4
   Merge: 9a1f79d7 0aa8dacf
   Author: Henrique Alves <[email protected]>
   Date:   Mon Feb 24 15:37:48 2020 +0000

       Bugfix for creating spectra files in wavepostsbs step

   commit 0aa8dacfeef3fd1bf3abe368c9cdaf9a16b57cde
   Merge: 8148766c 431c7866
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 21 13:57:55 2020 +0000

       Merge branch 'feature/gfsv16b' into feature/wave2global

   commit 8148766c489057553e20fc42bad494f1ed5aa70c
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 21 13:56:56 2020 +0000

       Small fix to exglobal_fcst_nemsfv3gfs.sh

   commit 431c78668c98268cb749397ec8218428104c9687
   Author: russ.treadon <[email protected]>
   Date:   Thu Feb 20 15:19:42 2020 +0000

       Issue #1:  remove RESERVATION from archive jobs

   commit ebf02b19f98f90ae3c8bc57cc5c2325260aaab0a
   Author: kate.friedman <[email protected]>
   Date:   Thu Feb 20 14:05:52 2020 +0000

       Remove output_1st_tstep_rst override and add iau_drymassfixer

   commit 36cb42dc5d8985f8402405dce811f04063f572ab
   Author: Henrique Alves <[email protected]>
   Date:   Thu Feb 20 12:30:28 2020 +0000

       Removing references to gens/gefs from exglobal_fcst_fcst_nemsfv3gfs.sh in preparation for merge back to gfsv16b

   commit 9a1f79d7aa0343ea95d1af419f55a2d0d356e99d
   Author: Henrique Alves <[email protected]>
   Date:   Thu Feb 20 12:19:11 2020 +0000

       Adding back lost and found EOF in section that creates input.nml

   commit 635d95d58c932909dc6a29c62515c385dc01587a
   Merge: f31de5aa c4454b3a
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 19 20:42:49 2020 +0000

       Additional sync merge with feature/gfsv16b today

   commit f31de5aaa6c915ac8bc1184726bead71dc9157d4
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 19 20:18:23 2020 +0000

       Removing copies of exglobal_fcst that were added erroneously

   commit c4454b3ab2c5fbda7890546f31f2fe38daa5edd9
   Author: fanglin.yang <[email protected]>
   Date:   Wed Feb 19 16:41:38 2020 +0000

       modified:   sorc/checkout.sh to check out model tag GFS.v16.0.0, which contains
                   updates of dry mass fixer, WW3 thread reproducibility and post/8.0.5 lib
       modified:   scripts/exglobal_fcst_nemsfv3gfs.sh to add iau_drymassfixer = .true.

   commit 31bb7d32181ca84229c3c3374226bbd37784ddc4
   Merge: eb73e520 0359d342
   Author: Mallory Row <[email protected]>
   Date:   Wed Feb 19 15:24:42 2020 +0000

       Merge branch 'develop' into feature/metplus

   commit e058a9054d7edb2b92ee590b6dede733fe4bc4a3
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 19 15:05:59 2020 +0000

       Changes to config.resources after wave tests

   commit 24844e403745fb5b292fcde0aae53a3c497aa295
   Merge: 0f2f2b0b c2e99795
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 19 14:03:58 2020 +0000

       Sync merge with feature/gfsv16b

   commit 0f2f2b0be1ff97485a23cdaf214d428927290c3d
   Author: kate.friedman <[email protected]>
   Date:   Wed Feb 19 13:36:14 2020 +0000

       Updates to config.wave and scripts/exwave_post_sbs.sh

   commit c2e997959144b2628185b58e5480f25a7cd8852a
   Author: russ.treadon <[email protected]>
   Date:   Wed Feb 19 00:42:49 2020 +0000

       Issue #1:  add backup option to fit2obs, update config files

        * jobs/rocoto/vrfy.sh - set verification date based on VBACKUP_FITS

        * parm/config/config.anal - correct ozinfo typo, enclose realtime settings in REALTIME block

        * parm/config/config.resources - set npe_node_post for WCOSS_DELL_P3, reduce C768 eobs npe_eobs

        * parm/config/config.vrfy - add VBACKUP_FITS

   commit ed160c03ff53e10aa0e3d57ac802e8e6fecd54a3
   Author: fanglin.yang <[email protected]>
   Date:   Tue Feb 18 22:22:10 2020 +0000

       modified:   sorc/checkout.sh to check out gldas release branch gldas_gfsv16_release.v1.0.0

   commit c08ebb8a2aca1061272c05643160aebc2a06eac5
   Author: fanglin.yang <[email protected]>
   Date:   Tue Feb 18 17:22:01 2020 +0000

       modified:   checkout.sh to use
       UPP:       upp_gfsv16_release.v1.0.5
       ufs-util:  release/ops-gfsv16

   commit a6bc7f8ad50a0c7400c17c3d1423e2aefccff2ed
   Author: fanglin.yang <[email protected]>
   Date:   Tue Feb 18 17:12:17 2020 +0000

       modified:   arch.sh to archive gfs_pgrb2b group into HPSS

   commit 958ee38b6fb9c76056a3045f43dec92a503f48c9
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 14 20:38:53 2020 +0000

       Increasing resources for eupd when C384

   commit db5c593f2c34111a13bddaa1f4f59edcd74c2118
   Author: russ.treadon <[email protected]>
   Date:   Fri Feb 14 20:12:00 2020 +0000

       Issue #1:  update modulefiles/module_base.hera to crtm/2.3.0

   commit f662fffa25a99617828e4322bf789978cf523248
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 14 15:57:05 2020 +0000

       Issue #3 - Updated README with new manic tag v1.1.7

   commit 94cd971fb14c4b7204822ca780d6e9dbe945b595
   Author: kate.friedman <[email protected]>
   Date:   Fri Feb 14 15:31:32 2020 +0000

       Updates to wave scripts

   commit 4e006dc33fb68febaa33524dfafaa1f0d3282939
   Merge: fcc5a74a a94a44a8
   Author: fanglin.yang <[email protected]>
   Date:   Fri Feb 14 00:50:00 2020 +0000

       Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

   commit fcc5a74a95d37ef2d7193ec6c0c8e5513a0f3548
   Author: fanglin.yang <[email protected]>
   Date:   Fri Feb 14 00:48:44 2020 +0000

        	modified:   config.fcst to fix a bug

   commit e3196a84a0ecd2b54d59abfdc9184622a9c605ca
   Author: Kate Friedman <[email protected]>
   Date:   Thu Feb 13 15:59:06 2020 -0500

       Update README.md

   commit e46b175d8a309010e421ccd54e6d6eb083af3579
   Merge: 4bd0e203 0359d342
   Author: Kate.Friedman <[email protected]>
   Date:   Thu Feb 13 20:38:04 2020 +0000

       Issue #3 - sync merge with develop branch

   commit aec4c288e1f96ee7f3f2a834014edde0ef4ea9a2
   Author: Kate.Friedman <[email protected]>
   Date:   Thu Feb 13 19:09:56 2020 +0000

       Added EUPD_CYC variable to config.base.emc.dyn

   commit a94a44a82be752f6542b50c8d6ce082f7272dc4c
   Merge: 0f0894bf 0359d342
   Author: russ.treadon <[email protected]>
   Date:   Thu Feb 13 18:59:51 2020 +0000

       Issue #1:  Merge branch 'develop' at 0359d34 into feature/gfsv16b

   commit 0359d3425a8710e7b696b94456ec8e54e9a2fd9f
   Merge: 1d9a1f00 bd00cb98
   Author: Hang-Lei-NOAA <[email protected]>
   Date:   Thu Feb 13 09:53:59 2020 -0500

       Merge pull request #19 from NOAA-EMC/feature/remove_theia

       Feature/remove theia

   commit 0f0894bfcc8a25ea921026d911a38e7b726ce638
   Author: Boi Vuong <[email protected]>
   Date:   Thu Feb 13 14:15:16 2020 +0000

       GitHub Issue #1 removed script  exnawips.sh.ecf (not used)

   commit adabbaf95b32b7292cc0f09447f98773795f2b1e
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Thu Feb 13 00:34:02 2020 +0000

       change netcdf modules

   commit 767b9c33e29aff3470d914edb9289ef8236331ed
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Thu Feb 13 00:32:25 2020 +0000

       remove hardwired libs

   commit be3c324dc1e35f336b1df6f2be8ab335f45f1b9e
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Thu Feb 13 00:31:13 2020 +0000

       Modified modules for parallel_netcdf

   commit 3e3c119d096f5d03082183655d0f5db4e4991951
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Thu Feb 13 00:29:53 2020 +0000

       Added netcdf_parallel modules

   commit 0b25f5b648892a068ac6ae1c30890729576b2c5c
   Author: fanglin.yang <[email protected]>
   Date:   Wed Feb 12 20:28:27 2020 +0000

         Changes to be committed:
        	deleted:    ../driver/product/driver_WAFS.README
        	deleted:    ../scripts/exgfs_grib_wafs.sh.ecf
        	deleted:    mkwfsgbl.sh

   commit 2a2a8d3fe1fcd0bebf07d34c32697f64f5ac745c
   Author: Kate.Friedman <[email protected]>
   Date:   Wed Feb 12 18:00:14 2020 +0000

       Adjusting config.resources for C384

   commit 8bdf2387b1fad22cfa2da37a7428406a847d2362
   Author: Kate.Friedman <[email protected]>
   Date:   Wed Feb 12 17:33:53 2020 +0000

       Reducing npe_eobs from 400 to 100

   commit 648479c086776b0c7b4d24b4052130d48dfaa64a
   Author: russ.treadon <[email protected]>
   Date:   Wed Feb 12 15:56:39 2020 +0000

       Issue #1:  add reservation keyword to rocoto workflow generator for WCOSS_DELL_P3

   commit c48ac6df8c5c166a1ef51b173372f3f26f9d877a
   Author: Kate.Friedman <[email protected]>
   Date:   Wed Feb 12 14:46:26 2020 +0000

       Removing gefs from checkout.sh and link_fv3gfs.sh

   commit fc0b624223baa54315e7ad52f48b689fff29bccb
   Author: fanglin.yang <[email protected]>
   Date:   Wed Feb 12 02:37:36 2020 +0000

       modified:   exglobal_fcst_nemsfv3gfs.sh -- bug fix

   commit 97e34f9728ae3bda52fe636994c91453b5cccfb4
   Author: fanglin.yang <[email protected]>
   Date:   Tue Feb 11 17:47:34 2020 +0000

       removed the following obsolete lines from exglobal_fcst_nemsfv3gfs.sh

       JCAP_STP=${JCAP_STP:-$JCAP_CASE}
       LONB_STP=${LONB_STP:-$LONB_CASE}
       LATB_STP=${LATB_STP:-$LATB_CASE}

   commit 60098fc7238b35f461ec9aa8fabd924fb09372ce
   Author: fanglin.yang <[email protected]>
   Date:   Tue Feb 11 17:34:40 2020 +0000

       1. modified:   parm/config/config.fcst to set lheatstrg=".false." for both NOAH-LSM and NOAH-MP per the decision made
                      by the physics group. More development is required to use the canopy heat storage parameterization.

       2. modified:   scripts/exglobal_fcst_nemsfv3gfs.sh to
                      1) change the default of  lheatstrg to ".false."

                      2) for ensemble forecast, change
                        &nam_stochy
                         ntrunc = $JCAP_STP
                         lon_s = $LONB_STP
                         lat_s = $LATB_STP
                       EOF

                       to
                         &nam_stochy
                         /
                         EOF

                       Phil Pegion noted: "If you are concerned about the ensemble runtime with stochastic physics on,
                           I recommend removing ntrunc, lat_s, and lon_s from the namelist.  I have fixed the bug that
                           forced the spectral resolution of the random patterns to be related to the number of mpi tasks.
                           Now the code calculates the appropriate truncation for a given length scale.
                           It probably won't save a lot of time, but it is worth it. Scientifically, the patterns are the same.

   commit ababd08e676f45524ec616e60a0290c26d3b1795
   Author: Boi Vuong <[email protected]>
   Date:   Tue Feb 11 16:28:12 2020 +0000

       Updated data card grib2_awpgfs102.003

   commit eef10607bedf12153580d85d5a7952ea90c8b198
   Author: fanglin.yang <[email protected]>
   Date:   Tue Feb 11 16:14:29 2020 +0000

       resort back to older w3emc lib since w3emc_para does not support mersenne_twister
        	modified:   modulefiles/gfs_bufr.hera
        	modified:   modulefiles/gfs_bufr.wcoss_dell_p3

   commit 8fe97ac689aebb2243b6e69cbf7015e636d68852
   Author: fanglin.yang <[email protected]>
   Date:   Tue Feb 11 15:45:33 2020 +0000

       	modified:   modulefiles/gfs_bufr.hera and   modulefiles/gfs_bufr.wcoss_dell_p3 to load paralel netcdf modules

   commit 78a7294eb1937758fa81f72cc5045d3d680a07c6
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 19:29:15 2020 +0000

       Fixed missing fi in checkout.sh

   commit 15628bda0621187949204d0d9af4d901e205495d
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 19:21:39 2020 +0000

       Change fv3gfs checkout to develop branch of ufs-weather-model

   commit 631820beca07522faedccc47d7415c4b6b250273
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 19:08:30 2020 +0000

       Changing checkout.sh to Henrique's fork branch gfsv16_wave

   commit cc742b672af73931999bddf115bc32f07ed69f87
   Merge: ba63c4f8 1d9a1f00
   Author: russ.treadon <[email protected]>
   Date:   Mon Feb 10 17:19:58 2020 +0000

       Issue #1:  Merge branch 'develop' at commit:1d9a1f0 into feature/gfsv16b

   commit a518485866536102312c477926ae42a59d5e561e
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 17:02:22 2020 +0000

       Changing fv3gfs.fd checkout back to gfsv16_updates

   commit c75d35b6802592b17640fecace38d9103a14b1bc
   Merge: 2a46ee2e ba63c4f8
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 16:44:53 2020 +0000

       Sync merge with feature/gfsv16b

   commit 2a46ee2ee71da5c75d11cbc96b048a1e34148239
   Author: kate.friedman <[email protected]>
   Date:   Mon Feb 10 15:42:35 2020 +0000

       Updates for wave and fcst scripts, as well as config.wave

   commit ba63c4f83955bfc38bc3f2fbd9f8c6447630a803
   Merge: fc2144e6 75a9fb5d
   Author: Fanglin Yang <[email protected]>
   Date:   Sat Feb 8 20:35:14 2020 -0500

       Merge pull request #17 from NOAA-EMC/feature/gfsv16b_paranetcdf

       Feature/gfsv16b paranetcdf

   commit 75a9fb5d4dd6d4ef91bdee93769031465ddd57e9
   Merge: a2932c5b 6f256b4f
   Author: fanglin.yang <[email protected]>
   Date:   Sun Feb 9 01:22:29 2020 +0000

       Merge branch 'feature/gfsv16b_paranetcdf' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_paranetcdf

   commit a2932c5be934fb45416c92caa01f0fa3df4829d1
   Author: fanglin.yang <[email protected]>
   Date:   Sun Feb 9 01:21:52 2020 +0000

        	modified:   parm/config/config.base.emc.dyn
        	modified:   parm/config/config.base.nco.static

   commit 6f256b4f7aadb9913cd78962e19dcabcf7ba49e4
   Author: [email protected] <[email protected]>
   Date:   Fri Feb 7 20:07:24 2020 +0000

       Added namelist option 'cld_amt' to enkf_chgres_recenter_ncio. Default is .false., when .true. will attempt to read in cld_amt and print error (but continue) if it is missing from input file

   commit eb0681751af6b850e99c880c11343af10000d54d
   Author: fanglin.yang <[email protected]>
   Date:   Fri Feb 7 16:20:43 2020 +0000

        	modified:   sorc/checkout.sh update ufs_util repo

   commit b9feca17a5e566d75995049ba8e1497eb205b96d
   Author: fanglin.yang <[email protected]>
   Date:   Fri Feb 7 15:03:52 2020 +0000

        	modified:   ../../modulefiles/module_base.hera
        	modified:   config.anal        control ABI and AHI data usage
        	modified:   config.resources   updates based on pull reviews
        	modified:   ../../sorc/gaussian_sfcanl.fd/makefile.sh  use parallel netcdf

   commit eb73e520716215c3f11cc4cdfce3831408221766
   Author: Mallory Row <[email protected]>
   Date:   Fri Feb 7 14:04:37 2020 +0000

       Update EMC_verif-global checkout to verif_global_v1.5.0

   commit bd00cb9812c5fb400ba4399d183b2198b8e80372
   Author: Kate.Friedman <[email protected]>
   Date:   Fri Feb 7 13:41:05 2020 +0000

       Issue #4 - bug fix in getic.sh for v15

   commit 1c85197d7a1beb34f2e3a52969d631d42003e6eb
   Merge: 67dae409 1d9a1f00
   Author: Kate.Friedman <[email protected]>
   Date:   Fri Feb 7 13:27:18 2020 +0000

       Issue # 4 - Sync merge branch 'develop' into feature/remove_theia

   commit 1d9a1f00b73cb3852d352e9a41a15651a99fb656
   Merge: 3ed9267b bdbecaa7
   Author: Kate Friedman <[email protected]>
   Date:   Fri Feb 7 08:11:21 2020 -0500

       Merge pull request #18 from lgannoaa/exception_handling

       Exception handling

   commit 85deaf78b86184f9b52afe5d68b370ba640c152b
   Author: kate.friedman <[email protected]>
   Date:   Thu Feb 6 19:16:18 2020 +0000

       Updated resource configs based on C384 and C768 tests

   commit 4bd0e20300cc2a79e79433b2ec8cdb15c8f01c9e
   Author: Kate Friedman <[email protected]>
   Date:   Thu Feb 6 11:55:31 2020 -0500

       Update README.md

   commit d9ea1acab54f65a987b32d56587dfd1b6bcd037c
   Author: Kate.Friedman <[email protected]>
   Date:   Thu Feb 6 16:03:11 2020 +0000

       Issue #3 - reduce hashes down to minimum 8 characters

   commit 92d07793ce4be5ac1e12aedb536ace89ec6fcc7b
   Author: fanglin.yang <[email protected]>
   Date:   Thu Feb 6 15:28:15 2020 +0000

       Update to use parallel netcdf libs
        	modified:   modulefiles/fv3gfs/enkf_chgres_recenter.wcoss_dell_p3
        	modified:   modulefiles/fv3gfs/enkf_chgres_recenter_nc.hera
        	modified:   modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss_dell_p3
        	modified:   modulefiles/fv3gfs/gaussian_sfcanl.hera
        	modified:   modulefiles/fv3gfs/gaussian_sfcanl.wcoss_dell_p3

   commit a6a28943d08089d96dcf3ea7953ffaf9877e3caa
   Author: fanglin.yang <[email protected]>
   Date:   Thu Feb 6 15:10:40 2020 +0000

       Point new UPP tag upp_gfsv16_release.v1.0.2, for upgrading with netcdf_parallel 4.7.4, hdf_parallel 1.10.6 and
       w3emc_para 2.4.0 on Dell and Hera

   commit cf1c0a5cfec92cebaf648a09f42da435750154b6
   Author: russ.treadon <[email protected]>
   Date:   Thu Feb 6 13:43:17 2020 +0000

       Issue #16:  Update EMC_verif-global to tag verif_global_v1.5.0

   commit 41ca86bc4001549b98d6b6594288c9752215a1f3
   Author: fanglin.yang <[email protected]>
   Date:   Thu Feb 6 04:19:11 2020 +0000

        	modified:   parm/config/config.base.emc.dyn to point new obsproc_prep to spupport parallel netcdf

   commit 61b72ba02f920b4817ee199d9cae685e2e3c2234
   Author: fanglin.yang <[email protected]>
   Date:   Thu Feb 6 01:10:06 2020 +0000

        	modified:   config.resources

   commit 17bcdf2a1e0e8f1febfc6d57994a12ac625d9d75
   Author: kate.friedman <[email protected]>
   Date:   Tue Feb 4 19:11:42 2020 +0000

       Wave changes for running with IAU on

   commit 3c0ebdde3307741f88e6ecef4f59faaf5efdd5ad
   Author: fanglin.yang <[email protected]>
   Date:   Tue Feb 4 17:11:56 2020 +0000

        	modified:   modulefiles/module_base.hera and   modulefiles/module_base.wcoss_dell_p3 to point to parallel versions of netCDF libs and esmf lib
        	modified:   parm/config/config.efcs and  parm/config/config.fcst to set chunksizes correctly for high-res and enkf forecasts

   commit f89bafe55aa0b15ae306dbaff8d97cbd17dc27c5
   Author: russ.treadon <[email protected]>
   Date:   Mon Feb 3 14:09:33 2020 +0000

       Issue #16:  update DA checkout to feature/parallel_ncio

   commit bad2fc1a43a4df12f3f57c4da9e7612402885cd4
   Author: fanglin.yang <[email protected]>
   Date:   Mon Feb 3 05:01:43 2020 +0000

        	modified:   parm/config/config.fcst
        	modified:   parm/config/config.fv3

   commit 183aac6be0ff71d8368ee139695aeca7caf72464
   Author: fanglin.yang <[email protected]>
   Date:   Mon Feb 3 04:10:36 2020 +0000

       Modified config.resources to use npe_node_max to define computing resouces. Pull over new settings found in
       the config files of in v16rt2.  Made ertain adjustment and cleaned up certain parameters in a few scripts to
       remove redundance.

        	modified:   parm/config/config.anal
        	modified:   parm/config/config.base.emc.dyn
        	modified:   parm/config/config.efcs
        	modified:   parm/config/config.eobs
        	modified:   parm/config/config.eupd
        	modified:   parm/config/config.fcst
        	modified:   parm/config/config.fv3
        	modified:   parm/config/config.gldas
        	modified:   parm/config/config.post
        	modified:   parm/config/config.resources

   commit 9d5e0a0348ae7b825629bc4c601b8ee8e726418d
   Author: fanglin.yang <[email protected]>
   Date:   Sun Feb 2 19:04:59 2020 +0000

       Github Issue #16

       1. add options to workflow scripts to use parallel netcdf for I/O.
          The application varies with model resolution and computing platform.
          See config.fcst and exglobal_fcst_nemsfv3gfs.sh for the settings.

       2. Update UPP to upp_gfsv16_release.v1.0.1

        	modified:   modulefiles/module_base.hera
        	modified:   modulefiles/module_base.wcoss_dell_p3
        	modified:   parm/config/config.fcst
        	modified:   scripts/exglobal_fcst_nemsfv3gfs.sh
        	modified:   sorc/checkout.sh
        	deleted:    parm/config/config.resources.C96

   commit 3a66788620477dd3159fe9633a860c799f421eee
   Author: fanglin.yang <[email protected]>
   Date:   Sun Feb 2 05:17:40 2020 +0000

       The following files are no longer used
        	deleted:    README.iau
        	deleted:    config.anal.iau
        	deleted:    config.base.emc.dyn.iau
        	deleted:    config.efcs.iau
        	deleted:    config.eobs.iau
        	deleted:    config.eupd.iau
        	deleted:    config.vrfy.iau

   commit fc2144e64bedc1f7fc7bd302e42baa94bfe06e7f
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 31 16:09:00 2020 +0000

       issue #15 Remove station height adjustment

   commit 72cb96233fb636b83ca9f339e23955629c97b82d
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 31 16:08:20 2020 +0000

       issue #15 Porting bufrsnd to Hera

   commit 0799ecd1922652d3d17e88dae62fea1c6d8a96e3
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 31 16:08:02 2020 +0000

       issue #15 Porting bufrsnd to Hera and remove height adjustment

   commit a0ac43a8f1541ae47f156442a303689e5d74a9ec
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 31 16:07:34 2020 +0000

       issue #15 Porting bufrsnd to Hera and remove height adjustment

   commit 85dc2f2486f841e7ad4785e5170c2edd2fbba35e
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 31 16:04:28 2020 +0000

       issue #15 Porting bufrsnd to Hera

   commit 26d52df758693bde55b047bfb874df4439c6d57a
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 31 16:03:20 2020 +0000

       issue #15 Modofy driver for test runs

   commit 0e34bc5f4d38d742a11e3275ee560708c417c37f
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 31 14:53:37 2020 +0000

       port v16b bufrsnf to Hera

   commit 87d3d18c291af5543de72e38e8dfe310223e1e1e
   Author: fanglin.yang <[email protected]>
   Date:   Fri Jan 31 03:53:20 2020 +0000

       modified parm/config/config.resources to apply more tasks to gldas aprun_gaussian

   commit 50b70215096dbc87e0484ed0eea9572238c37432
   Author: kate.friedman <[email protected]>
   Date:   Thu Jan 30 14:55:48 2020 +0000

       Resource adjustments and fix for restart copying in exglobal

   commit bdbecaa7220f2462cc75e802570845809ebcfc75
   Author: Lin.Gan <[email protected]>
   Date:   Wed Jan 29 15:15:52 2020 +0000

       Display exception handling message for individual package with location of the log file

   commit 85b254d8e65318adaeef87ae7187218de59f94c5
   Author: Henrique Alves <[email protected]>
   Date:   Tue Jan 28 21:18:35 2020 +0000

       Adjusting resources for wave component

   commit 3f858be34da7134a071762376f4c4e69ea73f4a0
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 20:43:02 2020 +0000

       Further adjustment to config.efcs for restart_interval for cold start SDATE

   commit a674d30c8fe1da53c2d8bda5b695a474e8906f6b
   Merge: 9944f2fe 3fda3e35
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 20:26:10 2020 +0000

       Merge branch 'feature/wave2global' of https://github.com/NOAA-EMC/global-workflow into feature/wave2global

   commit 9944f2fe15576f0b401996fefe3c910888708e0d
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 20:25:59 2020 +0000

       Resource adjustments for C384, restart_interval adjustment for cold start, and fcst dependency update

   commit b64fd5ff43f88bd5f2d27b0a16fb803eac8aff8c
   Merge: cf008631 3ed9267b
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 15:24:37 2020 +0000

       Merge branch 'develop' into feature/manage_externals

   commit cf0086311daaf62ee33df010946d0a0ddc5bc400
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 15:23:14 2020 +0000

       Issue #3 - remove copy of manage_externals under util and add README.md file

   commit 3fda3e359f66611c77a97ca9c30a6204a36077c3
   Author: Henrique Alves <[email protected]>
   Date:   Tue Jan 28 14:18:47 2020 +0000

       Adjusting output stride on station outputs, adding bulletin output to wavepostsbs using unified wave_outp_spec.sh (removing wave_outp_bull.sh), adjusting wave resources in config.fv3

   commit e4bd7d09ef3cc06d14dbfcb07bd3f211d4a5e54c
   Merge: 99b19f18 b3d88593
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 13:58:16 2020 +0000

       Sync merge with feature/gfsv16b

   commit 99b19f18e0a01fcf49b442ec66f1aea43b16433c
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 28 13:54:46 2020 +0000

       Disabling additional wave jobs for later implementation

   commit c12e87987113fa6f4b543bc0dae61d4259703c03
   Author: Lin.Gan <[email protected]>
   Date:   Mon Jan 27 19:38:19 2020 +0000

       Implement exception handling in build_all script

   commit bfc7bb0b237d4cf4240551aa8b9c5d025724ac16
   Author: Kate.Friedman <[email protected]>
   Date:   Mon Jan 27 19:06:17 2020 +0000

       Issue #3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds.

   commit b3d885930adfc07c67bc8fbe146533868f96aba8
   Author: russ.treadon <[email protected]>
   Date:   Mon Jan 27 17:54:31 2020 +0000

       Issue #1:  update gldas workflow dependency to improve parallel throughput

   commit e216205aec6f481b4e96c8707d485dd2eacfb0e7
   Author: Henrique Alves <[email protected]>
   Date:   Mon Jan 27 00:01:14 2020 +0000

       Updating resource config in config.fv3 for running cplwav in c384 with ppn=7,thrd=4; checkout.sh now points to the latest ufs-weather-model develop branch; updated fv3gfs_build.cfg to match ufs-weather-model

   commit 4db98e694624b62e45417b3bb6c7c771f633cb42
   Author: russ.treadon <[email protected]>
   Date:   Fri Jan 24 17:18:14 2020 +0000

       Issue #1 - update EMC_verif-global checkout to tag verif_global_v1.4.1

   commit 4d5713d3983c6cc6a8e497e892760752e09f15a0
   Author: Lin.Gan <[email protected]>
   Date:   Fri Jan 24 15:51:28 2020 +0000

       Testing github commit

   commit 786806f3cd5d858615f3f74dec78891a2189ee79
   Author: Mallory Row <[email protected]>
   Date:   Fri Jan 24 15:04:16 2020 +0000

       Missed file format updates in a few places in config.metp

   commit 7d0f783a41d8f1c50e9251b54884410e0bb7ad1a
   Author: russ.treadon <[email protected]>
   Date:   Fri Jan 24 14:41:02 2020 +0000

       Issue #1 - GFS v16 updates for MOS, checkout, and archive

        * scripts/run_gfsmos_master.sh.dell - update MOS script to point at MDL gfsmos
        * sorc/checkout.sh - check out new fv3gfs branch and UPP tag
        * ush/hpssarch_gen.sh - add loginc to gdas and gfs tarballs

   commit d0a3b53c8117676c351c50287d4583951c94d42c
   Author: Lin.Gan <[email protected]>
   Date:   Fri Jan 24 14:30:29 2020 +0000

       init commit for exception handling branch

   commit c11dfef0f7fb8da2866e6a022ac0ff60044766a7
   Author: Mallory Row <[email protected]>
   Date:   Fri Jan 24 14:07:29 2020 +0000

       Update EMC_verif-global tag to verif_global_v1.4.1

   commit df2e6b0bd9a2af2107a78c12f9c648a61fe0d5b9
   Merge: bc07de02 09e68b48
   Author: kate.friedman <[email protected]>
   Date:   Thu Jan 23 20:00:34 2020 +0000

       Sync merge with feature/gfsv16b

   commit bc07de02af5743194cb9203d0d36e62e9a25b223
   Author: kate.friedman <[email protected]>
   Date:   Thu Jan 23 19:43:12 2020 +0000

       Fixed wavepostsbs dependencies

   commit 4b54c37b425c947e79c4ddc192a6e2f06b8528fa
   Author: kate.friedman <[email protected]>
   Date:   Thu Jan 23 15:04:20 2020 +0000

       Turn off cplwav in efcs config and adjusted dependencies for fcst job

   commit 0ea809c208ce606c957eed4d346a3828d8186010
   Author: Mallory Row <[email protected]>
   Date:   Thu Jan 23 13:29:56 2020 +0000

       Update file format variable in config.metp of online archive files

   commit b886c848a60871a86bb0b45d024a34368ad1d898
   Author: kate.friedman <[email protected]>
   Date:   Wed Jan 22 21:01:34 2020 +0000

       Change to base config and update to wave dependencies

   commit 154b118a7808bfa60abe0620e4bee21cb4faabee
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 22 03:37:24 2020 +0000

       Changing WAV_MOD_ID to MDC (model component) tag; updating some paths for wave components in several scripts. Correcting wave_tar bug.

   commit 0edcb211586f1f96d01f172215568fa7eee3a7a2
   Author: Henrique Alves <[email protected]>
   Date:   Tue Jan 21 20:15:14 2020 +0000

       Several changes to change the sirectory name from  to  etc. Updates to wavepostsbs.

   commit c0d7179f34837e40db9ccb1b941ad9f312283a6e
   Author: Mallory Row <[email protected]>
   Date:   Tue Jan 21 16:37:16 2020 +0000

       Add updated env machine files for gfsmetp

   commit 82e690717d72c7b021c637270108f4bacfb6816d
   Author: Mallory Row <[email protected]>
   Date:   Tue Jan 21 16:29:23 2020 +0000

       Update config.resources for gfsmetp

   commit 72e8adf1c8a8859786cbbcf1b976640d73c5c867
   Author: Mallory Row <[email protected]>
   Date:   Tue Jan 21 16:19:31 2020 +0000

       Update EMC_verif-global tag checkout to 1.4.0

   commit 6872f79f3f9052377ff863da1bbac482548ee0ce
   Author: Mallory Row <[email protected]>
   Date:   Tue Jan 21 16:14:25 2020 +0000

       Add rocoto METplus job script

   commit 9c94156670bd810561bd2a699648afb946511ea9
   Author: Mallory Row <[email protected]>
   Date:   Tue Jan 21 16:09:13 2020 +0000

       Changes to setup_workflow.py for gfsmetp metatask

   commit 09e68b4834b0b54552ef0ae3829a41063200fe5f
   Merge: a49e4e54 3ed9267b
   Author: russ.treadon <[email protected]>
   Date:   Mon Jan 20 22:05:53 2020 +0000

       GitHub Issue #1

       Merge branch 'develop' at revision 3ed9267 into feature/gfsv16b

   commit 0ad851882686087fdd21a4a8f88b65dd3960cd1c
   Author: kate.friedman <[email protected]>
   Date:   Fri Jan 17 17:29:09 2020 +0000

       ACCOUNT fix in config.base.emc.dyn and dependency fix to setup_workflow.py

   commit 80f13fb4b785fbde8e925cfb6deb547297f34e70
   Author: Henrique Alves <[email protected]>
   Date:   Fri Jan 17 03:29:35 2020 +0000

       Removing underscore from COM wave directory names

   commit 39a9df9385631df4a3cba4e6663fc6ab5c3f238d
   Author: Henrique Alves <[email protected]>
   Date:   Fri Jan 17 03:08:41 2020 +0000

       Changing back waveprep to include ice and currents by default

   commit c36df4d748bbc2a8dc7b4a044a1f62f637e3ba33
   Author: Henrique Alves <[email protected]>
   Date:   Thu Jan 16 19:43:26 2020 +0000

       Updating post sbs script to copy station files to correct directory.

   commit a49e4e5403b1e16025b2a5890cef3de22627119a
   Author: Boi Vuong <[email protected]>
   Date:   Thu Jan 16 14:59:08 2020 +0000

       Added build script for gfs_util

   commit f1cd7ab43d24fc576c82ea227cd7d79cc08f4835
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 20:48:11 2020 +0000

       Adding block sourcing config files into wave j-jobs

   commit b736f8315497bfc29fd77faa9d98bf558ddea919
   Author: kate.friedman <[email protected]>
   Date:   Wed Jan 15 20:40:16 2020 +0000

       Removed config sourcing from rocoto job scripts

   commit 4f6840b25d85152ea7393a8959619bb4caab9d67
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 20:38:41 2020 +0000

       Removing dependency on log file for wave post sbs

   commit 429c409799f1999babbfb3653e6f03be66f8fec3
   Merge: 3f685fd3 a6905174
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 20:35:24 2020 +0000

       Merge branch 'feature/wave2global' of github.com:NOAA-EMC/global-workflow into feature/wave2global

   commit 3f685fd3423add0ba2cfb7c3115a674891c44e55
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 20:29:58 2020 +0000

       Reinstating Ratkos NO NO in build_fv3.sh

   commit 8f48844906f851a41db742f7686f7e7cae6b95c0
   Merge: 5eeaffa1 7c595189
   Author: BoiVuong-NOAA <[email protected]>
   Date:   Wed Jan 15 20:12:52 2020 +0000

       Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

   commit a69051742c5edd0e4d34d178329fc24cacede78a
   Author: kate.friedman <[email protected]>
   Date:   Wed Jan 15 20:12:20 2020 +0000

       Adding supplemental config source to JGLOBAL_FORECAST for wave

   commit 5eeaffa1c3f4e35fe067b7e229f16f93574bcb86
   Author: BoiVuong-NOAA <[email protected]>
   Date:   Wed Jan 15 20:12:08 2020 +0000

       Updated GFS drivers

   commit 7c595189e8c671a7b2eb6363d82020fb9ed58c13
   Author: Boi Vuong <[email protected]>
   Date:   Wed Jan 15 20:09:54 2020 +0000

       Github Issue #1 updated JGFS_PGRB2_SPEC_GEMPAK

   commit 1f5c593705df384608b1f1dd84df9114d5d8a812
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 19:59:27 2020 +0000

       Removing KEEPDATA from JWAVE_POST_SBS

   commit 5d2f2a21947dfb00762b1085fd267ca959b7fea6
   Author: Boi Vuong <[email protected]>
   Date:   Wed Jan 15 19:50:00 2020 +0000

       Github Issue #1 modified rocoto gempak.sh

   commit baa06afcecef64faad51bfac3b4fd2c064df3fb5
   Author: Henrique Alves <[email protected]>
   Date:   Wed Jan 15 19:32:06 2020 +0000

       Changes to update sbs post and reconciling parameters for output post data.

   commit 8d430ceeac22bb8943bdf2052b85cccc9b621440
   Author: BoiVuong-NOAA <[email protected]>
   Date:   Wed Jan 15 16:28:13 2020 +0000

       GitHub Issue #1 Updated ush,gempak,jobs and docs

   commit 53f719f63f569bd061bd3cfd3b63d5040a962dea
   Author: BoiVuong-NOAA <[email protected]>
   Date:   Wed Jan 15 14:19:46 2020 +0000

       GitHub Issues #1 Bugzilla ticket 889 fixed bug in rdbfmsua.f

   commit 8b94a2d6caad3bc5eebfe69bffc5224bebd1856a
   Author: BoiVuong-NOAA <[email protected]>
   Date:   Wed Jan 15 14:15:16 2020 +0000

       GitHub Issues #1 Updated some gfs driver

   commit ed2317a953992974dc2e61517cfe3d22d3c2d75f
   Author: BoiVuong-NOAA <[email protected]>
   Date:   Wed Jan 15 05:10:51 2020 +0000

       Updated GFS driver

   commit 3ed9267b2f540694e957ee33a746f00857a5a1a2
   Author: kate.friedman <[email protected]>
   Date:   Tue Jan 14 19:32:36 2020 +0000

       Issue #10 - mid-year update to bufr station list (develop)

   commit f59fc0c4550a5e8617fb70ca150e91a65de89e18
   Author: BoiVuong-NOAA <[email protected]>
   Date:   Mon Jan 13 20:03:34 2020 +0000

       GitHub Issue#1 Revert parm card for AWIPS grid 211

   commit 21feab285859881814509d75c794bc4ae4f74a3b
   Author: BoiVuong-NOAA <[email protected]>
   Date:   Fri Jan 10 22:00:38 2020 +0000

       GitHub Issue #1 Updated AWIPS grid 211

   commit e292d96010dc1e63f28d2c9d95c5e61776abe0dd
   Author: BoiVuong-NOAA <[email protected]>
   Date:   Fri Jan 10 21:12:36 2020 +0000

       GitHub Issue Updated AWIPS parm card grid#211

   commit fcf2d09159f80142364fad616661014e434b2a89
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 10 20:55:57 2020 +0000

       modify gfs_bufr.sh for generalization

   commit 528cde1998fa6b341794f4ad15820e8cbc517568
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 10 20:55:05 2020 +0000

       modify exgfs_postsnd.sh.ecf

   commit 0b5a056b7c089e428806ceecb36ae0ddd0535060
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 10 20:40:21 2020 +0000

       Addd 25 bufr stations and all station j,i

   commit 349c299740b5e1d022faa2d17aa6aa05ed8d7165
   Author: Guang.Ping.Lou <[email protected]>
   Date:   Fri Jan 10 20:36:57 2020 +0000

       add module nemsio/…
KateFriedman-NOAA pushed a commit that referenced this issue Sep 3, 2020
@JessicaMeixner-NOAA
Merge pull request #3 from KateFriedman-NOAA/feature/gfsv16b-wave
485632e 
Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py
jkhender added a commit to jkhender/global-workflow that referenced this issue Sep 17, 2020
@jkhender
merged with 15Sep20 feature/gfsv16b branch, ce1c782
81af359 
Squashed commit of the following:

commit ce1c78255f4bf8f40c2f116547062c7f1b3832c5
Author: russ.treadon <[email protected]>
Date:   Tue Sep 15 10:25:37 2020 +0000

    Issue #1:  add fhrgrp and fhrlst back to gfsawips in setup_workflow.py (bugfix)

commit 67b33dd15633345e0fd59dd37728c26b36d4c0b3
Merge: c33869da 586fe6ce
Author: Kate Friedman <[email protected]>
Date:   Mon Sep 14 10:34:39 2020 -0400

    Merge pull request #130 from JessicaMeixner-NOAA/bugfix/rtofs

    Bugfix for rtofs

commit 586fe6ce19c5fc281dec16be3347d0311f3e99ce
Author: Jessica.Meixner <[email protected]>
Date:   Mon Sep 14 14:29:01 2020 +0000

    adding the line to go back a day for RTOFS for the if not NCO
    section because RTOFS will not be available until 06 cycle

commit c33869dab2704396ea6e569dcd202a2b9866827a
Author: fanglin.yang <[email protected]>
Date:   Mon Sep 14 02:34:08 2020 +0000

    deleted  relocate_mv_nvortex.fd since storm relocation is no longer needed.
    modified build_tropcy_NEMS.sh to remove references to relocate_mv_nvortex

commit 4320bf9fd55757df79b63ed15c2041b1acd0e604
Author: russ.treadon <[email protected]>
Date:   Sat Sep 12 00:05:38 2020 +0000

    Issue #1:  correct DA typos in sorc/link_fv3gfs.sh

commit 674cd841a7be3a2a9c772cd455ab980195ea9fcc
Merge: 46c2404e ad1a9d90
Author: Kate Friedman <[email protected]>
Date:   Fri Sep 11 15:06:36 2020 -0400

    Merge pull request #124 from JessicaMeixner-NOAA/feature/gfsv16b-wave

    Splitting post jobs for waves

commit ad1a9d9044e89b75ec82bb201e35005552d3d177
Merge: 986f8f0b fd687727
Author: Jessica Meixner <[email protected]>
Date:   Fri Sep 11 14:01:35 2020 -0400

    Merge pull request #4 from KateFriedman-NOAA/feature/gfsv16b-splitwavepost

    Sync with feature/gfsv16b and small updates to split wave post changes

commit fd687727b2df80f81fabc41b94f808b74e68783c
Merge: 986f8f0b fc60e895
Author: kate.friedman <[email protected]>
Date:   Fri Sep 11 17:52:30 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-splitwavepost

commit fc60e895dea1c123a4b8e02b50df0d0cfa43f77f
Author: kate.friedman <[email protected]>
Date:   Fri Sep 11 17:45:03 2020 +0000

    Increase walltime for new wavepost jobs

commit e0dd1097de2c335400a546137569886a838c46ba
Merge: 0844b004 46c2404e
Author: kate.friedman <[email protected]>
Date:   Fri Sep 11 14:20:15 2020 +0000

    Merge branch 'feature/gfsv16b' into feature/gfsv16b-wave

commit 46c2404eba485d08e381ef81ebd5ac10c5ad605f
Merge: c5546570 9d9b79c9
Author: Kate Friedman <[email protected]>
Date:   Fri Sep 11 10:15:49 2020 -0400

    Merge pull request #128 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen

    Feature/gfsv16 wave prdgen

commit c554657023d82ac934b481593e55406c45157932
Author: russ.treadon <[email protected]>
Date:   Fri Sep 11 13:59:51 2020 +0000

    Issue #1:  update name of DA jobs and scripts in accordance with WCOSS Implementation Standards

commit 9d9b79c911add71065b0999821772d026609ad62
Merge: cb78f7b8 d3946f90
Author: wx21rph <[email protected]>
Date:   Fri Sep 11 13:48:19 2020 +0000

    Issue #94 solving a conflict

commit cb78f7b839a7b5fd5082f39592e3b450ce059e82
Author: wx21rph <[email protected]>
Date:   Fri Sep 11 13:21:41 2020 +0000

    Issue #94 add waves-prdgen, ICE->ICEC, Sleep in gempak script

commit d3946f9006f433e0a6b2f459aeaa7fd8bf800aff
Author: russ.treadon <[email protected]>
Date:   Tue Sep 8 14:46:39 2020 +0000

    Issue #1:  clean up DA sections of link_fv3gfs.sh

commit 986f8f0b9858f61d32d337a67efa966a7948aa94
Author: jessica.meixner <[email protected]>
Date:   Fri Sep 4 15:42:25 2020 +0000

    fix from Bhavani for having first wave grib file be set
    as a forecast instead of analysis

commit 0844b0043c937925c5ad76b4fad03308483d49b3
Author: jessica.meixner <[email protected]>
Date:   Fri Sep 4 15:42:25 2020 +0000

    fix from Bhavani for having first wave grib file be set
    as a forecast instead of analysis

commit 64409b1e9e976b75afd8a3548e7023dce534c4ae
Author: kate.friedman <[email protected]>
Date:   Thu Sep 3 15:42:23 2020 +0000

    Adding missing space to if-block in env files to resolve runtime failure

commit 0485442f5876b82de73c47429d3a70f58f0aa263
Merge: 26c84b3c 2006bbcb
Author: kate.friedman <[email protected]>
Date:   Thu Sep 3 15:37:50 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-wave

    * upstream/feature/gfsv16b-wave:
      adding pnt jobs as seperate jobs for env
      moving definitions of wavempexec and wave_mpmd from jobs to env
      lowering the resource requirement for wave prep job
      update module for cdo
      updates to resources for wave jobs
      Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py
      cleaning up wave point post scripts
      rename wave post script
      remove gridded so can rename
      updates to boundary point
      Remove extra space from line
      Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes
      fix typos
      updating WCOSS work around for CDO, CDO_ROOT is missing from module file
      adding module use for cdo module on wcoss dell
      updates for new weights file and adding cdo module for wave prep
      Adding new wavepostbndpnt and wavepostpnt jobs
      updating wave post scripts for restructured format
      updates to JJOBs for wave post point for new structure
      changing exit 0 to exit number for FATAL errors in ice prep for waves
      updating error message and exit if there is no current input file
      update WAVE_PREP so that currents do not check for previous 24 hour so that parallels will be reproducible also deleted unused variable
      renaming wave job and scripts
      update jobs for waves
      Issue #94 - pull in two fixes for wave job setup in free-forecast mode
      updates for wave scripts to split them, also added updates from GEFS branch to add extra error checking
      updates from gefs post workflow: updates for re-run case as well as extra error messages

commit 26c84b3ca81dec965ab31d00409b537f61174dc1
Author: russ.treadon <[email protected]>
Date:   Thu Sep 3 14:06:29 2020 +0000

    Issue #1:  remove pgrb2b.0p25 dependency from gfsawips in setup_workflow.py

commit 609e157c2477b662b55bbf3d53999cdd30856bc8
Author: kate.friedman <[email protected]>
Date:   Wed Sep 2 20:35:28 2020 +0000

    Issue #1 - update WAFS tag to gfs_wafs.v6.0.4 and remove HOURLY variable from WAFS configs

commit b0bebad6258bd81c0b0c89b559a04d9b059c838e
Author: kate.friedman <[email protected]>
Date:   Wed Sep 2 20:08:01 2020 +0000

    Issue #1 - change wavegempak and waveawipsgridded dependency to match waveawipsbulls and start when wavepostsbs is complete

commit 084c89e3d562f8c9977eaa17624646be388f7854
Author: russ.treadon <[email protected]>
Date:   Wed Sep 2 19:58:37 2020 +0000

    Issue #1:  set n_sponge=42 in gfs section of config.fcst

commit 2006bbcb1e54e3cd5ae0ff2826b6d0b211c1d013
Author: Jessica.Meixner <[email protected]>
Date:   Wed Sep 2 19:22:38 2020 +0000

    adding pnt jobs as seperate jobs for env

commit c61cd59488b64ead77e13b2eb5faeb383d052ea0
Author: Jessica.Meixner <[email protected]>
Date:   Wed Sep 2 19:02:21 2020 +0000

    moving definitions of wavempexec and wave_mpmd from jobs to env

commit 68ed2d670ebe25713554f2165a0bbc7c35fb5030
Merge: 4e7975d2 70abda26
Author: jessica.meixner <[email protected]>
Date:   Wed Sep 2 17:45:26 2020 +0000

    Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave

    Conflicts:
    	parm/config/config.resources
    	ush/rocoto/setup_workflow.py
    	ush/rocoto/setup_workflow_fcstonly.py

commit 70abda260dc9ab47533d25cd570dd055c4644123
Merge: 0a31d568 52e987ac
Author: Kate Friedman <[email protected]>
Date:   Wed Sep 2 10:28:22 2020 -0400

    Merge pull request #122 from KateFriedman-NOAA/feature/gfsv16b_wavedown

    Add downstream wave jobs to GFSv16

commit 0a31d568bdacd0fb2d8bc6e1fddb09d2c72d014c
Author: kate.friedman <[email protected]>
Date:   Wed Sep 2 14:09:57 2020 +0000

    Remove unneeded settings from config.post

commit 52e987ac67477932e5b034321cf52f1cc756081c
Author: kate.friedman <[email protected]>
Date:   Wed Sep 2 13:05:42 2020 +0000

    Added null DBNROOT to wave awips configs

commit b3c7b7379a6ebb53b4d4533b894b1bf36df3c2fd
Merge: 074f2782 add6ea0b
Author: kate.friedman <[email protected]>
Date:   Wed Sep 2 13:02:41 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b_wavedown

commit 4e7975d265857e4e634e0c7352f6ed2de1a99336
Author: jessica.meixner <[email protected]>
Date:   Tue Sep 1 22:45:05 2020 +0000

    lowering the resource requirement for wave prep job

commit add6ea0bae2c56bba2e3d76460771095b98786b1
Author: russ.treadon <[email protected]>
Date:   Tue Sep 1 19:40:10 2020 +0000

    Issue #1:  rename enkf_chgres_recenter executables in accordance with WCOSS Implementation Standards

commit 8a7e8d9944b8727da91bfb28bbfe44958f0aeb65
Merge: 4c9978a8 595edcfa
Author: Kate Friedman <[email protected]>
Date:   Tue Sep 1 15:00:08 2020 -0400

    Merge pull request #121 from KateFriedman-NOAA/feature/gfsv16b-wafs

    Adding WAFS jobs to GFSv16

commit 4c9978a8b0a98527d7c78a3da0a0a55e39cefed0
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 1 18:48:44 2020 +0000

    modified:   checkout.sh to use gldas_gfsv16_release.v1.6.0

commit 595edcfaaf1372889c8d569e01ec4dfefb51c469
Merge: 8a593c8d 06bda7de
Author: kate.friedman <[email protected]>
Date:   Tue Sep 1 17:30:08 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs

commit ada0fb3155a57bdba074c84e1ab3d73eabb0e2f4
Author: jessica.meixner <[email protected]>
Date:   Tue Sep 1 17:18:27 2020 +0000

    update module for cdo

commit 074f2782438471740453e356b856a4756e59c858
Merge: a1a3d69b 8a593c8d
Author: kate.friedman <[email protected]>
Date:   Tue Sep 1 14:30:56 2020 +0000

    Sync with WAFS branch

commit a1a3d69ba40564f550053b99b4328ba41c7cc45d
Merge: 249b6ef7 06bda7de
Author: kate.friedman <[email protected]>
Date:   Tue Sep 1 14:22:20 2020 +0000

    Sync merge with feature/gfsv16b

commit 8a593c8df03d8a879c5488fbd671fef94f5d867d
Author: kate.friedman <[email protected]>
Date:   Tue Sep 1 14:09:49 2020 +0000

    Update to WAFS tag and added SENDDBN_NTC to both base configs

commit 5270ed831c0b3c428736cbd8a789a4d3cfdcc0fe
Merge: 95ec3329 eabda84f
Author: kate.friedman <[email protected]>
Date:   Tue Sep 1 14:03:53 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs

commit 06bda7dec74831951034b72c83abbb2d994ee539
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 1 14:02:44 2020 +0000

    modified:   link_fv3gfs.sh to not link or copy
    0readme fix_chem fix_fv3  fix_sfc_climo
    which are not used by GFS.v16 and are of large size

commit eabda84f97c11251f672d95bb604ad0c50e8da18
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 1 13:48:11 2020 +0000

    modified:   link_fv3gfs.sh  to remove chgres_cube.fd and chgres_cube.fd in sorc/link_fv3gfs.sh

commit 223492bf6c56c0491c0034dc1d4a0a3e6e97a607
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 1 03:59:53 2020 +0000

    modified:   link_fv3gfs.sh to allow "fix" directories to be removed before rerunning
                link_fv3gfs.sh for RUN_ENVIR=nco case

commit 95ec3329e72a54b0dabdccdecd467972c4914dcd
Author: kate.friedman <[email protected]>
Date:   Mon Aug 31 18:57:32 2020 +0000

    Added WAFS jobs to free-forecast mode, updates for extending WAFS to fh120, and two bug fixes in link_fv3gfs.sh and hpssarch_gen.sh

commit 6f660d9a9a5758f3d74f87f170a95a26ca0c0e6a
Merge: 8da41916 3282a899
Author: kate.friedman <[email protected]>
Date:   Mon Aug 31 17:58:55 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs

commit 3282a8996ab0510699932a53897b87730b2cc492
Author: kate.friedman <[email protected]>
Date:   Mon Aug 31 17:47:37 2020 +0000

    Renamed global-workflow-owned ex-scripts to remove ecf extension and updated other scripts which call those ex-scripts

commit 9cde3a41f34d0c2618e8fb06ff1276cec5378ef5
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 18:46:57 2020 +0000

    Remove UFS_UTILS ecf extensions

commit f7a92dbc1c3ad822d3b8e567967e91384631288d
Author: russ.treadon <[email protected]>
Date:   Fri Aug 28 18:09:26 2020 +0000

    Issue #1:  (1) update earc.sh directory removal to be consistent with arch.sh, (2) update config files to be consistent with EMC real-time GFS v16 parallel

commit 249b6ef761fb41b5d102b282fccedeb827192dff
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 16:52:54 2020 +0000

    Remove ecf script name extensions from downstream wave scripts

commit 004a29f39204314159d2cbd028950cfaba07cf33
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 16:50:03 2020 +0000

    Add new downstream wave jobs to workflow

commit 8da4191644ff55f46e8f394e4e1d29641d3c117c
Merge: 8f97726a 6319bda4
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 16:42:11 2020 +0000

    Sync merge with feature/gfsv16b

commit 8f97726a4170d56dcaf6732ae141fae9aaebfd8d
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 16:39:50 2020 +0000

    Add new downstream WAFS jobs

commit 6319bda47548873acb8859d9a47d2ac6a6ef4c67
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 15:41:55 2020 +0000

    Issue #1 - update GLDAS and UPP workflow files for removal of ecf script extension

commit 8f7615c76f76611d748246a80d9286de7c4d3295
Author: russ.treadon <[email protected]>
Date:   Thu Aug 27 20:53:25 2020 +0000

    Issue #1:  remove ".ecf" suffix from DA scripts referenced in sorc/link_fv3gfs.sh

commit af754d1fa0aa4a521fcd5b4fc04eaa88d475dbff
Author: russ.treadon <[email protected]>
Date:   Thu Aug 27 20:47:14 2020 +0000

    Issue #1: remove ".ecf" extension from DA exscripts (as per WCOSS Implementation Standards) referenced from parm/config files

commit a6e91b48b7024c83491fd1f93c6d7df8e3301af5
Author: jessica.meixner <[email protected]>
Date:   Thu Aug 27 20:25:45 2020 +0000

    updates to resources for wave jobs

commit f0b9a98973b7983eadab51c7009723b5d0b4a564
Author: russ.treadon <[email protected]>
Date:   Wed Aug 26 23:04:02 2020 +0000

    Issue #1:  update name of DA enkf chgres script in config.echgres

commit 01f33c498bf0b5c0d48486cd04dab9c93c721906
Author: russ.treadon <[email protected]>
Date:   Wed Aug 26 20:58:29 2020 +0000

    Issue #1:  Rename DA enkf chgres job and script as per EE2 guidance

commit 7d3f37819aba17dc794d10f7453061802779b435
Author: kate.friedman <[email protected]>
Date:   Wed Aug 26 18:35:59 2020 +0000

    Workflow changes for wave gempak and awips downstream jobs

commit 485632eafe37c1866011af1bd0a601fb1c7adc4c
Merge: 2946baad e191fd4b
Author: Jessica Meixner <[email protected]>
Date:   Wed Aug 26 11:49:40 2020 -0400

    Merge pull request #3 from KateFriedman-NOAA/feature/gfsv16b-wave

    Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py

commit e191fd4bb87af787feab486bf072fe4dce7f12f4
Author: kate.friedman <[email protected]>
Date:   Wed Aug 26 15:47:49 2020 +0000

    Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py

commit 4641a72e1ced493c7ec5d837a3093908e388b5df
Merge: a1b08c92 25ae4899
Author: Kate Friedman <[email protected]>
Date:   Wed Aug 26 11:33:23 2020 -0400

    Merge pull request #119 from GeorgeGayno-NOAA/feature/gfsv16b

    enkf_chgres_recenter_nc.fd - Remove hard-coded vertical levels.

commit 25ae4899cee3dc3aeff1e36f0ac1d0b0773ca2f9
Author: George Gayno <[email protected]>
Date:   Wed Aug 26 14:25:36 2020 +0000

    feature/gfsv16b:  Add Cory's updates to build 'enkf_chgres_recenter_nc'
    on Cray.

    Issue #102.

commit 2946baad88d908b32793f542cab42f0c89adf009
Author: jessica.meixner <[email protected]>
Date:   Wed Aug 26 13:44:06 2020 +0000

    cleaning up wave point post scripts

commit 3590e9a45e2b13b22ff3c3d4827907ddcf55eebf
Merge: 727c3ffd a1b08c92
Author: George Gayno <[email protected]>
Date:   Tue Aug 25 20:20:17 2020 +0000

    feature/gfsv16b:  Merge updates from authoratative feature/gfsv16b
    branch.

    Issue #112.

commit a1b08c92892278453f25c2530f8b8fb968af9a34
Merge: 45ad029b ce3816d3
Author: Kate Friedman <[email protected]>
Date:   Tue Aug 25 16:01:57 2020 -0400

    Merge pull request #116 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen

    Feature/gfsv16 wave prdgen

commit ce3816d3e88b8d2de7472a214e66cb54aceca9a6
Merge: b0c91610 45ad029b
Author: wx21rph <[email protected]>
Date:   Tue Aug 25 19:55:53 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16_wave_prdgen

    Issue #94 Adding prdgen for waves

commit 90181842fbb7a22479f12d3a67bcdc8fa4b8f669
Author: jessica.meixner <[email protected]>
Date:   Tue Aug 25 19:02:22 2020 +0000

    rename wave post script

commit 1f15be0a8207d3117200bcc145a5ae66b7445ec3
Author: jessica.meixner <[email protected]>
Date:   Tue Aug 25 19:01:41 2020 +0000

    remove gridded so can rename

commit 1fc5b368fe0cd438e2202b62de7753b7efed7af6
Author: Jessica.Meixner <[email protected]>
Date:   Tue Aug 25 19:00:20 2020 +0000

    updates to boundary point

commit f0e3ae5c2cd441673a4a670618e87f050a12c9e9
Merge: 98d6c163 b74b21e7
Author: Jessica Meixner <[email protected]>
Date:   Tue Aug 25 14:15:57 2020 -0400

    Merge pull request #2 from KateFriedman-NOAA/feature/gfsv16b-wave

    Feature/gfsv16b wave

commit b74b21e71edbb62207ccfcafe4c6ed5b6d301cfe
Author: kate.friedman <[email protected]>
Date:   Tue Aug 25 18:14:15 2020 +0000

    Remove extra space from line

commit 25e2cc4596213b39d2a3dc3ee8afda4a86e10d38
Author: kate.friedman <[email protected]>
Date:   Tue Aug 25 18:12:04 2020 +0000

    Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes

commit 45ad029bad4367961e5eff987f27226b0ac78d5a
Author: russ.treadon <[email protected]>
Date:   Tue Aug 25 13:40:45 2020 +0000

    Issue #1:  several minor changes

    * Externals.cfg and sorc/checkout.sh:  update to tag verif_global_v1.10.1

    * jobs/rocoto/arch.sh:  update ARCDIR cp to use new path to tracker output

    * scripts/run_gfsmos_master.sh.dell:  remove module purge from mos driver script

commit 0a85a36ef0784bebf96d2f97c24dd4c642ac23f1
Merge: d5861551 5190efb1
Author: Kate Friedman <[email protected]>
Date:   Tue Aug 25 09:20:42 2020 -0400

    Merge pull request #118 from GuangPingLou-NOAA/feature/gfsv16b

    Issue #117 Modufy Bufr station Hilo's grid point representation

commit 5190efb119c6eec6a7c67d90327dee4666307541
Author: Guang.Ping.Lou <[email protected]>
Date:   Tue Aug 25 12:30:45 2020 +0000

    Issue #117 Modufy Bufr station Hilo's grid point representation

commit 98d6c16336e5b0a3241174c54b7631667a4f919d
Merge: 0eacf5e2 32bd57ef
Author: Jessica.Meixner <[email protected]>
Date:   Mon Aug 24 22:27:39 2020 +0000

    Merge branch 'feature/gfsv16b-wave' of github.com:JessicaMeixner-NOAA/global-workflow into feature/gfsv16b-wave

commit 0eacf5e21c3149d2d922b4c2495e48fb2355e639
Author: Jessica.Meixner <[email protected]>
Date:   Mon Aug 24 22:27:28 2020 +0000

    fix typos

commit b0c9161061302ccf4b890cceabe5b4eaecb67e61
Author: wx21rph <[email protected]>
Date:   Mon Aug 24 22:25:05 2020 +0000

    Issue #94 changing native by interpolated grids for gempak

commit 8a68d3c6d6996f389609d5961f32f0db116797d1
Author: wx21rph <[email protected]>
Date:   Mon Aug 24 21:47:44 2020 +0000

    Issue #94 removing the load of modulefiles and sending set.pdy to j-jobs

commit 32bd57ef2b390dbe73a744188a40ca4c42c306fe
Author: jessica.meixner <[email protected]>
Date:   Mon Aug 24 20:35:39 2020 +0000

    updating WCOSS work around for CDO, CDO_ROOT is missing from module file

commit a2d06bb0bf82ee48899cb26ea9abf2331b543107
Author: jessica.meixner <[email protected]>
Date:   Mon Aug 24 18:55:02 2020 +0000

    adding module use for cdo module on wcoss dell

commit e5c9f037bd82ed4bc72cf11241d7c053160ff5b9
Author: jessica.meixner <[email protected]>
Date:   Mon Aug 24 18:29:36 2020 +0000

    updates for new weights file and adding cdo module for wave prep

commit 96655fbe5b5daf130d4a9a458ce47059c047376a
Author: wx21rph <[email protected]>
Date:   Mon Aug 24 16:56:37 2020 +0000

    Issue #94 removing modulefiles load from j-jobs

commit 7f9344f777075ce3220d9a9fccba74c07e4f40e2
Author: wx21rph <[email protected]>
Date:   Mon Aug 24 14:32:26 2020 +0000

    Issue #94 Solving reviewers comments

commit c9598a3207bb06cbd7d2619d97f723f6511da9a4
Merge: bf97710b 92a2a43d
Author: Jessica Meixner <[email protected]>
Date:   Mon Aug 24 10:12:43 2020 -0400

    Merge pull request #1 from KateFriedman-NOAA/feature/gfsv16b-wave

    Adding new wavepostbndpnt and wavepostpnt jobs

commit 92a2a43db190982944b4166b929a791a1b0b0750
Author: kate.friedman <[email protected]>
Date:   Mon Aug 24 14:06:23 2020 +0000

    Adding new wavepostbndpnt and wavepostpnt jobs

commit bf97710bece30195679740b0de2b32e0adc6c3c6
Author: Jessica.Meixner <[email protected]>
Date:   Fri Aug 21 00:20:56 2020 +0000

    updating wave post scripts for restructured format

commit a914521cec478667191b365e2a2a62e3553e0ff7
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 23:52:47 2020 +0000

    updates to JJOBs for wave post point for new structure

commit 1f195f8d432072f4e4f66406ea6b09256a185d2b
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 15:20:28 2020 +0000

    changing exit 0 to exit number for FATAL errors in ice prep for waves

commit f836a7869dbb88badd93fcd9d08314284eee4f96
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 15:17:28 2020 +0000

    updating error message and exit if there is no current
    input file

commit 529cc3692f4fc003295584e761279be3c9405b68
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 14:50:50 2020 +0000

    update WAVE_PREP so that currents do not check for previous 24 hour
    so that parallels will be reproducible
    also deleted unused variable

commit 57c4258ba73778fe95118ebfae98c4bbf012ae37
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 14:09:22 2020 +0000

    renaming wave job and scripts

commit 1626cb2f90bfea5663f198cfc2ac2916a9200e1a
Merge: da292216 d5861551
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 14:02:54 2020 +0000

    Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-splitwavepost

commit da2922163922f4b4b14dba78dba36e9eced3a2c5
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 13:50:15 2020 +0000

    update jobs for waves

commit a1c456f267ddf701aa47ad33fd231a2f1ae0bf99
Author: wx21rph <[email protected]>
Date:   Wed Aug 19 20:09:47 2020 +0000

    Issue #94  renaming the J-jobs

commit 036617c8a9b5da765b82c276f7b087aa4e16d679
Author: wx21rph <[email protected]>
Date:   Wed Aug 19 14:24:01 2020 +0000

    Issue #94  Updating the modulefiles for waves-prdgen

commit d5861551ae5b1fe2c2b00802159a42f7fde06357
Merge: 9b923ac3 0e0699aa
Author: Kate Friedman <[email protected]>
Date:   Wed Aug 19 09:49:08 2020 -0400

    Merge pull request #109 from NOAA-EMC/feature/gfsv16b-restructure

    GFSv16 restructure for new $COMPONENT subfolder

commit 1e76093c8554c3ccb87a7ed243f738f5763ca5da
Author: wx21rph <[email protected]>
Date:   Wed Aug 19 13:47:44 2020 +0000

    Issue #94  adding waves-prdgen to gfsv16

commit 0e0699aac7cb00988c999546dcdf3a52b11706e3
Author: kate.friedman <[email protected]>
Date:   Wed Aug 19 13:47:29 2020 +0000

    Issue #94 - fix to messed up shebang in setup_expt_fcstonly.py

commit c7a708fd54ffe60c6259f35c4230e6e73ecd6f77
Author: wx21rph <[email protected]>
Date:   Tue Aug 18 21:16:19 2020 +0000

    Issue #94 adding waves-prdgen for gfsv16

commit 0b2744e53a35c570178b7e6cd7ede72b6255c579
Author: Kate.Friedman <[email protected]>
Date:   Fri Aug 14 17:36:31 2020 +0000

    Issue #94 - pull in two fixes for wave job setup in free-forecast mode

commit 4888001e76d24277b3a75d1d520945383f49d456
Author: Jessica.Meixner <[email protected]>
Date:   Fri Aug 14 18:55:40 2020 +0000

    updates for wave scripts to split them, also added updates from
    GEFS branch to add extra error checking

commit 00dc1973010b68e65e176c90a1eeaef359b7beae
Author: Kate.Friedman <[email protected]>
Date:   Fri Aug 14 17:36:31 2020 +0000

    Issue #94 - pull in two fixes for wave job setup in free-forecast mode

commit fe849e918b30e6a9ca22ebe1a81e350afc4ed6cf
Merge: 0c06cda7 9b923ac3
Author: kate.friedman <[email protected]>
Date:   Thu Aug 13 18:49:52 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit 9b923ac308841d7accfc6ed2a4ef9733dce2305e
Author: kate.friedman <[email protected]>
Date:   Thu Aug 13 18:37:51 2020 +0000

    Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal

commit 0c06cda7dd667e936e8aa71fc1c584a4839094ba
Author: kate.friedman <[email protected]>
Date:   Mon Aug 10 18:50:44 2020 +0000

    Issue #94 - update CFP module version on WCOSS-Dell

commit b73d25224d8208291048b774a91497928b051713
Author: kate.friedman <[email protected]>
Date:   Mon Aug 10 17:58:55 2020 +0000

    Issue #94 - update WCOSS-Dell module versions to prod_util and EnvVars

commit 485ee56c1e772e8efa944ee9a3f350130d49a718
Author: kate.friedman <[email protected]>
Date:   Mon Aug 10 13:00:42 2020 +0000

    Issue #94 - fix AWIPS file dependency

commit bdaa28fbdc2372ed85320a4b044a33d350e2e7be
Author: kate.friedman <[email protected]>
Date:   Fri Aug 7 13:34:22 2020 +0000

    Issue #94 - updates for FSU tracker

commit 4cee6f65467c34e171ed3e0bdc72458a875e5e21
Author: kate.friedman <[email protected]>
Date:   Wed Aug 5 17:14:04 2020 +0000

    Issue #94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post

commit 563d2931378c3d6276212cc9c4e2a4e9a286589c
Author: kate.friedman <[email protected]>
Date:   Tue Aug 4 18:19:47 2020 +0000

    Issue #94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh

commit 8a1fea478bcfdec3ad436e77fdfe8c601a050c77
Author: kate.friedman <[email protected]>
Date:   Thu Jul 30 18:27:57 2020 +0000

    Issue #94 - move UFS_UTILS link script step from build_ufs_utils.sh to link_fv3gfs.sh based on feedback from GEFS team

commit f54d938ac8faf3c5d0362770b645dcef57b43c30
Author: kate.friedman <[email protected]>
Date:   Wed Jul 29 14:28:03 2020 +0000

    Issue #94 - reverting GSI and EMC_gfs_wafs checkouts back to authoritative repos ahead of their updating for new , will update EMC_gfs_wafs to new tag when available

commit d3866af6cc8060f88b3bd780b7f6a6f52a8ecba0
Author: kate.friedman <[email protected]>
Date:   Wed Jul 29 13:39:07 2020 +0000

    Issue #94 - add default to fhmax in vrfy.sh for when prior tasks disabled and set new path to restructured gfsmos

commit 9c2791ed037d62f35aa33875c20de8ac3f823337
Merge: e8a714b2 d1751309
Author: kate.friedman <[email protected]>
Date:   Mon Jul 27 14:44:59 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit e8a714b2fa20cce87ed018b3a9215bef37ee0d10
Author: kate.friedman <[email protected]>
Date:   Mon Jul 27 14:37:34 2020 +0000

    Issue #94 - retire BASE_SVN

commit 5867d4b3de7b6ee7d8f913d573b4a0f44d973320
Author: Jessica.Meixner <[email protected]>
Date:   Fri Jul 24 15:00:41 2020 +0000

    updates from gefs post workflow: updates for re-run case
    as well as extra error messages

commit 03daf01d440e702deccfcd246db069783f2c513d
Author: kate.friedman <[email protected]>
Date:   Fri Jul 24 14:14:25 2020 +0000

    Issue #94 - removing new install script, will introduce via another branch, needs more testing

commit 9c0765cec06ea0f80528cba722884a4971beb345
Author: kate.friedman <[email protected]>
Date:   Fri Jul 24 14:08:36 2020 +0000

    Issue #94 - add  to gempak scripts and cleanup based on PR feedback

commit fb70d6fb7a2407bd17c2c587224e66401a6cf1c0
Author: kate.friedman <[email protected]>
Date:   Thu Jul 23 14:35:56 2020 +0000

    Issue #94 - updating GLDAS and EMC_post tags in Externals.cfg

commit 3bfdc01419b1ea8748f8ce7ebcf00ac6b520f8d7
Author: kate.friedman <[email protected]>
Date:   Thu Jul 23 14:34:28 2020 +0000

    Reverting link_fv3gfs.sh, will commit in different changeset

commit d1751309fc1999cdc4fdbc603e429ee61fbcf38c
Author: russ.treadon <[email protected]>
Date:   Thu Jul 23 11:20:15 2020 +0000

    Issue #1:  refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env

commit 821c93cae54d9fa24887cbe2072df4f63aeadb7d
Merge: 95ce8235 145f8105
Author: kate.friedman <[email protected]>
Date:   Tue Jul 21 17:15:43 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit 95ce823552c20aa15426c4c98feb3c7d147ec89e
Author: kate.friedman <[email protected]>
Date:   Tue Jul 21 14:10:09 2020 +0000

    Issue #94 - new GLDAS tag with atmos directory

commit 145f81056802cb7246a50f7951c2e191a994032f
Author: russ.treadon <[email protected]>
Date:   Mon Jul 20 21:09:40 2020 +0000

    Issue #1:  add enkf member sfcf006.nc to enkf tarballs

commit ab89088d3a59ee5d5389fa8e527e0444692c1542
Author: kate.friedman <[email protected]>
Date:   Mon Jul 20 19:07:02 2020 +0000

    Issue #94 - component checkout updates to use forks and new UPP tag

commit 4eec6641424d3947ae792f632f9b401bb569173a
Author: kate.friedman <[email protected]>
Date:   Mon Jul 20 13:31:23 2020 +0000

    Issue #94 - fix dirpath in ush/hpssarch_gen.sh

commit 727c3ffdeee5b77e65b6665b2cf34b6a30736bbc
Author: George Gayno <[email protected]>
Date:   Fri Jul 17 18:27:26 2020 +0000

    feature/gfsv16b  This commit references #102.

    Some cleanup to enkf_chgres_recenter_nc.

commit d0378245016ba506b9e57a35dcaed8ce10830a9a
Author: George Gayno <[email protected]>
Date:   Fri Jul 17 15:59:59 2020 +0000

    feature/gfsv16b  This commit references #102.

    Initial updates to enkf_chgres_recenter_nc to output any
    number of vertical levels.  Turn off horizontal interpolation
    if input and output grids are the same.

commit 273c5353bc310b22459fe605662c07922a41e4f4
Author: kate.friedman <[email protected]>
Date:   Thu Jul 16 17:52:43 2020 +0000

    Issue #94 - revert RSTDIR_WAVE if-block compression to retain breakpoint restarting

commit 3d9f0dc81a63b5d1b54981314fac36a82119e811
Author: kate.friedman <[email protected]>
Date:   Thu Jul 16 17:19:21 2020 +0000

    Issue #94 - remove COMPONENTatmos and COMPONENTwave, use COMIN[COMOUT]atmos[wave] instead

commit 19d3f72b5f6f1ec145cf95e47c1fe9ca970d40cb
Author: kate.friedman <[email protected]>
Date:   Thu Jul 16 16:05:56 2020 +0000

    Issue #94 - updates to wave scripts based on NCO feedback

commit 0056b413a65aea9700561c5a9b07946fb34be6b5
Merge: 987d8cf5 d7425d02
Author: kate.friedman <[email protected]>
Date:   Thu Jul 16 13:35:13 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit 987d8cf5621e8c302d0f9a7941f4d74222fbf218
Author: kate.friedman <[email protected]>
Date:   Wed Jul 15 17:50:34 2020 +0000

    Issue #94 - added  and [wave] back in after feedback from Steven Earle, also renamed the wave scripts to match the correct convention

commit 49825b3b93080b70b56752477a9406e1765ecdf3
Author: BoiVuong-NOAA <[email protected]>
Date:   Tue Jul 14 23:04:08 2020 +0000

    GitHub Issue#94 update gempak's ush scripts

commit d7425d02bb9027fe3ea5ceb31d515d70dddb4ec4
Author: fanglin.yang <[email protected]>
Date:   Tue Jul 14 19:50:54 2020 +0000

    Revert "modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos"

    This reverts commit 49772711c37d74740427c241a477afe21ee62d7c.

commit 49772711c37d74740427c241a477afe21ee62d7c
Author: fanglin.yang <[email protected]>
Date:   Tue Jul 14 19:45:32 2020 +0000

    modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos

commit 8b0f57fdfd4a8710e176f0035356fb01d781dd70
Author: fanglin.yang <[email protected]>
Date:   Mon Jul 13 23:43:55 2020 +0000

    modified:   ../Externals.cfg  and   checkout.sh to check out
                UPP tag tag upp_gfsv16_release.v1.0.10  and model tag GFS.v16.0.10
                Updated the algorithm used to compute CAPE and CIN in UPP.  The computation
                is now bounded from the surface up to 1 hPa instead of the model top to
                avoid producing erroneous large CAPE and CIN values.

commit 37e0f57d948fa98c66fcc9d9695de2769a4a38d2
Author: kate.friedman <[email protected]>
Date:   Mon Jul 13 17:26:52 2020 +0000

    Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh

commit 663542ea2219eae322437058693cae3ade14e125
Author: kate.friedman <[email protected]>
Date:   Fri Jul 10 20:01:17 2020 +0000

    Issue #94 - fix dependencies with  in the path

commit 866c4c4cf1a2cd177fed81396ddb40e657e8d55b
Author: kate.friedman <[email protected]>
Date:   Fri Jul 10 15:22:33 2020 +0000

    Issue #94 - convert  variables into hard-coded values per feedback

commit d57fc02801232de745e1c66b6cb0b459218dc042
Author: fanglin.yang <[email protected]>
Date:   Wed Jul 8 22:59:35 2020 +0000

    modified:   checkout.sh to checkout model tag GFS.v16.0.9

     1.   WW3 update: write all restart files in a sub-directory restart_wave
     2.   Port production/GFS.v16 to Orion (#129)
        * Update FV3 submodule
        * Update NEMS submodule
        * Add 'ulimit -s unlimited' to Orion job card template
        * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS'
        * Update modulefiles/orion.intel/fv3
        * Update regression test configuration on Orion (for gfs_v16)
        * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance)
        * Update NEMS submodule (point to NOAA-EMC/NEMS)

commit 233f9f615ab1d5cee29c45143655978112bb79fe
Merge: 506e3bf4 ae7dbdb2
Author: kate.friedman <[email protected]>
Date:   Wed Jul 8 19:44:40 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit 506e3bf4d627093b06bc0a2d5cac63f99767742f
Author: kate.friedman <[email protected]>
Date:   Wed Jul 8 17:43:14 2020 +0000

    Issue #94 - initial add of COMPONENTatmos variable to scripts

commit ae7dbdb2a37daabaa178b8924bad22684a673d4e
Merge: 6e73de0c 58fb7954
Author: Fanglin Yang <[email protected]>
Date:   Wed Jul 8 11:30:07 2020 -0400

    Merge pull request #96 from NOAA-EMC/feature/gfsv16b_restart

    modified:   exglobal_fcst_nemsfv3gfs.sh etc to enable WW3 break-point restart capability

commit 58fb79548b2ac34a477b4520ca99ce32280b00fd
Merge: 4a1cf2b6 6e73de0c
Author: fanglin.yang <[email protected]>
Date:   Tue Jul 7 15:58:25 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart

commit 6e73de0ce5cd82c9e97d8078dd1ddd253f05a258
Author: russ.treadon <[email protected]>
Date:   Tue Jul 7 15:03:09 2020 +0000

    Issue #1:  set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA"

commit 22ad770016b8a61bb672f1f76d62cb3d133f247c
Author: russ.treadon <[email protected]>
Date:   Tue Jul 7 13:47:26 2020 +0000

    Issue #1:  update sorc/checkout.sh to checkout verif_global_v1.9.0

commit 4a1cf2b6f45a76b91fbfa048def2cd647598e154
Author: fanglin.yang <[email protected]>
Date:   Mon Jul 6 23:59:03 2020 +0000

    further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle  as well

commit 5fe1a217d28e6710502b9524d3e3cce035364c37
Author: fanglin.yang <[email protected]>
Date:   Sat Jul 4 19:43:29 2020 +0000

    modified:   jobs/JGLOBAL_FORECAST   parm/config/config.wave   scripts/exglobal_fcst_nemsfv3gfs.sh
        add WW3 break-point restart capability and clean up forecast script.

commit 3fe6f9fc3aff9cff75aa6179cc545e635d28f312
Author: kate.friedman <[email protected]>
Date:   Mon Jun 29 19:44:12 2020 +0000

    Issue #94 - commit initial version of new installation script

commit 30e56f2e84c6f1a66dc73db53cabc898b657374c
Author: kate.friedman <[email protected]>
Date:   Mon Jun 29 19:41:31 2020 +0000

    Issue #94 - generalization updates to link script

    - change 'nco' mode to 'prod' mode
    - change 'emc' mode to 'dev' mode
    - update machine values to match target names

commit 28b1faf03c5ad12e4e9a44f1d02c754f1441ebc7
Author: fanglin.yang <[email protected]>
Date:   Fri Jun 26 02:31:18 2020 +0000

    modified:   config.vrfy to add
        elif [ $machine = "HERA" ] ; then
            export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

commit 61f4a52e299482687d84ef6686e6a65f64fe57f3
Author: fanglin.yang <[email protected]>
Date:   Fri Jun 26 02:21:33 2020 +0000

    corrected a typo in  hpssarch_gen.sh
    -     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
    +     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

commit b10a9306b732e543d2be3b932d556ebcdcbe8a5e
Author: fanglin.yang <[email protected]>
Date:   Thu Jun 25 20:25:30 2020 +0000

    modified:   config.vrfy to point a different syndat directory on Hera
           export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
           export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

commit b8192e54988f2fb2f4cda0510af02a090dfdda2e
Author: russ.treadon <[email protected]>
Date:   Thu Jun 25 18:20:01 2020 +0000

    Issue #1:  HPSS archive and MOS script changes

     * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

     * add ensemble resolution analysis to HPSS gdas tarball

     * allow variable range to be externally set in run_gfsmos_master scripts

commit e599c368a2d55018e4a1567717efd7ffa09f14d9
Merge: 99277ae3 1e56eddb
Author: Kate Friedman <[email protected]>
Date:   Wed Jun 24 14:16:22 2020 -0400

    Merge pull request #93 from JessicaMeixner-NOAA/bugfix/exiterr

    fix for exiting properly with error for wave prep/init scripts

commit 1e56eddb055b1414385e276ac73255d3ede9e9e9
Author: JessicaMeixner-NOAA <[email protected]>
Date:   Wed Jun 24 12:36:53 2020 -0500

    fix for exiting properly with error for wave prep/init scripts

commit 99277ae34ef50454fa15e7e28b564c2e34e3406c
Merge: 14dd3c94 4f8d5a5f
Author: fanglin.yang <[email protected]>
Date:   Tue Jun 23 16:05:16 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 4f8d5a5f28c7120905fe36e9254f0199da986188
Author: Kate Friedman <[email protected]>
Date:   Tue Jun 23 11:57:26 2020 -0400

    Update README.md

    Remove use/mention of manage_externals until checkout.sh is retired.

commit 14dd3c94938b0e69601e25a42104b2fc23944ebd
Author: fanglin.yang <[email protected]>
Date:   Tue Jun 23 15:53:11 2020 +0000

    modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
       and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

    1) Inline POST Issues #136 and $142
       * Update ceiling height calculation for global FV3.
       * add low,middle,high instantaneous cloud fraction
       * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
       * fix a bug in initializing DBZI
       * output mixed layer CAPE/CIN
       * remove simulated GOES-12 brightness temperature.
       * change the names of time averaged low/mid/high cloud fractions in grib2 files
         from "TCDC" to "LCDC/MCDC/HCDC", respectively.

    2) Model Issue #152
       * update in-line post control files
       * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

commit dd76002425a03905bfc6ef63d3f43a6813814497
Merge: df89cc80 dd599eaa
Author: Kate Friedman <[email protected]>
Date:   Tue Jun 23 11:34:40 2020 -0400

    Merge pull request #91 from christopherwharrop-noaa/feature/fix_externals

    Update version of upp in Externals.cfg to be consistent with sorc/che…

commit dd599eaa4f379e1eb8fc5e057f7904b0e6290d48
Author: Christopher Harrop <[email protected]>
Date:   Tue Jun 23 15:25:08 2020 +0000

    Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

commit df89cc800d3c479c132a5e679a2562af91b32f62
Author: RussTreadon-NOAA <[email protected]>
Date:   Fri Jun 19 18:40:26 2020 -0400

    Update config.resources

    Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

commit ff8cd28365377f0ceed87ff8b4b9a9b4b6e91368
Merge: 1dd83b81 965ff420
Author: russ.treadon <[email protected]>
Date:   Thu Jun 18 20:07:59 2020 +0000

    Issue #1:  merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b

commit 965ff4203f132c6b032398a7a56494329714247c
Author: russ.treadon <[email protected]>
Date:   Thu Jun 18 20:02:23 2020 +0000

    Issue #85:  update DA checkout to point at release/gfsda.v16.0.0

commit 71d714119960feed1f0807708cdf85677ab81d73
Author: russ.treadon <[email protected]>
Date:   Tue Jun 16 20:11:33 2020 +0000

    Issue #85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

commit 1dd83b818e9f2babbd11b762951721cf2a4c415e
Author: fanglin.yang <[email protected]>
Date:   Tue Jun 16 16:07:45 2020 +0000

    modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

commit eb0e3b4d009047251c535eea6fdc5958e58e68f7
Author: fanglin.yang <[email protected]>
Date:   Tue Jun 16 14:43:29 2020 +0000

    update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

commit dfc76f0715a29e52e4d7133a8259c492229a5c22
Author: Kate.Friedman <[email protected]>
Date:   Tue Jun 16 13:32:01 2020 +0000

    Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

commit 7078bb5c680d54297101fae573579be24411a94a
Author: fanglin.yang <[email protected]>
Date:   Tue Jun 16 13:22:43 2020 +0000

    modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
    modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

commit 15d5bed4119b067905f5a4bf47656557f2211883
Author: russ.treadon <[email protected]>
Date:   Mon Jun 15 20:47:47 2020 +0000

    Issue #85:  add cfp option to chgresfcst; enable threads with chgresfcst

commit d8782697fa698c00daa242a656246cf5f5d9b537
Author: Kate.Friedman <[email protected]>
Date:   Mon Jun 15 16:00:35 2020 +0000

    Issue #1 - update Externals.cfg to match updates to checkout.sh

commit a2bd621727701e9526feccc7ce8ebd43be31860f
Merge: 22b735d3 295cd05f
Author: Kate Friedman <[email protected]>
Date:   Mon Jun 15 11:57:14 2020 -0400

    Merge pull request #84 from NOAA-EMC/feature/gfsv16b_herawavepost

    Adapting wavepostsbs for running on Hera

commit 295cd05f306e4d70d09880a41fd60fadce74bab3
Author: Jose-Henrique Alves <[email protected]>
Date:   Mon Jun 15 11:53:13 2020 -0400

    Update exwave_post_sbs.sh

    Removing obsolete nm variable entries

commit 22b735d310413989568dca4b30d19eadcd4c3fdb
Author: fanglin.yang <[email protected]>
Date:   Fri Jun 12 20:06:49 2020 +0000

    modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

    output cloud ceiling height and instant total cloud fraction.
    output instant cloud fraction at low/mid/high cloud layer.
    correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
    output radar reflectivity at 1/4 km above ground and model layer 1/2.
    output mixed layer CAPE/CIN.
    Remove simulated GOES-12 brightness temperature from gfs product.
    Add the bug fix of initializing DBZI from Ruiyu.

commit 10ce1d4140c7c0fe795ded39e1fa550e0c202c59
Author: Kate.Friedman <[email protected]>
Date:   Thu Jun 11 18:42:22 2020 +0000

    Issue #1 - Hotfix to update anaconda module contrib path on Hera

commit 58d1139c196f92bd4bb149008a8d61eb6457fb3c
Author: henrique.alves <[email protected]>
Date:   Thu Jun 11 02:44:41 2020 +0000

    Adapting wavepostsbs for running on Hera

commit c330e60197c38acb724cfdf4a30a20417a6618b4
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Jun 10 21:17:00 2020 +0000

    add checkout.sh to test on Dell

commit 201609b2d43acd13a08bf1d5ab2251db90a11d32
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Jun 10 20:51:51 2020 +0000

    Commit changes from debugging addition of chgresfcst on hera

commit 4405a2c74c8b5a40ee6edd7b4c2faba9bd41b59c
Author: russ.treadon <[email protected]>
Date:   Wed Jun 10 14:36:03 2020 +0000

    Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

commit fc3066c2b7a5edd9f0d510b88f8542b07b8a8589
Author: CoryMartin-NOAA <[email protected]>
Date:   Wed Jun 10 14:19:07 2020 +0000

    First draft to add chgresfcst to rocoto workflow

commit 9f2e4ecfe5799e13a4f6b9e80f7ff3e7b4a3633c
Author: russ.treadon <[email protected]>
Date:   Mon Jun 8 00:34:07 2020 +0000

    Issue #1:  correct typo in scripts/exwave_prep.sh

commit 5a8b8f2e80532b7e446c51a69dcb83c7a212395d
Author: russ.treadon <[email protected]>
Date:   Mon Jun 8 00:15:31 2020 +0000

    Issue #1:  check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS

commit a7306aa93d537da5b165297e0dc34ba88856d4c7
Author: fanglin.yang <[email protected]>
Date:   Sun Jun 7 23:22:53 2020 +0000

    modified:   jobs/rocoto/post.sh
       wait for 5 minutes if forecast history file does not exist before exit

    modified:   modulefiles/module_base.hera
       use GV's temporal build of  netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA

    modified:   parm/config/config.base.emc.dyn
       add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave

    modified:   parm/config/config.fcst
       -- fix a bug related to setting npe_wav for gfsfcst.
           if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi
       -- set  io_layout="4,4" for writing gfs restart files

    modified:   parm/config/config.wave
       set WAVE restart frequency based on restart_interval_gfs (by H. Alves).

commit 1082885b082e8a837aef095deb6a3343fca26cb3
Merge: 968b9860 bf5a5c44
Author: Fanglin Yang <[email protected]>
Date:   Thu Jun 4 20:26:47 2020 -0400

    Merge pull request #83 from NOAA-EMC/feature/gfsv16b_restart

    revive GFS forecast break-point restart capability with IAU turned on

commit bf5a5c44bdebff5663225e9e9548ba83f498f7cd
Merge: b27a01db 968b9860
Author: fanglin.yang <[email protected]>
Date:   Thu Jun 4 23:36:52 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart

commit 968b98609fe2016518f3adcc6b178bdca0b73bcf
Merge: 9b36cfde dc512dd6
Author: Guang Ping Lou <[email protected]>
Date:   Thu Jun 4 19:20:53 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 9b36cfde2032e9296cc7567704e1274560b2897e
Author: Guang Ping Lou <[email protected]>
Date:   Thu Jun 4 19:12:56 2020 +0000

    Unify output path in gfs_bfr2gpk.sh

commit 7675368c3f7f3942b7f8a57bad4c29a38cef48fa
Author: Guang Ping Lou <[email protected]>
Date:   Thu Jun 4 19:11:23 2020 +0000

    remove station elevation adjustment to T,Q and evaporation bug fix

commit dc512dd68df088361c340ac01ec3c8130707ffd1
Merge: a7b25a3b 987c32af
Author: Fanglin Yang <[email protected]>
Date:   Thu Jun 4 12:55:33 2020 -0400

    Merge pull request #82 from NOAA-EMC/feature/gfsv16b_wavehera

    Adjustment to wave workflow for running wave component on Hera

commit 987c32af7c7e94c53f50d20e1ad3c8b27e2c9afb
Author: Jose-Henrique Alves <[email protected]>
Date:   Thu Jun 4 12:08:05 2020 -0400

    Updating checkout to ufs-weather-model GFS.v16.0.5

commit a7b25a3bb0b7b5f1b8a15204ff1e7c061ea1199a
Author: Mallory Row <[email protected]>
Date:   Thu Jun 4 14:59:22 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0

commit 0acee674759a5e2c8fbd4ec7b1cdd0459f95e2bd
Author: russ.treadon <[email protected]>
Date:   Wed Jun 3 20:10:09 2020 +0000

    Issue #1:  remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github

commit b27a01db1516f9aa229e75957885ffa2125d31d6
Author: fanglin.yang <[email protected]>
Date:   Wed Jun 3 16:58:29 2020 +0000

    modified:   parm/config/config.fcst
    modified:   scripts/exglobal_fcst_nemsfv3gfs.sh

    GFS forecast restrat capability from a breakpoint is no longer working
    with IAU turned on.  This function has been overhauled to make it more
    general and works for cases with and without IAU

commit ba895481be53906878f58c2998a398bc59870ea2
Author: Jose-Henrique Alves <[email protected]>
Date:   Wed Jun 3 09:59:35 2020 -0400

    Update JWAVE_PREP

    Removing lines using for testing presence of files while debugging.

commit bb79d7a33c423770f4972c9c643c5dfa7fb0f3be
Author: wx20ha <[email protected]>
Date:   Wed Jun 3 02:45:33 2020 +0000

    Fixing a few minor bugs in wave_tar.sh after testing on WCOSS

commit 8dc2e255e77a55c0f7d90a5018f769ade1e83a9f
Author: fanglin.yang <[email protected]>
Date:   Wed Jun 3 01:41:18 2020 +0000

    add new file:   run_gfsmos_master.sh.hera

commit 3393cac802b289cb9b6867c003ff27ef1711327a
Author: henrique.alves <[email protected]>
Date:   Thu May 28 00:01:51 2020 +0000

    Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep.

commit 32c5f29b62cf747662909ff50a6bf8f327127a09
Merge: 49abb906 e87b5a18
Author: henrique.alves <[email protected]>
Date:   Wed May 27 17:40:34 2020 +0000

    Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera

commit 49abb9068effc5aeeba8f861f44207b67ff442c9
Author: henrique.alves <[email protected]>
Date:   Wed May 27 17:36:12 2020 +0000

    Adding comment indicating how to regenerate cdo interpolation weights.

commit e87b5a18f9dbad2230b9d3324f0c48a7b25d9b62
Author: wx20ha <[email protected]>
Date:   Wed May 27 02:01:57 2020 +0000

    JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera.

commit 70d71310132813c1066a9b0f881ef686602a23c4
Author: russ.treadon <[email protected]>
Date:   Tue May 26 20:39:33 2020 +0000

    Issue #1:  remove "_break" from commented out lines in config.anal and config.prep.  "_break" will cause failue if line active

commit 914cb8dff96e45e690c8e1a2932c8d846afb1655
Author: russ.treadon <[email protected]>
Date:   Tue May 26 20:37:27 2020 +0000

    Issue #1:  correct typo in parm/config/config.anal

commit 2e12e63b13533a8a1b741bf55cbbaba49beb14cc
Author: russ.treadon <[email protected]>
Date:   Tue May 26 19:18:57 2020 +0000

    Issue #1:  update config.anal logic to point ABIBF at the correct GDA directory

commit 38cd82133b64af289648ca5e88fde1ac3dcaeab0
Author: russ.treadon <[email protected]>
Date:   Tue May 26 18:04:59 2020 +0000

    Issue #1:  update config files

     * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612)

     * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post)

     * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error

commit 0dff61f103bab78f9d2426599f976dc318eff4e0
Author: fanglin.yang <[email protected]>
Date:   Mon May 25 03:08:27 2020 +0000

    modified:   config.fv3 to reduce tasks assigned to the WAVE component.  70 tasks at C768 is adequate for wave.

commit 20ef779fd90a267affc0e80ae1f8a3f64afd2f8d
Author: henrique.alves <[email protected]>
Date:   Fri May 22 19:52:55 2020 +0000

    Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera

commit e248236b233b6bcf2dc008006a82ccd459d7e3f3
Author: fanglin.yang <[email protected]>
Date:   Fri May 22 15:23:59 2020 +0000

    modified:   config.fcst to set
    if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then
    ...

    lheatstrg=".false."

commit 96460e6e5f4b09b9fd10d39550bf022dc62c37ab
Author: russ.treadon <[email protected]>
Date:   Fri May 22 13:02:06 2020 +0000

    Issue #1:  replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files

commit 7222f84041f2a2f221e85d6543657f229408328c
Author: fanglin.yang <[email protected]>
Date:   Thu May 21 14:09:36 2020 +0000

    modified:   checkout.sh to check out modle tag GFS.v16.0.4. changes include:
           1.  Remove constraints on mixing length and background diffusitivity over inversion layers on land
           2.  Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce
               cold bias in the lower tropospehre
           3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in
              the upper atmospehre.

commit 4fa08a77e59660f4b58279375a83d179c891b385
Author: fanglin.yang <[email protected]>
Date:   Wed May 20 01:20:21 2020 +0000

    modified:   HERA.env to add
        export CFP_MP="YES" # For analdiag with SLURM

commit 9f7df9d3552fd971cde09148bc392ad93bf104e0
Author: fanglin.yang <[email protected]>
Date:   Mon May 18 15:06:19 2020 +0000

    modified:   checkout.sh to check out upp_gfsv16_release.v1.0.8
       1) Add configuration for Orion.
       2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset.
       3) Remove SPFH at isobaric levels from pgrb2b dataset.

commit 5e4a1335ef3feb0242245b5661f22650a0a2e576
Author: Mallory Row <[email protected]>
Date:   Fri May 15 13:08:25 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2
jkhender added a commit to jkhender/global-workflow that referenced this issue Oct 21, 2020
@jkhender
Merged in global-workflow:port2orion branch
83eed3d 
Squashed commit of the following:

commit 636ded675b81b15e8b3af2a211edf44f17972cf0
Author: kate.friedman <[email protected]>
Date:   Tue Oct 20 19:23:16 2020 +0000

    Issue #1 - add wtime_fcst_gfs time of 4hrs for C384

commit 4007f116adcde8372e590489d0faa0181babbc15
Author: kate.friedman <[email protected]>
Date:   Tue Oct 20 18:29:15 2020 +0000

    Issue #1 - fix firstcyc queue bug in workflow_utils.py on WCOSS

commit ebdb058fd138a7aa408d69c967747686ea5b77d9
Author: kate.friedman <[email protected]>
Date:   Tue Oct 20 13:23:05 2020 -0500

    Issue #1 - resource updates from low res testing

    - set io_layout to "1,1" for low res gfs in config.fcst
    - set npe_wav[_gfs] to 140 for all resolutions, same wave grid
    - increase nth_fv3 to 4 for C192 and C384
    - set smaller walltime for gfsfcst when resolutions less than C768

commit 3f0ab6ff2dd4ca42a45e68972b1936d398b32097
Author: Kate.Friedman <[email protected]>
Date:   Tue Oct 20 17:55:18 2020 +0000

    Issue #1 - increase C768 npe_eobs to 200 for Hera nodes with less memory

commit d5b69c49ddbd03982db79f09707a49d01ef0b443
Merge: 4ebdd230 794e6655
Author: Kate.Friedman <[email protected]>
Date:   Tue Oct 20 16:56:27 2020 +0000

    Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion

    * origin/release/gfsv16.0.0:
      Issue #1 - pull in corrected npe_eobs values in config.resources
      Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support

commit 4ebdd230c121a3c839829aa4ef855d80eb462549
Author: Kate.Friedman <[email protected]>
Date:   Tue Oct 20 16:53:46 2020 +0000

    Add UPP netcdf module library load to HERA.env to resolve runtime netcdf version mismatch

commit 794e6655cb227973e47b2373d0e4c97bf297479e
Author: kate.friedman <[email protected]>
Date:   Tue Oct 20 16:45:58 2020 +0000

    Issue #1 - pull in corrected npe_eobs values in config.resources

commit 1d0cad425b1e163377bba8ace6622bbbb2d81de0
Author: Kate.Friedman <[email protected]>
Date:   Mon Oct 19 19:24:55 2020 +0000

    Issue #1 - add parm mon folder to ignore list and move parm section of ignore list up

commit d632c87a8f2ce85d54fa45da14aa09f91a0ec680
Author: Kate.Friedman <[email protected]>
Date:   Mon Oct 19 19:20:31 2020 +0000

    Issue #1 - add FDATE to config.base

commit 22d4118f4bc7853fa81f6505fd9aaf5bc6dab4f8
Author: Kate.Friedman <[email protected]>
Date:   Mon Oct 19 19:12:29 2020 +0000

    Issue #1 - save GFSv16 hand-off resource settings into new static nco configs

commit 6fd73d7fdf40b291ff49193b606538b540e46139
Author: Kate.Friedman <[email protected]>
Date:   Mon Oct 19 19:11:37 2020 +0000

    Issue #1 - new FV3 tag that builds on Hera/Orion and update for building/running high res system on Hera

commit 484550c13d8ef957478f20afd6e722f7f610bb8f
Author: kate.friedman <[email protected]>
Date:   Fri Oct 16 15:40:35 2020 +0000

    Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support

commit 58dcf6d961f7478fec64a850e7bcd19ffd8f3741
Author: kate.friedman <[email protected]>
Date:   Thu Oct 15 15:08:38 2020 -0500

    Update .gitignore for script renaming and removed external files

commit e3f8df65082853baa5a22ed3b242efdae66d40ba
Author: kate.friedman <[email protected]>
Date:   Thu Oct 15 11:59:58 2020 -0500

    Add wave env updates into ORION.env, increase waveinit tasks, and update resources for analysis and efcs walltimes

commit e5e7cf1ea61d99080ec95b446c1bee45a57321a3
Merge: a1a7ac94 4b2d26db
Author: kate.friedman <[email protected]>
Date:   Tue Oct 13 14:25:56 2020 -0500

    Sync merge with release/gfsv16.0.0 branch

commit 4b2d26db3b9b66ecfdd4756bfcddb6e16f255b03
Author: kate.friedman <[email protected]>
Date:   Tue Oct 13 17:41:24 2020 +0000

    Issue #1 - adjust WAFS dependencies to wait for f036 post output

commit 9ef1999270e05c1ff5bae5ea5f737d9474c98b3d
Author: kate.friedman <[email protected]>
Date:   Fri Oct 9 19:27:09 2020 +0000

    Issue #1 - adding release notes for GFSv16

commit bf21010067bf7587be93229a979da347278fd7eb
Merge: d5e8be98 31563a59
Author: kate.friedman <[email protected]>
Date:   Fri Oct 9 18:15:36 2020 +0000

    Merge remote-tracking branch 'origin/feature/gfsv16b' into release/gfsv16.0.0

commit d5e8be989d1f2f45095fea17fcb5ed1385759e89
Merge: 7728ce18 561e1953
Author: kate.friedman <[email protected]>
Date:   Fri Oct 9 18:13:53 2020 +0000

    GFSv16 package changes from feature/gfsv16b before final wave updates

commit 31563a5982b26d7441e2673d68d1d1dac4fe231d
Merge: bf27d0b4 6edf0f7b
Author: Kate Friedman <[email protected]>
Date:   Thu Oct 8 19:03:10 2020 -0400

    Merge pull request #158 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen

    Feature/gfsv16 wave prdgen

commit 6edf0f7b396587c4e014ba08fb6199461a970c41
Merge: 896ba312 bf27d0b4
Author: wx21rph <[email protected]>
Date:   Thu Oct 8 22:54:12 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16_wave_prdgen

    Generating awips files with masks and elimination wmo headers for Arctic Ocean

commit 896ba31270185a1edaa3c6d32ec3c4295badf136
Author: wx21rph <[email protected]>
Date:   Thu Oct 8 22:50:48 2020 +0000

    Issue #94 producing awips files with masks and deleting wmo headers for arctic ocean

commit bf27d0b4de54e6b873e20d784012c93384ad2358
Merge: 561e1953 959dac21
Author: Kate Friedman <[email protected]>
Date:   Thu Oct 8 18:23:17 2020 -0400

    Merge pull request #157 from JessicaMeixner-NOAA/feature/gfsv16b-wavegrids

    Adding wave grids to grib interpolation

commit 959dac21e98ff96130f8e8c90a4b94b18c76f4f3
Merge: 50f33dd9 561e1953
Author: jessica.meixner <[email protected]>
Date:   Thu Oct 8 21:57:29 2020 +0000

    Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wavegrids

commit 50f33dd92e1f78f8879cb037652b1b4393511842
Author: jessica.meixner <[email protected]>
Date:   Thu Oct 8 21:44:23 2020 +0000

    updates to add glo_30m to the created grib files for waves
    for awips processing

commit 561e19532e68aaff69f5b2568c3ebb2a536b7149
Merge: 7421143a 853a4619
Author: Kate Friedman <[email protected]>
Date:   Thu Oct 8 16:10:32 2020 -0400

    Merge pull request #156 from lgannoaa/feature/gfsv16b

    Modify gfs/gdas post job to 20 minutes in wall clock.

commit 853a46199f2c59ff84422024b55a70e2679213ee
Author: Lin.Gan <[email protected]>
Date:   Thu Oct 8 19:55:56 2020 +0000

    Modify gfs/gdas post job to 20 minutes in wall clock.

commit 7421143a169264c8480aea5970a6d67f9bc56c43
Author: kate.friedman <[email protected]>
Date:   Thu Oct 8 18:40:28 2020 +0000

    Issue #1 - update link_fv3gfs.sh to point to newly frozen fix_nco_gfsv16 FIX_DIR

commit 8ac89aee11e7099303600ba6df8e3d4bf4d70a66
Merge: db9fa173 eb4ad338
Author: Kate Friedman <[email protected]>
Date:   Thu Oct 8 14:37:11 2020 -0400

    Merge pull request #155 from lgannoaa/feature/gfsv16b

    Further ecflow updates

commit eb4ad338dfa1f51c9ec4ada58601ffd3f6894d7f
Author: Lin.Gan <[email protected]>
Date:   Thu Oct 8 17:58:29 2020 +0000

    Modify two wafs jobs trigger as:
      jgfs_atmos_wafs_grib2          trigger ../../post/jgfs_atmos_post_f000 == complete
      jgfs_atmos_wafs_grib2_0p25     trigger ../../post/jgfs_atmos_post_f036 == complete

commit 589b1df4d5637f6e4521e79d4f286a463da477f3
Merge: 445a16b0 db9fa173
Author: Lin.Gan <[email protected]>
Date:   Thu Oct 8 17:46:36 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b

commit db9fa173028efd7ed796024a2f4753629e91922b
Author: kate.friedman <[email protected]>
Date:   Thu Oct 8 16:01:50 2020 +0000

    Issue #1 - update WAFS tag to gfs_wafs.v6.0.10 and change WAFS job dependencies

commit 2a0c9739631ae4b1305a2653a1783cce287aeb96
Author: kate.friedman <[email protected]>
Date:   Thu Oct 8 15:12:10 2020 +0000

    Issue #1 - update config.fv3 and config.resources with v16rt2 values

commit b5fbac7affc200e2c9a420f81615d0ae80b1dacf
Merge: 5dac3374 6402996f
Author: Kate Friedman <[email protected]>
Date:   Thu Oct 8 10:36:43 2020 -0400

    Merge pull request #154 from CoryMartin-NOAA/bugfix/eobs_resources

    Change config.resources for eobs for low resolution cases

commit 5dac33742edd372a4e9b08c0b3029bb928cc569b
Author: kate.friedman <[email protected]>
Date:   Thu Oct 8 14:35:23 2020 +0000

    Issue #1 - update gfs_util modulefiles

commit 6402996f0cb5f787d04ac08efc8dd92dca767618
Author: CoryMartin-NOAA <[email protected]>
Date:   Thu Oct 8 14:28:02 2020 +0000

    Change config.resources for eobs for low resolution cases

commit aae0912df6b1398cdad563495475916970590b1a
Author: kate.friedman <[email protected]>
Date:   Thu Oct 8 13:51:06 2020 +0000

    Issue #1 - update to fbwndgfs modulefiles for WCOSS-Dell and WCOSS-Cray

commit 244e91ca0caf433f82e6e709413db4bac40aade2
Merge: 3bdda7fb 3b051e93
Author: Kate Friedman <[email protected]>
Date:   Thu Oct 8 09:40:24 2020 -0400

    Merge pull request #153 from JessicaMeixner-NOAA/bugfix/wavedependency

    update wave post pnt dependency

commit 5962e117f93f1fc9f040f97b9446bcf9dc1138e1
Author: jessica.meixner <[email protected]>
Date:   Thu Oct 8 11:24:41 2020 +0000

    updates to parm to reduce the number of wave variables
    changes to the config so that wave models are interpolated
    to the multi_1 masked files for the regional output grids

commit 445a16b030384a84c60318600a5ccdeeccbd063b
Author: Lin.Gan <[email protected]>
Date:   Thu Oct 8 04:03:32 2020 +0000

    Modify module for each job to match implementation package change
    Modify two wafs jobs trigger
    Modify wall clock and resource for running jobs in NCO
    Modify obsproc package location

commit 3b051e93adf60717f446564a08e5f3a11fd742af
Author: jessica.meixner <[email protected]>
Date:   Thu Oct 8 01:10:14 2020 +0000

    add a dependency for the wavepostpnt on wavepostbndpnt for just gfs
    as this job does not exist for gdas

commit 3bdda7fb50676d25dbc03fffa739889a141b913c
Author: kate.friedman <[email protected]>
Date:   Wed Oct 7 17:36:27 2020 +0000

    Issue #1 - update WAFS tag to gfs_wafs.v6.0.9

commit 3a700dbda1d6f6ef965cf2fbf30cfdf6cb2a8fe2
Author: kate.friedman <[email protected]>
Date:   Wed Oct 7 14:36:02 2020 +0000

    Issue #1 - remove POE/BACK block from config.prep and set POE=YES/BACK=off as defaults in env/WCOSS_DELL_P3.env prep section

commit 8cc7d57be3c1d08529dd37633a83a6ffa8ca94b3
Author: kate.friedman <[email protected]>
Date:   Wed Oct 7 14:30:19 2020 +0000

    Issue #1 - remove unneeded DMPDIR and ICSDIR from config.base.nco.static

commit 343ea3daece25bfeb1f8e870d361a364d1c228f0
Merge: 22f2a407 b57cd17d
Author: Kate Friedman <[email protected]>
Date:   Wed Oct 7 09:47:18 2020 -0400

    Merge pull request #152 from JessicaMeixner-NOAA/feature/addwavedependency

    for rocoto add a dependency to wavepostpnt job on wavepostbndpnt

commit b57cd17dafee5415b4955fcd8bbc76eb27e88740
Author: jessica.meixner <[email protected]>
Date:   Wed Oct 7 13:19:50 2020 +0000

    for rocoto add a dependency to wavepostpnt job on wavepostbndpnt
    so that both jobs will not run at the same time which will
    slow both jobs down. This is the reason for the dependency, otherwise
    there is not a "true" dependency between the jobs

commit 22f2a407e853b7d5342ee52faa53affdb25ac44e
Author: kate.friedman <[email protected]>
Date:   Tue Oct 6 20:38:42 2020 +0000

    Issue #1 - return POE=YES and BACK=off setting for prep on WCOSS_DELL_P3

commit c530316d07ae129f26907b2cae2079b55b37d0c2
Author: kate.friedman <[email protected]>
Date:   Tue Oct 6 19:32:52 2020 +0000

    Issue #1 - remove hardcoded POE and BACK values from config.prep

commit aece8baef1cd2f46991cb1235c315e228f7b661e
Author: kate.friedman <[email protected]>
Date:   Tue Oct 6 19:02:37 2020 +0000

    Issue #1 - move ABIBF, AHIBF, and HDOB pointers into RUN_ENVIR=emc block

commit c75766cd176802242f003ad3612aadff02563fb2
Author: kate.friedman <[email protected]>
Date:   Tue Oct 6 18:17:35 2020 +0000

    Issue #1 - update config.fv3 based on real-time parallel

commit f79ec7e0ce356213681e8c87655bb3fb66df16f1
Author: kate.friedman <[email protected]>
Date:   Tue Oct 6 17:40:16 2020 +0000

    Issue #1 - update prep job resources

commit 577b060e63b1f47c77fd8e7a2d1b7f111fe6fcd4
Author: kate.friedman <[email protected]>
Date:   Tue Oct 6 16:08:07 2020 +0000

    Issue #1 - update g2tmpl module load in modulefiles/module_base.wcoss_dell_p3

commit c28d8cea538cdcdfc8557cb71120436edd86e313
Merge: 6197bc62 1b79fd35
Author: Kate Friedman <[email protected]>
Date:   Tue Oct 6 11:16:32 2020 -0400

    Merge pull request #150 from NOAA-EMC/feature/gfsv16b_updates

    nwtest module library and tag updates

commit 1b79fd35e79fe7d0bc8eb460dfc08d44261fc470
Author: kate.friedman <[email protected]>
Date:   Tue Oct 6 14:34:26 2020 +0000

    Issue #1 - config updates from real-time parallel

commit 11ca41294784278dc425e1ca1320253239a85d40
Author: kate.friedman <[email protected]>
Date:   Tue Oct 6 13:44:29 2020 +0000

    Issue #1 - remove unneeded line in vrfy.sh and update link_fv3gfs.sh for UFS_UTILS execs

commit 97e9d7f2d75bb7167b56aaa70c53f53e4a189192
Author: kate.friedman <[email protected]>
Date:   Mon Oct 5 18:50:40 2020 +0000

    Issue #1 - update GSI tag to gfsda.v16.0.0

commit f6689d462ba4528c99a2a331ae8890759ba25ecb
Merge: 01e36208 8048cd02
Author: Kate Friedman <[email protected]>
Date:   Mon Oct 5 14:05:27 2020 -0400

    Merge pull request #149 from GuangPingLou-NOAA/feature/gfsv16b

    Add 6 bufr stations to the bufr sounding output

commit 01e362089fbf71a962fcdfc7db48f243b74e2e50
Author: kate.friedman <[email protected]>
Date:   Mon Oct 5 17:09:04 2020 +0000

    Issue #1 - update component tags and modulefiles for nwtest lib updates, remove unneeded module load and modulefile from downstream wave job rocoto scripts

commit 6197bc623013d7fca82c556f3fb51c15832578b3
Merge: 451669a8 cd86b0ed
Author: Kate Friedman <[email protected]>
Date:   Mon Oct 5 10:47:08 2020 -0400

    Merge pull request #148 from NOAA-EMC/feature/gfsv16b_updates

    Updates to optimize wave post jobs

commit cd86b0eddd305483007e1381d0d4a7256fa05680
Merge: 9b32bf0c 95bc516a
Author: kate.friedman <[email protected]>
Date:   Mon Oct 5 14:16:50 2020 +0000

    Merge branch 'feature/gfsv16b_updates' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_updates

commit 9b32bf0c83ac9eb38f8d3b1b405b704b26c6592a
Author: kate.friedman <[email protected]>
Date:   Mon Oct 5 14:16:21 2020 +0000

    Issue #1 - adjust error handling in wave rocoto job scripts

commit 8048cd0285c8b9c8606673b04d60e8a137fe89b8
Author: Guang.Ping.Lou <[email protected]>
Date:   Sat Oct 3 00:45:21 2020 +0000

    issue #142 generate station i,j grid

commit e4e4b84235344b6da44ae732020115581abb9afe
Author: Guang.Ping.Lou <[email protected]>
Date:   Sat Oct 3 00:45:00 2020 +0000

    issue #142 generate station i,j grid

commit 68e5fd7279bf1f9c30fa4daa16bf44795f5e91f6
Author: Guang.Ping.Lou <[email protected]>
Date:   Sat Oct 3 00:44:46 2020 +0000

    issue #142 generate station i,j grid

commit fcf1f415333d53fe3a97546d4a16de55d6e1d703
Author: Guang.Ping.Lou <[email protected]>
Date:   Sat Oct 3 00:43:49 2020 +0000

    issue #142 add 6 bufr station data

commit 026b4e0a2ec1da85a3cc8c73053dd85fd4d56439
Author: Guang.Ping.Lou <[email protected]>
Date:   Sat Oct 3 00:42:58 2020 +0000

    issue #142 add 6 bufr stations for Thailand TMD

commit faaf8041faeecbc4c39cb37782bbe291ebd7a011
Author: Guang.Ping.Lou <[email protected]>
Date:   Sat Oct 3 00:41:09 2020 +0000

    issue #145 change dev path to prod for parallel netcdf modules

commit e6ba71f58ab5e88957f12fc742fded77a58f75d2
Author: Guang.Ping.Lou <[email protected]>
Date:   Sat Oct 3 00:40:34 2020 +0000

    issue #145 change dev path to prod for parallel netcdf modules

commit 95bc516af61e4aa35997f45ea625773f947c2125
Merge: 28904cdd a4d0e4d7
Author: Kate Friedman <[email protected]>
Date:   Fri Oct 2 15:34:48 2020 -0400

    Merge pull request #143 from JessicaMeixner-NOAA/feature/gfsv16b-wave-byhr

    optimize wave post and EE2

commit 451669a8f8d7778addd7bbd090d2fe71c9a6e3f8
Merge: 340f849f 28904cdd
Author: Kate Friedman <[email protected]>
Date:   Fri Oct 2 15:32:41 2020 -0400

    Merge pull request #144 from NOAA-EMC/feature/gfsv16b_updates

    Issue #1 - updates for modules and small fixes

commit 28904cddca4d3e432f6b155ae018b6a081aea82e
Author: kate.friedman <[email protected]>
Date:   Fri Oct 2 19:05:10 2020 +0000

    Issue #1 - updates for modules and small fixes

    - fix to run ens_tracker without tclogg module in modulefiles/module_base.wcoss_dell_p3
    - fix to sorc/syndat_qctropcy.fd/qctropcy.f for compile warning
    - fix to gfswaveawipsbulls dependency in setup scripts
    - update to bufr/11.3.0 from bufr/11.2.0 in modulefiles
    - add override ability for POE for prep jobs in env/WCOSS_DELL_P3.env

commit a4d0e4d7a063c14f711bee5ef32cd0b183121ea7
Author: jessica.meixner <[email protected]>
Date:   Fri Oct 2 18:59:22 2020 +0000

    reverting changes to configs that were not intented to be committed

commit 2e6ba320b39b50030c8097a09700e2eb81cb724a
Merge: cb7b27c9 340f849f
Author: jessica.meixner <[email protected]>
Date:   Fri Oct 2 18:08:59 2020 +0000

    Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave-byhr

commit cb7b27c96c59388e39283b2c01aff2da92fcedbf
Author: jessica.meixner <[email protected]>
Date:   Fri Oct 2 18:08:16 2020 +0000

    fix resource time estimates

commit d51a260adc0fb003730ae4090c528856ac18be93
Author: jessica.meixner <[email protected]>
Date:   Fri Oct 2 18:04:50 2020 +0000

    bug fix in exgfs_wave_post_pnt.sh

commit 340f849f1cad6b562a941f15318eaf2d050743f1
Merge: 897286fb d5457ec1
Author: Kate Friedman <[email protected]>
Date:   Fri Oct 2 12:00:00 2020 -0400

    Merge pull request #141 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen

    Updates to downstream wave jobs

commit 2b2635d441beb988e6c09a329eb80e1d519266ee
Author: jessica.meixner <[email protected]>
Date:   Fri Oct 2 14:38:06 2020 +0000

    update resources and trigger from 192->180

commit 56193a6bf9e8942edd54b7b7078143a3c91bc77f
Author: jessica.meixner <[email protected]>
Date:   Fri Oct 2 14:10:05 2020 +0000

    last of EE2 changes

commit ad5dcff885c3690f991936412453506deed543a6
Author: jessica.meixner <[email protected]>
Date:   Fri Oct 2 14:01:25 2020 +0000

    updates for EE2 from waves

commit d5457ec1e15e670677eea3171e68df20e4d6ca53
Merge: 4c488d30 897286fb
Author: wx21rph <[email protected]>
Date:   Thu Oct 1 19:02:34 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16_wave_prdgen

    Issue #94 Adding error capture in the Jjobs

commit 4c488d30947cf556d6cbf05d570fa6c41ae59ffb
Author: wx21rph <[email protected]>
Date:   Thu Oct 1 18:45:21 2020 +0000

    Issue #94 fix for failing silently

commit 897286fbdfea6a8d5765f9d89ab7c586bcadb201
Author: kate.friedman <[email protected]>
Date:   Thu Oct 1 18:14:37 2020 +0000

    Issue #1 - update WAFS tag to gfs_wafs.v6.0.8

commit e133c5d1d509781824140f5ec1d302502394dc89
Merge: a25a7dea 545742c4
Author: Kate Friedman <[email protected]>
Date:   Thu Oct 1 09:13:05 2020 -0400

    Merge pull request #140 from lgannoaa/feature/gfsv16b

    Update ecflow scripts for GFSv16

commit 8f79b61ab8b0c7ed17b707eaae7736a3aedd33ef
Merge: cc9e98a6 a25a7dea
Author: wx21rph <[email protected]>
Date:   Wed Sep 30 16:09:27 2020 +0000

    Issue #94 solving conflicts

commit cc9e98a6d03fa422f5080626da02426c174e2b45
Author: wx21rph <[email protected]>
Date:   Wed Sep 30 15:23:29 2020 +0000

    Issue #94 add native grids as default grids

commit 545742c42c635d24c360a8c9b0902483cab66359
Merge: 65ba88e5 a25a7dea
Author: Lin.Gan <[email protected]>
Date:   Wed Sep 30 14:05:40 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b

commit a25a7deac9053dbb2ce119e3754f32c2d3f225b9
Author: russ.treadon <[email protected]>
Date:   Tue Sep 29 22:46:35 2020 +0000

    Issue #1:  update name of ncdiag executable and source code directory to be conistent

commit 2eab17ce11be26c7d113e16e3a9159e0e6395cac
Author: jessica.meixner <[email protected]>
Date:   Tue Sep 29 19:05:21 2020 +0000

    cleaning up the rearranged scripts

commit 65ba88e5ad97a560e4b1c6dd7a3568185e5ccbd9
Author: Lin.Gan <[email protected]>
Date:   Tue Sep 29 18:22:29 2020 +0000

    Jobs were tested with PDY 20200925, code managers from post, gempak, wave, and post process certified the test run result.

    This merge included an update from high watermark testing (tested by gfs team using devonprod) results impact the following jobs:
    jgfs_atmos_analysis.ecf
    jgfs_forecast.ecf
    jgdas_atmos_analysis.ecf
    jgdas_enkf_update.ecf
    jgdas_enkf_ecen.ecf

commit d86cfee7befd1d97c9ff6fd8cb58d2f9c9f9f1d8
Merge: abe24e27 69bdae3e
Author: jessica.meixner <[email protected]>
Date:   Mon Sep 28 18:47:23 2020 +0000

    Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave-byhr

commit 121bafee1e227119ddcba233da5b59af242128e4
Merge: 0d7ba5fb 69bdae3e
Author: Lin.Gan <[email protected]>
Date:   Mon Sep 28 18:42:03 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b

commit 95f03be594d2944f14f0f6baa600bae27691e891
Merge: 7278b067 69bdae3e
Author: Guang.Ping.Lou <[email protected]>
Date:   Mon Sep 28 17:30:03 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b

commit 69bdae3e7cdb35db28d899b7384daab48e888eb4
Author: russ.treadon <[email protected]>
Date:   Mon Sep 28 16:58:47 2020 +0000

    Issue #1:  update parm/config.vrfy to define VSDBJOBSH (used by jobs/rocoto/vrfy.sh)

commit abe24e279666ecccb27fb875322373b4920a66d3
Merge: d4ebc2e6 ef6d2c5c
Author: jessica.meixner <[email protected]>
Date:   Fri Sep 25 21:56:05 2020 +0000

    Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave-byhr

    Conflicts:
    	parm/config/config.resources

commit 0d7ba5fb286ac280efda5510a23e2dbf625ba19a
Author: Lin.Gan <[email protected]>
Date:   Fri Sep 25 21:34:42 2020 +0000

    Code manager indicated all wafs jobs wall clock is 30 mins.
    Code manager indicated job card for scripts/gfs/atmos/gempak/jgfs_atmos_pgrb2_spec_gempak.ecf need to be changed

commit 998228f94e36f63a0586f431fbcd32fb646d0ee6
Author: Lin.Gan <[email protected]>
Date:   Fri Sep 25 21:02:57 2020 +0000

    The EMC realtime parallel does not use operational job settings. Ecflow job card roll back the setting from module_used_gfs-16_job google sheet document.

commit 0e700ef159835510b3e3d02d27448826cb8dd914
Merge: 9b8e2f3a ef6d2c5c
Author: Lin.Gan <[email protected]>
Date:   Fri Sep 25 19:49:13 2020 +0000

    Bring change from upstream_feature_gfsv16b

commit ef6d2c5ca3243c579615ee47bcef494bc42f335e
Author: kate.friedman <[email protected]>
Date:   Fri Sep 25 16:17:05 2020 +0000

    Update GLDAS tag to gldas_gfsv16_release.v1.10.0

commit a9f8cb2616259b5610b9d101b5f9e50ea3013a2e
Author: kate.friedman <[email protected]>
Date:   Fri Sep 25 16:06:11 2020 +0000

    Update gfswafs job to run with loop over fcsthrs

commit 8187a31eca915184a43c0649db0170271b4ee6a9
Author: russ.treadon <[email protected]>
Date:   Fri Sep 25 14:06:43 2020 +0000

    Issue #1:  update vrfy.sh to submit vsdb processing as separate job (only on WCOSS_DELL_P3)

commit 320f33033ac0f6f6919bd933c0a18d2a4088fcd6
Author: Roberto Padilla <[email protected]>
Date:   Thu Sep 24 23:29:10 2020 +0000

    Issue #94 add /fakedbn to run DBN_alerts

commit 0d2c6280ac80d944ea7e9e2700430f42d24b3867
Merge: f9876550 83655eda
Author: Kate Friedman <[email protected]>
Date:   Thu Sep 24 17:17:17 2020 -0400

    Merge pull request #139 from NOAA-EMC/feature/gfsv16b_jobname

    Update script names to match ecflow convention

commit 83655eda76114414f39c5e32a61b93186b42ac3c
Author: kate.friedman <[email protected]>
Date:   Thu Sep 24 18:30:00 2020 +0000

    Update config.awips for newly named JJOB scripts

commit 2f5fb01d02516a6fe72664c54cd97a5585f99a3f
Author: kate.friedman <[email protected]>
Date:   Thu Sep 24 18:20:14 2020 +0000

    Update WAFS jobs/rocoto scripts to use new JJOB names

commit 9b8e2f3a2b782c9dc602c620ce7efc2f7210d6dd
Author: lin.gan <[email protected]>
Date:   Thu Sep 24 15:30:45 2020 +0000

    Making J-Job naming change accourding to code manager.
    Remove temp files

commit ff50171eea7b99c7e89b0b773824464da5fe949f
Author: kate.friedman <[email protected]>
Date:   Thu Sep 24 14:24:23 2020 +0000

    Update post.sh UPP JJOB script name to submit

commit 0eb85537f30b1c89ed160374e2e7f8470d7a20d0
Author: lin.gan <[email protected]>
Date:   Wed Sep 23 18:42:52 2020 +0000

    Modify each ecflow script with old j-job name for test.

    Modify the following in each definition file.
    - ecen family require new extern from previous cycle
    - Job jgfs_atmos_npoess_pgrb2_0p5deg trigger changed to be (requested
      from code manager):
        1. jgfs_atmos_post_manager:release_post180
    - Job jgdas_enkf_select_obs trigger changed to be:
        1. previous cycle enkf post complete
        2. current cycle jgdas_atmos_analysis_calc complete (new job)

    Tested as of 9/21/2020 before production switch with following condition:
    1. Known issue in wafs gcip. Job failed. Waiting for code manager to
    fix.
    2. obsproc testing still on going.
    3. Code manager still updating j-job and ex-script names. Testing in
    hold until package is ready and WCOSS availability.

commit 9fb09168c9aa2057a0c919f66bdf43b8e4e3a545
Author: kate.friedman <[email protected]>
Date:   Wed Sep 23 15:41:20 2020 +0000

    Update config.base.nco.static with config.base.emc.dyn changes

commit a1a7ac9495446976b9e9ccae48a39bb4b868c19b
Merge: ee4bc2b7 70f5064e
Author: kate.friedman <[email protected]>
Date:   Wed Sep 23 10:19:52 2020 -0500

    Issue #5 - sync merge with feature/gfsv16b_jobname

commit 70f5064e8e345e073d9c0dc7da812d0a2a51d91d
Author: kate.friedman <[email protected]>
Date:   Wed Sep 23 14:00:07 2020 +0000

    Script name updates for sfc_prep and tracker

commit 4346c03a1aaf1cf1429a59b6a5682065c2c6e51b
Author: kate.friedman <[email protected]>
Date:   Wed Sep 23 13:51:44 2020 +0000

    Name change for tropcy scripts and update WAFS tag

commit 0ef9e49d9752643fa3ebdc8fc0ef9768968836d2
Author: kate.friedman <[email protected]>
Date:   Tue Sep 22 17:50:35 2020 +0000

    Fixing spelling mistake in config.gldas

commit 9fdb9eef052586c36abf034cd335ec649bf9cf19
Merge: 869dfa35 f9876550
Author: lin.gan <[email protected]>
Date:   Tue Sep 22 17:13:20 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b

commit 4b1affe520e0610c14168ccba4ef3439a3b7a966
Author: BoiVuong-NOAA <[email protected]>
Date:   Tue Sep 22 16:39:39 2020 +0000

    Updated drivers and release notes

commit 2ed155ccee58d3cc72d7fdf6577806c7a14e58e9
Author: BoiVuong-NOAA <[email protected]>
Date:   Tue Sep 22 15:55:01 2020 +0000

    Updated scripts

commit 6d171bc82f2c63f146fe1cf760c350b2effc20e6
Author: Wen Meng <[email protected]>
Date:   Tue Sep 22 15:26:37 2020 +0000

    Update Externals.cfg with new UPP tag upp_gfsv16_release.v1.0.16.

commit 4b4069b715c9ebcc5122b79a1508f70ad7c78b46
Author: Wen Meng <[email protected]>
Date:   Tue Sep 22 14:59:24 2020 +0000

    1)Update sorc/checkout.sh with new UPP tag upp_gfsv16_release.v1.0.16.
    2)Update sorc/link_fv3gfs.sh with new file name convention for jjob and ex-script of post processing part.

commit c071ac0159cce98ea98ce5fa8dc5337b284ad136
Author: BoiVuong-NOAA <[email protected]>
Date:   Tue Sep 22 14:48:45 2020 +0000

    Updated jobs name

commit ea13d0c9146457aadd65d567fda794beeeef6c7d
Author: kate.friedman <[email protected]>
Date:   Tue Sep 22 14:27:47 2020 +0000

    Update EMC_verif-global tag to verif_global_v1.11.0

commit 92e69985706cf62cdd7b383fd45c4cd50f937053
Author: kate.friedman <[email protected]>
Date:   Tue Sep 22 14:15:24 2020 +0000

    Rename scripts to match ecf script naming convention. Add SENDDBN and DBNROOT. Update GLDAS tag.

commit 37ae040a0f21ec344228128e3e79910059c3b734
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 22 04:30:58 2020 +0000

    In anticipating changes from the GLDAS repo : renaming JGDAS_GLDAS to JGDAS_ATMOS_GLDAS, and exgdas_gldas.sh to exgdas_atmos_gldas.sh

    modified:   driver/gdas/test_gdas_gldas.sh jobs/rocoto/gldas.sh parm/config/config.gldas sorc/link_fv3gfs.sh

commit c58b93a61f77d65f042f8226445163029ebd9f8d
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 22 04:06:06 2020 +0000

     	renamed:    jobs/JGFS_POSTSND -> jobs/JGFS_ATMOS_POSTSND
     	renamed:    scripts/exgfs_postsnd.sh -> scripts/exgfs_atmos_postsnd.sh
     	modified:   docs/archive/README_bufr
     	            driver/product/run_postsnd.sh
     	            driver/product/run_postsnd.sh.cray
     	            driver/product/run_postsnd.sh.dell
     	            driver/product/run_postsnd.sh.hera
     	            driver/product/run_postsnd.sh.jet
     	            parm/config/config.postsnd

commit bec1b83027e162e4c083464d2cdb3fbdbd5168e8
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 22 03:51:02 2020 +0000

    renamed:    scripts/exglobal_fcst_nemsfv3gfs.sh -> scripts/exglobal_forecast.sh
    and modified  jobs/JGLOBAL_FORECAST parm/config/config.fcst

commit d4ebc2e6798d13af1ced8a51899e80e209a13c71
Author: jessica.meixner <[email protected]>
Date:   Mon Sep 21 18:28:15 2020 +0000

    updates for optimizing point jobs

commit 7278b0677be6168a9695fca6c2e08154d9af0f63
Merge: 928e3e4b f9876550
Author: Guang Ping Lou <[email protected]>
Date:   Fri Sep 18 18:35:06 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b

commit f98765509cc7fc0e7b8979abfc73dbc5db035825
Author: kate.friedman <[email protected]>
Date:   Fri Sep 18 16:58:57 2020 +0000

    Issue #1 - update SEND variables and add DBNROOT to base configs and add check to build_enkf_chgres_recenter_nc.sh for GSI build

commit e9e8d63db112ab8f5e15de08a1714cfebd386a2a
Author: kate.friedman <[email protected]>
Date:   Fri Sep 18 15:18:48 2020 +0000

    Issue #1 - update to UFS_UTILS ops-gfsv16.0.0 tag

commit 3df7625d74012552cf69fcfe7c0b5384b860c999
Author: kate.friedman <[email protected]>
Date:   Fri Sep 18 13:25:00 2020 +0000

    Issue #1 - fix to link_fv3gfs.sh for new GLDAS tag

commit 928e3e4b53e969f8ecdd3544c3bf2668b57c66b3
Merge: dd081426 1fc7bde9
Author: Guang Ping Lou <[email protected]>
Date:   Thu Sep 17 20:00:17 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b

commit dd08142664e5695e3f27890c0560f0b5e48841a8
Author: Guang Ping Lou <[email protected]>
Date:   Thu Sep 17 19:57:20 2020 +0000

    Issue #131 Unify dbn_alert path

commit 1fc7bde9b7f99da7d0430387ec4a547e73ea641b
Author: russ.treadon <[email protected]>
Date:   Thu Sep 17 19:37:41 2020 +0000

    Issue #1:  update to UPP tag "upp_gfsv16_release.v1.0.15"

commit 9eae5a8af39c4a8c5d47c16725ccc62b5d3c60cf
Merge: ce1c7825 99c15099
Author: Kate Friedman <[email protected]>
Date:   Thu Sep 17 13:46:58 2020 -0400

    Merge pull request #135 from KateFriedman-NOAA/feature/gfsv16b-down

    Small updates to downstream jobs and tag updates

commit 99c1509923399845ba794cb8fad981d12935dd03
Author: kate.friedman <[email protected]>
Date:   Thu Sep 17 13:13:14 2020 +0000

    Fix for running prep on Hera

commit 869dfa350a013f66e5fdca66aa9b1f0192c1570c
Author: lin.gan <[email protected]>
Date:   Wed Sep 16 21:25:10 2020 +0000

    ecflow full day cycle included

commit 515eeb5c6b188e873b304619c40c9a6efcfd9046
Author: kate.friedman <[email protected]>
Date:   Wed Sep 16 19:53:26 2020 +0000

    Update WAFS tag to gfs_wafs.v6.0.6

commit 89f138af89814c865331b9aefcb8450b5915d1f7
Author: kate.friedman <[email protected]>
Date:   Wed Sep 16 16:33:21 2020 +0000

    Small updates:
    - new UPP tag
    - new GLDAS tag
    - new WAFS tag
    - new module for WAFS
    - EE2 updates to awips scripts
    - added WAFS to archival
    - break downstream and WAFS archival into separate gfs_downstream tarball
    - update gfsarch dependencies to wait for all wavepost jobs to complete

commit 9930e8770a2940c46e22b243c11d2ac14f95611a
Merge: b3433d59 ce1c7825
Author: lin.gan <[email protected]>
Date:   Wed Sep 16 13:25:36 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b

commit b100c22b5bfcf455ff3ff15bd71f0ddc15f1d071
Author: Guang Ping Lou <[email protected]>
Date:   Tue Sep 15 18:57:21 2020 +0000

    Issue #131 reduce scripts output to logfile

commit 6866e6cd2ef1e76dd58de27ebb7d68b2bd3fa304
Author: Guang Ping Lou <[email protected]>
Date:   Tue Sep 15 18:55:03 2020 +0000

    Issue #131 added a path to DBNROOT

commit b3433d59d1d5b75f015b0e044a8b4e03d55407f7
Author: Lin.Gan <[email protected]>
Date:   Tue Sep 15 17:59:32 2020 +0000

    Adding wafs wave and downstream jobs

commit 4c7ccd466bc71b3e73194ffc48385225e01e7c0c
Author: Jessica.Meixner <[email protected]>
Date:   Tue Sep 15 15:29:44 2020 +0000

    updates for by hour post

commit ce1c78255f4bf8f40c2f116547062c7f1b3832c5
Author: russ.treadon <[email protected]>
Date:   Tue Sep 15 10:25:37 2020 +0000

    Issue #1:  add fhrgrp and fhrlst back to gfsawips in setup_workflow.py (bugfix)

commit 67b33dd15633345e0fd59dd37728c26b36d4c0b3
Merge: c33869da 586fe6ce
Author: Kate Friedman <[email protected]>
Date:   Mon Sep 14 10:34:39 2020 -0400

    Merge pull request #130 from JessicaMeixner-NOAA/bugfix/rtofs

    Bugfix for rtofs

commit 586fe6ce19c5fc281dec16be3347d0311f3e99ce
Author: Jessica.Meixner <[email protected]>
Date:   Mon Sep 14 14:29:01 2020 +0000

    adding the line to go back a day for RTOFS for the if not NCO
    section because RTOFS will not be available until 06 cycle

commit 15fcb8a46e2cbc93282d1ad038e6decc5fcdacfb
Author: Lin.Gan <[email protected]>
Date:   Mon Sep 14 13:30:24 2020 +0000

    Restructured ecflow - up to post step

commit c33869dab2704396ea6e569dcd202a2b9866827a
Author: fanglin.yang <[email protected]>
Date:   Mon Sep 14 02:34:08 2020 +0000

    deleted  relocate_mv_nvortex.fd since storm relocation is no longer needed.
    modified build_tropcy_NEMS.sh to remove references to relocate_mv_nvortex

commit 4320bf9fd55757df79b63ed15c2041b1acd0e604
Author: russ.treadon <[email protected]>
Date:   Sat Sep 12 00:05:38 2020 +0000

    Issue #1:  correct DA typos in sorc/link_fv3gfs.sh

commit 674cd841a7be3a2a9c772cd455ab980195ea9fcc
Merge: 46c2404e ad1a9d90
Author: Kate Friedman <[email protected]>
Date:   Fri Sep 11 15:06:36 2020 -0400

    Merge pull request #124 from JessicaMeixner-NOAA/feature/gfsv16b-wave

    Splitting post jobs for waves

commit ad1a9d9044e89b75ec82bb201e35005552d3d177
Merge: 986f8f0b fd687727
Author: Jessica Meixner <[email protected]>
Date:   Fri Sep 11 14:01:35 2020 -0400

    Merge pull request #4 from KateFriedman-NOAA/feature/gfsv16b-splitwavepost

    Sync with feature/gfsv16b and small updates to split wave post changes

commit fd687727b2df80f81fabc41b94f808b74e68783c
Merge: 986f8f0b fc60e895
Author: kate.friedman <[email protected]>
Date:   Fri Sep 11 17:52:30 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-splitwavepost

commit fc60e895dea1c123a4b8e02b50df0d0cfa43f77f
Author: kate.friedman <[email protected]>
Date:   Fri Sep 11 17:45:03 2020 +0000

    Increase walltime for new wavepost jobs

commit e0dd1097de2c335400a546137569886a838c46ba
Merge: 0844b004 46c2404e
Author: kate.friedman <[email protected]>
Date:   Fri Sep 11 14:20:15 2020 +0000

    Merge branch 'feature/gfsv16b' into feature/gfsv16b-wave

commit 46c2404eba485d08e381ef81ebd5ac10c5ad605f
Merge: c5546570 9d9b79c9
Author: Kate Friedman <[email protected]>
Date:   Fri Sep 11 10:15:49 2020 -0400

    Merge pull request #128 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen

    Feature/gfsv16 wave prdgen

commit c554657023d82ac934b481593e55406c45157932
Author: russ.treadon <[email protected]>
Date:   Fri Sep 11 13:59:51 2020 +0000

    Issue #1:  update name of DA jobs and scripts in accordance with WCOSS Implementation Standards

commit 9d9b79c911add71065b0999821772d026609ad62
Merge: cb78f7b8 d3946f90
Author: wx21rph <[email protected]>
Date:   Fri Sep 11 13:48:19 2020 +0000

    Issue #94 solving a conflict

commit cb78f7b839a7b5fd5082f39592e3b450ce059e82
Author: wx21rph <[email protected]>
Date:   Fri Sep 11 13:21:41 2020 +0000

    Issue #94 add waves-prdgen, ICE->ICEC, Sleep in gempak script

commit b4a99e3d8b2f6a3837084ddfb08da6a667de81e0
Merge: edb91373 e6148566
Author: Lin.Gan <[email protected]>
Date:   Fri Sep 11 13:19:13 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/lgannoaa/global-workflow into feature/gfsv16b

commit e614856610da39345976823d29bdc32781f38c71
Author: lin.gan <[email protected]>
Date:   Thu Sep 10 16:26:11 2020 +0000

    add gfs gempak downstream jobs into def file

commit 907291d81c512968817241b883a0084b8506f2b2
Merge: 3f9695b4 d3946f90
Author: lin.gan <[email protected]>
Date:   Thu Sep 10 15:46:45 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b

commit ee4bc2b7268bf8f23ca7f7b3b631ddd6730c6a8c
Merge: 41d146fc d3946f90
Author: kate.friedman <[email protected]>
Date:   Wed Sep 9 08:54:17 2020 -0500

    Issue #5 - sync merge with feature/gfsv16b

commit 6b38e648f244afbba9590ea1a4de70d4ce2ed119
Author: jessica.meixner <[email protected]>
Date:   Tue Sep 8 22:14:13 2020 +0000

    worked on wcoss

commit edb913733023b1025786901aee895d2dbca5edc7
Author: Lin.Gan <[email protected]>
Date:   Tue Sep 8 16:09:07 2020 +0000

    ecflow script rename after redesign approved - not including all wave jobs

commit d3946f9006f433e0a6b2f459aeaa7fd8bf800aff
Author: russ.treadon <[email protected]>
Date:   Tue Sep 8 14:46:39 2020 +0000

    Issue #1:  clean up DA sections of link_fv3gfs.sh

commit 986f8f0b9858f61d32d337a67efa966a7948aa94
Author: jessica.meixner <[email protected]>
Date:   Fri Sep 4 15:42:25 2020 +0000

    fix from Bhavani for having first wave grib file be set
    as a forecast instead of analysis

commit 0844b0043c937925c5ad76b4fad03308483d49b3
Author: jessica.meixner <[email protected]>
Date:   Fri Sep 4 15:42:25 2020 +0000

    fix from Bhavani for having first wave grib file be set
    as a forecast instead of analysis

commit c1d5c45c13b46964d9d2479962b8c56307a6ad11
Author: jessica.meixner <[email protected]>
Date:   Fri Sep 4 15:42:25 2020 +0000

    fix from Bhavani for having first wave grib file be set
    as a forecast instead of analysis

commit 3f9695b44deef4790ae443f4d0c1844b1385374d
Author: Lin.Gan <[email protected]>
Date:   Thu Sep 3 19:07:35 2020 +0000

    ecflow gfs v16 nco review 3

commit 256885283bb42c2309e820ca53b44042b8223617
Author: jessica.meixner <[email protected]>
Date:   Thu Sep 3 17:44:47 2020 +0000

    updates to split boundary points plus saving config file updates

commit 8a203e5d5afa92a2b925f69efa5237a2c0d3dca6
Merge: 40c689b5 26c84b3c
Author: Lin.Gan <[email protected]>
Date:   Thu Sep 3 17:36:19 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b

commit 64409b1e9e976b75afd8a3548e7023dce534c4ae
Author: kate.friedman <[email protected]>
Date:   Thu Sep 3 15:42:23 2020 +0000

    Adding missing space to if-block in env files to resolve runtime failure

commit 0485442f5876b82de73c47429d3a70f58f0aa263
Merge: 26c84b3c 2006bbcb
Author: kate.friedman <[email protected]>
Date:   Thu Sep 3 15:37:50 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-wave

    * upstream/feature/gfsv16b-wave:
      adding pnt jobs as seperate jobs for env
      moving definitions of wavempexec and wave_mpmd from jobs to env
      lowering the resource requirement for wave prep job
      update module for cdo
      updates to resources for wave jobs
      Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py
      cleaning up wave point post scripts
      rename wave post script
      remove gridded so can rename
      updates to boundary point
      Remove extra space from line
      Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes
      fix typos
      updating WCOSS work around for CDO, CDO_ROOT is missing from module file
      adding module use for cdo module on wcoss dell
      updates for new weights file and adding cdo module for wave prep
      Adding new wavepostbndpnt and wavepostpnt jobs
      updating wave post scripts for restructured format
      updates to JJOBs for wave post point for new structure
      changing exit 0 to exit number for FATAL errors in ice prep for waves
      updating error message and exit if there is no current input file
      update WAVE_PREP so that currents do not check for previous 24 hour so that parallels will be reproducible also deleted unused variable
      renaming wave job and scripts
      update jobs for waves
      Issue #94 - pull in two fixes for wave job setup in free-forecast mode
      updates for wave scripts to split them, also added updates from GEFS branch to add extra error checking
      updates from gefs post workflow: updates for re-run case as well as extra error messages

commit 26c84b3ca81dec965ab31d00409b537f61174dc1
Author: russ.treadon <[email protected]>
Date:   Thu Sep 3 14:06:29 2020 +0000

    Issue #1:  remove pgrb2b.0p25 dependency from gfsawips in setup_workflow.py

commit 40c689b5d5886d9a4bed92e0c6262bfc5988836d
Author: Lin.Gan <[email protected]>
Date:   Thu Sep 3 02:00:09 2020 +0000

    ecflow gfsv16 redesign 2

commit 609e157c2477b662b55bbf3d53999cdd30856bc8
Author: kate.friedman <[email protected]>
Date:   Wed Sep 2 20:35:28 2020 +0000

    Issue #1 - update WAFS tag to gfs_wafs.v6.0.4 and remove HOURLY variable from WAFS configs

commit b0bebad6258bd81c0b0c89b559a04d9b059c838e
Author: kate.friedman <[email protected]>
Date:   Wed Sep 2 20:08:01 2020 +0000

    Issue #1 - change wavegempak and waveawipsgridded dependency to match waveawipsbulls and start when wavepostsbs is complete

commit 084c89e3d562f8c9977eaa17624646be388f7854
Author: russ.treadon <[email protected]>
Date:   Wed Sep 2 19:58:37 2020 +0000

    Issue #1:  set n_sponge=42 in gfs section of config.fcst

commit 2006bbcb1e54e3cd5ae0ff2826b6d0b211c1d013
Author: Jessica.Meixner <[email protected]>
Date:   Wed Sep 2 19:22:38 2020 +0000

    adding pnt jobs as seperate jobs for env

commit c61cd59488b64ead77e13b2eb5faeb383d052ea0
Author: Jessica.Meixner <[email protected]>
Date:   Wed Sep 2 19:02:21 2020 +0000

    moving definitions of wavempexec and wave_mpmd from jobs to env

commit 68ed2d670ebe25713554f2165a0bbc7c35fb5030
Merge: 4e7975d2 70abda26
Author: jessica.meixner <[email protected]>
Date:   Wed Sep 2 17:45:26 2020 +0000

    Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave

    Conflicts:
    	parm/config/config.resources
    	ush/rocoto/setup_workflow.py
    	ush/rocoto/setup_workflow_fcstonly.py

commit 70abda260dc9ab47533d25cd570dd055c4644123
Merge: 0a31d568 52e987ac
Author: Kate Friedman <[email protected]>
Date:   Wed Sep 2 10:28:22 2020 -0400

    Merge pull request #122 from KateFriedman-NOAA/feature/gfsv16b_wavedown

    Add downstream wave jobs to GFSv16

commit 0a31d568bdacd0fb2d8bc6e1fddb09d2c72d014c
Author: kate.friedman <[email protected]>
Date:   Wed Sep 2 14:09:57 2020 +0000

    Remove unneeded settings from config.post

commit 52e987ac67477932e5b034321cf52f1cc756081c
Author: kate.friedman <[email protected]>
Date:   Wed Sep 2 13:05:42 2020 +0000

    Added null DBNROOT to wave awips configs

commit b3c7b7379a6ebb53b4d4533b894b1bf36df3c2fd
Merge: 074f2782 add6ea0b
Author: kate.friedman <[email protected]>
Date:   Wed Sep 2 13:02:41 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b_wavedown

commit 806a57838b2a6fd8a9df993fd6cd8debf9fb659a
Author: Jessica.Meixner <[email protected]>
Date:   Wed Sep 2 12:28:43 2020 +0000

    add extra script for by hour points for waves

commit ab3e0b196bbb147da99da4ef34710e8d5fbb68ea
Merge: 054f8c53 4e7975d2
Author: Jessica.Meixner <[email protected]>
Date:   Wed Sep 2 11:40:04 2020 +0000

    Merge branch 'feature/gfsv16b-wave' of github.com:JessicaMeixner-NOAA/global-workflow into feature/gfsv16b-wave

commit 054f8c53608689b00b32d035ce728ed3d8cb3ad9
Author: Jessica.Meixner <[email protected]>
Date:   Wed Sep 2 11:39:28 2020 +0000

    updates for boundary points by hour parallelization

commit 4e7975d265857e4e634e0c7352f6ed2de1a99336
Author: jessica.meixner <[email protected]>
Date:   Tue Sep 1 22:45:05 2020 +0000

    lowering the resource requirement for wave prep job

commit add6ea0bae2c56bba2e3d76460771095b98786b1
Author: russ.treadon <[email protected]>
Date:   Tue Sep 1 19:40:10 2020 +0000

    Issue #1:  rename enkf_chgres_recenter executables in accordance with WCOSS Implementation Standards

commit 8a7e8d9944b8727da91bfb28bbfe44958f0aeb65
Merge: 4c9978a8 595edcfa
Author: Kate Friedman <[email protected]>
Date:   Tue Sep 1 15:00:08 2020 -0400

    Merge pull request #121 from KateFriedman-NOAA/feature/gfsv16b-wafs

    Adding WAFS jobs to GFSv16

commit 4c9978a8b0a98527d7c78a3da0a0a55e39cefed0
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 1 18:48:44 2020 +0000

    modified:   checkout.sh to use gldas_gfsv16_release.v1.6.0

commit 595edcfaaf1372889c8d569e01ec4dfefb51c469
Merge: 8a593c8d 06bda7de
Author: kate.friedman <[email protected]>
Date:   Tue Sep 1 17:30:08 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs

commit ada0fb3155a57bdba074c84e1ab3d73eabb0e2f4
Author: jessica.meixner <[email protected]>
Date:   Tue Sep 1 17:18:27 2020 +0000

    update module for cdo

commit 074f2782438471740453e356b856a4756e59c858
Merge: a1a3d69b 8a593c8d
Author: kate.friedman <[email protected]>
Date:   Tue Sep 1 14:30:56 2020 +0000

    Sync with WAFS branch

commit a1a3d69ba40564f550053b99b4328ba41c7cc45d
Merge: 249b6ef7 06bda7de
Author: kate.friedman <[email protected]>
Date:   Tue Sep 1 14:22:20 2020 +0000

    Sync merge with feature/gfsv16b

commit 8a593c8df03d8a879c5488fbd671fef94f5d867d
Author: kate.friedman <[email protected]>
Date:   Tue Sep 1 14:09:49 2020 +0000

    Update to WAFS tag and added SENDDBN_NTC to both base configs

commit 5270ed831c0b3c428736cbd8a789a4d3cfdcc0fe
Merge: 95ec3329 eabda84f
Author: kate.friedman <[email protected]>
Date:   Tue Sep 1 14:03:53 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs

commit 06bda7dec74831951034b72c83abbb2d994ee539
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 1 14:02:44 2020 +0000

    modified:   link_fv3gfs.sh to not link or copy
    0readme fix_chem fix_fv3  fix_sfc_climo
    which are not used by GFS.v16 and are of large size

commit eabda84f97c11251f672d95bb604ad0c50e8da18
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 1 13:48:11 2020 +0000

    modified:   link_fv3gfs.sh  to remove chgres_cube.fd and chgres_cube.fd in sorc/link_fv3gfs.sh

commit 223492bf6c56c0491c0034dc1d4a0a3e6e97a607
Author: fanglin.yang <[email protected]>
Date:   Tue Sep 1 03:59:53 2020 +0000

    modified:   link_fv3gfs.sh to allow "fix" directories to be removed before rerunning
                link_fv3gfs.sh for RUN_ENVIR=nco case

commit 95ec3329e72a54b0dabdccdecd467972c4914dcd
Author: kate.friedman <[email protected]>
Date:   Mon Aug 31 18:57:32 2020 +0000

    Added WAFS jobs to free-forecast mode, updates for extending WAFS to fh120, and two bug fixes in link_fv3gfs.sh and hpssarch_gen.sh

commit 6f660d9a9a5758f3d74f87f170a95a26ca0c0e6a
Merge: 8da41916 3282a899
Author: kate.friedman <[email protected]>
Date:   Mon Aug 31 17:58:55 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs

commit 3282a8996ab0510699932a53897b87730b2cc492
Author: kate.friedman <[email protected]>
Date:   Mon Aug 31 17:47:37 2020 +0000

    Renamed global-workflow-owned ex-scripts to remove ecf extension and updated other scripts which call those ex-scripts

commit 9cde3a41f34d0c2618e8fb06ff1276cec5378ef5
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 18:46:57 2020 +0000

    Remove UFS_UTILS ecf extensions

commit f7a92dbc1c3ad822d3b8e567967e91384631288d
Author: russ.treadon <[email protected]>
Date:   Fri Aug 28 18:09:26 2020 +0000

    Issue #1:  (1) update earc.sh directory removal to be consistent with arch.sh, (2) update config files to be consistent with EMC real-time GFS v16 parallel

commit 249b6ef761fb41b5d102b282fccedeb827192dff
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 16:52:54 2020 +0000

    Remove ecf script name extensions from downstream wave scripts

commit 004a29f39204314159d2cbd028950cfaba07cf33
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 16:50:03 2020 +0000

    Add new downstream wave jobs to workflow

commit 8da4191644ff55f46e8f394e4e1d29641d3c117c
Merge: 8f97726a 6319bda4
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 16:42:11 2020 +0000

    Sync merge with feature/gfsv16b

commit 8f97726a4170d56dcaf6732ae141fae9aaebfd8d
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 16:39:50 2020 +0000

    Add new downstream WAFS jobs

commit 6319bda47548873acb8859d9a47d2ac6a6ef4c67
Author: kate.friedman <[email protected]>
Date:   Fri Aug 28 15:41:55 2020 +0000

    Issue #1 - update GLDAS and UPP workflow files for removal of ecf script extension

commit 8f7615c76f76611d748246a80d9286de7c4d3295
Author: russ.treadon <[email protected]>
Date:   Thu Aug 27 20:53:25 2020 +0000

    Issue #1:  remove ".ecf" suffix from DA scripts referenced in sorc/link_fv3gfs.sh

commit af754d1fa0aa4a521fcd5b4fc04eaa88d475dbff
Author: russ.treadon <[email protected]>
Date:   Thu Aug 27 20:47:14 2020 +0000

    Issue #1: remove ".ecf" extension from DA exscripts (as per WCOSS Implementation Standards) referenced from parm/config files

commit a6e91b48b7024c83491fd1f93c6d7df8e3301af5
Author: jessica.meixner <[email protected]>
Date:   Thu Aug 27 20:25:45 2020 +0000

    updates to resources for wave jobs

commit f0b9a98973b7983eadab51c7009723b5d0b4a564
Author: russ.treadon <[email protected]>
Date:   Wed Aug 26 23:04:02 2020 +0000

    Issue #1:  update name of DA enkf chgres script in config.echgres

commit 01f33c498bf0b5c0d48486cd04dab9c93c721906
Author: russ.treadon <[email protected]>
Date:   Wed Aug 26 20:58:29 2020 +0000

    Issue #1:  Rename DA enkf chgres job and script as per EE2 guidance

commit 7d3f37819aba17dc794d10f7453061802779b435
Author: kate.friedman <[email protected]>
Date:   Wed Aug 26 18:35:59 2020 +0000

    Workflow changes for wave gempak and awips downstream jobs

commit 485632eafe37c1866011af1bd0a601fb1c7adc4c
Merge: 2946baad e191fd4b
Author: Jessica Meixner <[email protected]>
Date:   Wed Aug 26 11:49:40 2020 -0400

    Merge pull request #3 from KateFriedman-NOAA/feature/gfsv16b-wave

    Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py

commit e191fd4bb87af787feab486bf072fe4dce7f12f4
Author: kate.friedman <[email protected]>
Date:   Wed Aug 26 15:47:49 2020 +0000

    Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py

commit 4641a72e1ced493c7ec5d837a3093908e388b5df
Merge: a1b08c92 25ae4899
Author: Kate Friedman <[email protected]>
Date:   Wed Aug 26 11:33:23 2020 -0400

    Merge pull request #119 from GeorgeGayno-NOAA/feature/gfsv16b

    enkf_chgres_recenter_nc.fd - Remove hard-coded vertical levels.

commit 25ae4899cee3dc3aeff1e36f0ac1d0b0773ca2f9
Author: George Gayno <[email protected]>
Date:   Wed Aug 26 14:25:36 2020 +0000

    feature/gfsv16b:  Add Cory's updates to build 'enkf_chgres_recenter_nc'
    on Cray.

    Issue #102.

commit 2946baad88d908b32793f542cab42f0c89adf009
Author: jessica.meixner <[email protected]>
Date:   Wed Aug 26 13:44:06 2020 +0000

    cleaning up wave point post scripts

commit 3590e9a45e2b13b22ff3c3d4827907ddcf55eebf
Merge: 727c3ffd a1b08c92
Author: George Gayno <[email protected]>
Date:   Tue Aug 25 20:20:17 2020 +0000

    feature/gfsv16b:  Merge updates from authoratative feature/gfsv16b
    branch.

    Issue #112.

commit a1b08c92892278453f25c2530f8b8fb968af9a34
Merge: 45ad029b ce3816d3
Author: Kate Friedman <[email protected]>
Date:   Tue Aug 25 16:01:57 2020 -0400

    Merge pull request #116 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen

    Feature/gfsv16 wave prdgen

commit ce3816d3e88b8d2de7472a214e66cb54aceca9a6
Merge: b0c91610 45ad029b
Author: wx21rph <[email protected]>
Date:   Tue Aug 25 19:55:53 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16_wave_prdgen

    Issue #94 Adding prdgen for waves

commit 90181842fbb7a22479f12d3a67bcdc8fa4b8f669
Author: jessica.meixner <[email protected]>
Date:   Tue Aug 25 19:02:22 2020 +0000

    rename wave post script

commit 1f15be0a8207d3117200bcc145a5ae66b7445ec3
Author: jessica.meixner <[email protected]>
Date:   Tue Aug 25 19:01:41 2020 +0000

    remove gridded so can rename

commit 1fc5b368fe0cd438e2202b62de7753b7efed7af6
Author: Jessica.Meixner <[email protected]>
Date:   Tue Aug 25 19:00:20 2020 +0000

    updates to boundary point

commit f0e3ae5c2cd441673a4a670618e87f050a12c9e9
Merge: 98d6c163 b74b21e7
Author: Jessica Meixner <[email protected]>
Date:   Tue Aug 25 14:15:57 2020 -0400

    Merge pull request #2 from KateFriedman-NOAA/feature/gfsv16b-wave

    Feature/gfsv16b wave

commit b74b21e71edbb62207ccfcafe4c6ed5b6d301cfe
Author: kate.friedman <[email protected]>
Date:   Tue Aug 25 18:14:15 2020 +0000

    Remove extra space from line

commit 25e2cc4596213b39d2a3dc3ee8afda4a86e10d38
Author: kate.friedman <[email protected]>
Date:   Tue Aug 25 18:12:04 2020 +0000

    Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes

commit 45ad029bad4367961e5eff987f27226b0ac78d5a
Author: russ.treadon <[email protected]>
Date:   Tue Aug 25 13:40:45 2020 +0000

    Issue #1:  several minor changes

    * Externals.cfg and sorc/checkout.sh:  update to tag verif_global_v1.10.1

    * jobs/rocoto/arch.sh:  update ARCDIR cp to use new path to tracker output

    * scripts/run_gfsmos_master.sh.dell:  remove module purge from mos driver script

commit 0a85a36ef0784bebf96d2f97c24dd4c642ac23f1
Merge: d5861551 5190efb1
Author: Kate Friedman <[email protected]>
Date:   Tue Aug 25 09:20:42 2020 -0400

    Merge pull request #118 from GuangPingLou-NOAA/feature/gfsv16b

    Issue #117 Modufy Bufr station Hilo's grid point representation

commit 5190efb119c6eec6a7c67d90327dee4666307541
Author: Guang.Ping.Lou <[email protected]>
Date:   Tue Aug 25 12:30:45 2020 +0000

    Issue #117 Modufy Bufr station Hilo's grid point representation

commit 98d6c16336e5b0a3241174c54b7631667a4f919d
Merge: 0eacf5e2 32bd57ef
Author: Jessica.Meixner <[email protected]>
Date:   Mon Aug 24 22:27:39 2020 +0000

    Merge branch 'feature/gfsv16b-wave' of github.com:JessicaMeixner-NOAA/global-workflow into feature/gfsv16b-wave

commit 0eacf5e21c3149d2d922b4c2495e48fb2355e639
Author: Jessica.Meixner <[email protected]>
Date:   Mon Aug 24 22:27:28 2020 +0000

    fix typos

commit b0c9161061302ccf4b890cceabe5b4eaecb67e61
Author: wx21rph <[email protected]>
Date:   Mon Aug 24 22:25:05 2020 +0000

    Issue #94 changing native by interpolated grids for gempak

commit 8a68d3c6d6996f389609d5961f32f0db116797d1
Author: wx21rph <[email protected]>
Date:   Mon Aug 24 21:47:44 2020 +0000

    Issue #94 removing the load of modulefiles and sending set.pdy to j-jobs

commit 32bd57ef2b390dbe73a744188a40ca4c42c306fe
Author: jessica.meixner <[email protected]>
Date:   Mon Aug 24 20:35:39 2020 +0000

    updating WCOSS work around for CDO, CDO_ROOT is missing from module file

commit a2d06bb0bf82ee48899cb26ea9abf2331b543107
Author: jessica.meixner <[email protected]>
Date:   Mon Aug 24 18:55:02 2020 +0000

    adding module use for cdo module on wcoss dell

commit e5c9f037bd82ed4bc72cf11241d7c053160ff5b9
Author: jessica.meixner <[email protected]>
Date:   Mon Aug 24 18:29:36 2020 +0000

    updates for new weights file and adding cdo module for wave prep

commit 96655fbe5b5daf130d4a9a458ce47059c047376a
Author: wx21rph <[email protected]>
Date:   Mon Aug 24 16:56:37 2020 +0000

    Issue #94 removing modulefiles load from j-jobs

commit 7f9344f777075ce3220d9a9fccba74c07e4f40e2
Author: wx21rph <[email protected]>
Date:   Mon Aug 24 14:32:26 2020 +0000

    Issue #94 Solving reviewers comments

commit c9598a3207bb06cbd7d2619d97f723f6511da9a4
Merge: bf97710b 92a2a43d
Author: Jessica Meixner <[email protected]>
Date:   Mon Aug 24 10:12:43 2020 -0400

    Merge pull request #1 from KateFriedman-NOAA/feature/gfsv16b-wave

    Adding new wavepostbndpnt and wavepostpnt jobs

commit 92a2a43db190982944b4166b929a791a1b0b0750
Author: kate.friedman <[email protected]>
Date:   Mon Aug 24 14:06:23 2020 +0000

    Adding new wavepostbndpnt and wavepostpnt jobs

commit bf97710bece30195679740b0de2b32e0adc6c3c6
Author: Jessica.Meixner <[email protected]>
Date:   Fri Aug 21 00:20:56 2020 +0000

    updating wave post scripts for restructured format

commit a914521cec478667191b365e2a2a62e3553e0ff7
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 23:52:47 2020 +0000

    updates to JJOBs for wave post point for new structure

commit 1f195f8d432072f4e4f66406ea6b09256a185d2b
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 15:20:28 2020 +0000

    changing exit 0 to exit number for FATAL errors in ice prep for waves

commit f836a7869dbb88badd93fcd9d08314284eee4f96
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 15:17:28 2020 +0000

    updating error message and exit if there is no current
    input file

commit 529cc3692f4fc003295584e761279be3c9405b68
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 14:50:50 2020 +0000

    update WAVE_PREP so that currents do not check for previous 24 hour
    so that parallels will be reproducible
    also deleted unused variable

commit 57c4258ba73778fe95118ebfae98c4bbf012ae37
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 14:09:22 2020 +0000

    renaming wave job and scripts

commit 1626cb2f90bfea5663f198cfc2ac2916a9200e1a
Merge: da292216 d5861551
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 14:02:54 2020 +0000

    Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-splitwavepost

commit da2922163922f4b4b14dba78dba36e9eced3a2c5
Author: Jessica.Meixner <[email protected]>
Date:   Thu Aug 20 13:50:15 2020 +0000

    update jobs for waves

commit a1c456f267ddf701aa47ad33fd231a2f1ae0bf99
Author: wx21rph <[email protected]>
Date:   Wed Aug 19 20:09:47 2020 +0000

    Issue #94  renaming the J-jobs

commit 41d146fc0fda97a41ef829ecff41b005bbf21740
Merge: c2a4f04e d5861551
Author: kate.friedman <[email protected]>
Date:   Wed Aug 19 13:54:13 2020 -0500

    Issue #5 - sync merge with feature/gfsv16b after COMPONENT update

commit 036617c8a9b5da765b82c276f7b087aa4e16d679
Author: wx21rph <[email protected]>
Date:   Wed Aug 19 14:24:01 2020 +0000

    Issue #94  Updating the modulefiles for waves-prdgen

commit d5861551ae5b1fe2c2b00802159a42f7fde06357
Merge: 9b923ac3 0e0699aa
Author: Kate Friedman <[email protected]>
Date:   Wed Aug 19 09:49:08 2020 -0400

    Merge pull request #109 from NOAA-EMC/feature/gfsv16b-restructure

    GFSv16 restructure for new $COMPONENT subfolder

commit 1e76093c8554c3ccb87a7ed243f738f5763ca5da
Author: wx21rph <[email protected]>
Date:   Wed Aug 19 13:47:44 2020 +0000

    Issue #94  adding waves-prdgen to gfsv16

commit 0e0699aac7cb00988c999546dcdf3a52b11706e3
Author: kate.friedman <[email protected]>
Date:   Wed Aug 19 13:47:29 2020 +0000

    Issue #94 - fix to messed up shebang in setup_expt_fcstonly.py

commit c7a708fd54ffe60c6259f35c4230e6e73ecd6f77
Author: wx21rph <[email protected]>
Date:   Tue Aug 18 21:16:19 2020 +0000

    Issue #94 adding waves-prdgen for gfsv16

commit 0b2744e53a35c570178b7e6cd7ede72b6255c579
Author: Kate.Friedman <[email protected]>
Date:   Fri Aug 14 17:36:31 2020 +0000

    Issue #94 - pull in two fixes for wave job setup in free-forecast mode

commit 4888001e76d24277b3a75d1d520945383f49d456
Author: Jessica.Meixner <[email protected]>
Date:   Fri Aug 14 18:55:40 2020 +0000

    updates for wave scripts to split them, also added updates from
    GEFS branch to add extra error checking

commit 00dc1973010b68e65e176c90a1eeaef359b7beae
Author: Kate.Friedman <[email protected]>
Date:   Fri Aug 14 17:36:31 2020 +0000

    Issue #94 - pull in two fixes for wave job setup in free-forecast mode

commit c2a4f04e50ccb45febf55f7985c64a287973dee0
Author: kate.friedman <[email protected]>
Date:   Fri Aug 14 08:21:01 2020 -0500

    Issue #5 - update for COMINsyn on Orion

commit fe849e918b30e6a9ca22ebe1a81e350afc4ed6cf
Merge: 0c06cda7 9b923ac3
Author: kate.friedman <[email protected]>
Date:   Thu Aug 13 18:49:52 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit 9b923ac308841d7accfc6ed2a4ef9733dce2305e
Author: kate.friedman <[email protected]>
Date:   Thu Aug 13 18:37:51 2020 +0000

    Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal

commit bf0bff444bdd8a02e1c875eadbdc6b60628cff76
Author: kate.friedman <[email protected]>
Date:   Wed Aug 12 10:00:51 2020 -0500

    Issue #5 - update to JGFS_CYCLONE_TRACKER for machine=ORION

commit 0c06cda7dd667e936e8aa71fc1c584a4839094ba
Author: kate.friedman <[email protected]>
Date:   Mon Aug 10 18:50:44 2020 +0000

    Issue #94 - update CFP module version on WCOSS-Dell

commit b73d25224d8208291048b774a91497928b051713
Author: kate.friedman <[email protected]>
Date:   Mon Aug 10 17:58:55 2020 +0000

    Issue #94 - update WCOSS-Dell module versions to prod_util and EnvVars

commit 485ee56c1e772e8efa944ee9a3f350130d49a718
Author: kate.friedman <[email protected]>
Date:   Mon Aug 10 13:00:42 2020 +0000

    Issue #94 - fix AWIPS file dependency

commit 5a7e45e398efafb4b5b6cde0a69f799a99406d34
Author: kate.friedman <[email protected]>
Date:   Fri Aug 7 09:48:45 2020 -0500

    Issue #5 - add missing AND condition for wavepostsbs

commit bdaa28fbdc2372ed85320a4b044a33d350e2e7be
Author: kate.friedman <[email protected]>
Date:   Fri Aug 7 13:34:22 2020 +0000

    Issue #94 - updates for FSU tracker

commit e8800078f8d00e9447ed81b83eb49135110deb8f
Author: kate.friedman <[email protected]>
Date:   Thu Aug 6 14:31:05 2020 -0500

    Issue #5 - change UFS_UTILS checkout back to auth repo release/ops-gfsv16 branch after commit to it

commit df20d848de2420eacba296ebdf9c9fe68d697351
Author: kate.friedman <[email protected]>
Date:   Wed Aug 5 15:46:27 2020 -0500

    Issue #5 - fix for errant text in setup_workflow_fcstonly.py for waveinit job settings

commit 4cee6f65467c34e171ed3e0bdc72458a875e5e21
Author: kate.friedman <[email protected]>
Date:   Wed Aug 5 17:14:04 2020 +0000

    Issue #94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post

commit 563d2931378c3d6276212cc9c4e2a4e9a286589c
Author: kate.friedman <[email protected]>
Date:   Tue Aug 4 18:19:47 2020 +0000

    Issue #94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh

commit 7c4f8eab074115323a7812dc498e8ea043916718
Author: kate.friedman <[email protected]>
Date:   Tue Aug 4 08:53:39 2020 -0500

    Issue #5 - add new APRUNCFP setting to ORION.env

commit 5652485ef0cc42f8814df9d08e8b953b025d08b4
Merge: 5cf8a458 d1751309
Author: kate.friedman <[email protected]>
Date:   Mon Aug 3 13:10:27 2020 -0500

    Issue #5 - Sync merge branch '…
@KateFriedman-NOAA KateFriedman-NOAA added the wontfix This will not be worked on label Feb 23, 2021
@KateFriedman-NOAA
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global-workflow CMs have decided not go use manage_externals and will wait to see the solution developed for the unified system. Keeping open until removed.

@WalterKolczynski-NOAA
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As soon as we remove the manage externals stuff, we can close this issue.

lgannoaa pushed a commit to lgannoaa/global-workflow that referenced this issue Feb 9, 2022
@JiliDong-NOAA @WenMeng-NOAA
update modules for jet (NOAA-EMC#3)
b2c1050
lgannoaa pushed a commit to lgannoaa/global-workflow that referenced this issue Feb 9, 2022
@fossell @WenMeng-NOAA
@kayeekayee @mkavulich @hertneky @DusanJovic-NOAA
Merge DTC_post into develop branch (NOAA-EMC#131)
34c7a61 
* Initialize 'recname' array to blank-fill array and avoid GNU compiling errors

* DTC Sync: Add gtg stub routines to community makefile

* DTC Sync: Use 'INCLUDE mpif.h' instead of 'use mpi' for community portability

* DTC Sync: Declare 'recname' array with blanks to avoid compiling errors with GNU for community

* Temporary hack for community testing until EMC provides fix

* DTC Sync: Add and update initialization routines for NMM binary read. These have not been used operationally for a while. This commit is merely to sync the community and emc code bases

* Link data files in run_unipost scripts for updated CRTM

* First stage in removing WRF dependency: if you copy in the frame/, main/, and external/ directories from a successful WRF build, this version compiles and runs successfully

* Second stage in removing WRF dependency:

Now contains a new directory "wrf_io/" with its own makefile for building the
relevant WRF code. Now you no longer have to pre-build WRF, only run the
configure script to create a configure.wrf file.

To build this version:

 - Copy in the external/, frame/, inc/, main/, Registry/, and tools/ directories from the RAW UNBUILT WRF source code into the new wrf_io/ directory
 - Copy in a configure.wrf file created with that same WRF source code

Should be able to pare down the above list soon, many of them are only
needed for one or two files (or perhaps ultimately none)

This version was tested with the WRF V4.0 Friendly Release NOAA-EMC#3 (git hash e96ef955), but it should work for a wide range of WRF code

* Adding a basic .gitignore file

* AR should not be defined with flags, this can be different for some platforms

* Third stage in removing WRF dependency: configure.wrf file no longer
included in wrf_io makefile

* Adding some makefiles to track their changes

* Updating clean rules to fully clean wrf_io stuff

* Fourth stage in removing WRF dependency: configure.wrf no longer required!

 - Added "wrf_makerules" file to be included in a couple makefiles
   - Contains configure.wrf preamble and postamble, but no
     platform-specific stuff!
 - Still need to copy over WRF directories, *and* properly check out the
   versioned files
 - Modified frame Makefile to remove an unnecessary compilation
   - Hopefully a lot more of this in the future!

* Versioning WRF files in frame/ directory. No longer need to copy this directory in from WRF.

* Fifth stage in removing WRF dependency: frame/ and main/ no longer need
to be copied in to wrf_io/ directory

 - Versioned the necessary files in frame/ from the WRF build.
 - Moved depend.common from main/ to frame/, and versioned it
 - Build libwrflib.a in the wrf_io/ directory instead of wrf_io/main/

* Fix hard-coding of netCDF path. Don't think it was causing problems but hard-coding is bad, mmkay

* Finally started testing other platforms/options. This commit fixes serial compile. Tests now work for options 7 and 8 (gfortran serial and parallel)

 - Link in already existing UPP stub mpi library files for WRF serial build
 - Use already existing "sw_dmparallelflag" switch from configure to
   pass -DSTUBMPI flag for serial builds
 - Remove clog.o file which is only needed for log file buffering, which
   is rarely used in WRF and certainly not supported for UPP.
 - While removing log file buffering, also remove a lot of other
   unsupported CPP ifdefs

* Properly add serial flags. Not sure why the previous version was working...

* Clean out the remnants of the platform-specific wrf_makerules.

* More wrf_makerules cleanup

* Even more wrf_makerules cleanup

* Continuing wrf_makerules cleanup, adding to-do list under version control

* Removing a lot more unnecessary make rules.;

* Remove registry requirement, and version necessary tools/ files

* Adding a bunch of external io source code

* Remove inc/ dependency...very close to removing all WRF dependency!

Move inc files to frame

* Added rest of external libraries, now just testing to go!

* Delete todo

* Get rid of diffwrf, stub-ify wrf_debug

* Remove wrf_debug completely. There, one WRF routine down, seventeen thousand to go...

* Remove ESMF dependence. Lots of line savings here!

* Remove WRF grib1 stuff, really making progress now!

* Remove rest of WRF grib stuff, references to UPP libs from WRF

* Removing fftpack

* Get rid of some "undefined reference" warnings

* Move module_internal_header_util and intio_tags to io_int directory

* Remove module_wrf_error, add some stub routines to compensate

* Remove module_machine

* Remove module_driver_constants and wrf_shutdown

* Tools directory removed!

* Removing ioapi_share directory, redistributing necessary include files

* libwrf no longer necessary

* Remove a whole bunch more residual WRF crap. Mostly unnecessary
and/or unused variables and CPP flags.

* Remove module_wrfsi_static

* Remove WRF links from unipost run script; include necessary lookup
tables in parm/ directory

* Remove unnecessary subroutines from pack_utils

* Delete a whole bunch more unneeded flags and variables

* Remove unnecessary netCDF code

* Remove frame directory, final step before consolidating everything in
its final location

 - Remove some old WRF mpi stub stuff
 - Move pack_utils to io_int directory and build it there
 - Remove a couple more unnecessary makefile items
 - Remove now-defunct frame directory and associated make/clean rules

* Remove a test routine and an unnecessary variable

* A bunch more stuff stripped out.

 - Remove unused variable from io_int.F90
 - Remove unused module module_io_int_read
 - Remove old logic involving 4DVAR
 - Remove a bunch more unneeded/unused makefile variables

* Start moving code to final location: move io_int code to wrf_io top directory

* Continue moving WRF code to its final location: move io_netcdf code to wrf_io top directory

* Move WRF remnants to their final location: src/lib/wrf_io

* Deprecate capability to read WRF binary I/O files

* Remove rest of WRF binary I/O code

 - Remove binary I/O code and makefiles
 - Add a stub "wrf_message" routine to wrf_io.F90 (the netCDF I/O routine)

* Some final touch-ups to this code before rigorous testing.

 - Condense wrf_makerules and roll it into the main wrf_io makefile
 - Remove some unipost source files which are unnecessary without wrf
   binary IO
 - Remove old "Makefile_nowrf" which was from an old partial attempt to
   remove WRF depepndency

* Remove old changes inadvertantly included in removal of WRF dependency

* Update ip libraries to v3.0.0

* Update g2 libraries to v3.1.0

* Update sigio libraries to v2.1.0

* Update g2tmpl libraries to v1.5.0

* update version info/log

* Updating UPP run scripts and Adding V4 Users Guide

* Add GFS config files and update run scripts

* Update V4 UG

* Adding "-w" flag to wrf_io makefile to suppress "Unrecognized directive" warnings

* Update V4.0 UG required libraries section

* Bug fix for nemsiompiio format for FV3GFS processing

* Edit version info for updated nemsio library to v2.2.2 and bug fix uppv4.0.1

* Nemosio fix for serial built from Laurie.

* modifying scripts to use binarynemsiompiio format for FV3

* Modify error message to reflect binarynemsiompiio

* Jira NOAA-EMC#121 Fix typo in Wind Energy Calculation (UPP ID 411) in MDL2AGL.f

* Jira NOAA-EMC#122 Fix error that grabs incorrect EL level for TAUX/TAUY calculation in CALTAU.f

* Jira NOAA-EMC#131 Fix error in pname for updraft helicity in post_avblflds.xml

* Jira NOAA-EMC#132 Fix incorrect grib codes in RQSTFLD.f for wind shear variables

* Jira NOAA-EMC#135 Fix allocation issue for PSFC in Block 2 of SURFCE.f

* Jira NOAA-EMC#136 Fix typo in CALRAD_WCLOUD_newcrtm.f of incorrect iget ID for INSAT 3D select_channels_L call

* Jira NOAA-EMC#139 Remove 10 m POT/SPFH from wrf params - not available for wrf output

* Fix mods for selecting satellite channels in CALRAD_WCLOUD_newcrtm.f and SELECT_CHANNELS.f

* modify makefile to conditionally add mpi stubs for serial builds, instead of always including by default

* Modified GRIB1 Table lyx doc for available satellite channels/levels

* Fix allocation issue for PSFC in Block 2

* Fix mods for selecting satellite channels in CALRAD_WCLOUD_newcrtm

* Fix grib codes in RQSTFLD.f for wind shear variables

* Fix incorrect EL level for TAUX/TAUY calculation

* Fix typo in Wind Energy Calculation (UPP ID 411)

* Fix index for SEVIRI

* Fix index for SEVIRI

* Manual sync of EMC mods to comupp

* Add new routines to makefile

* Update crtm submodule to v2.2.3.1_subset tag to include GOES-R/abi* fix files

* Add abi* coefficient files to run scripts for GOES16 products

* Remove extraneous great than sign

* Comment out #if for testing. PGI and GNU fail with this syntax

* Remove extraneous greater than sign

* Revert MXLVL back to 70. Comment out #if 0 lines.

* Remove nmm-binary read file. No longer supported

* Add community contorl filse and update others

* Chain make commands with "&&" instead of ";", this prevents infinite loop when you call clean script under certain circumstances (like when you forget to check out the crtm submodule)

* Initial progress in new build system:
 - add NCEPLIBS_DIR environment variable into configure.upp
 - use NCEPLIBS_DIR to point to external build of wrfio libraries
 - Remove our build of wrf_io in favor of external build

Compile tested only on Cheyenne, gnu compilers for now

* Missed one change to properly build with external WRF libs

* Removing netCDF discovery dialogue. We should not try to be cute or clever. If the user wants NETCDF they should be able to set a variable or make some links.

* Revamping how we check for JASPER libraries/include files.

Old code incorrectly and unexpectedly defaulted to a (typically) non-existant location for JASPERLIB and JASPERINC.

In keeping with the 'Let the configure script fail'(TM) philosophy I'm trying to instill here,
if the user does not set JASPER or JASPERLIB and JASPERINC variables, unless one of the old default locations exists,
the configure script will fail with an error message. Users can overwrite this message by setting NOGRIB2 environment
variable, but support for GRIB1 will be going away in the not-so-distant future!

* Deleting old deprecated makefiles clogging up src/unipost

* Use consistent JASPER variables between UPP and NCEPlibs. Allow old JASPER variables for back-compatibility

* Use external GRIB2 (g2 and g2tmpl) library builds. Tested on Cheyenne for gnu compilers so far.

* Got unipost to build with all (possible) external libraries

* ndate and copygb also build with external libraries (cheyenne, gnu)

* Since we no longer have a native copy of "params_grib2_tbl_new" file from g2tmpl libraries, we need to link it in from NCEPlibs in the run scripts

* The big merge is here! Moved all the comupp framework to the top level.
This includes the following moves/renames:

comupp/c*                   --> configure|compile|clean
comupp/makefile             --> makefile
comupp/arch/                --> sorc/arch
comupp/src/lib              --> sorc/comlibs (this includes crtm submodule!)
comupp/src/unipost/makefile --> sorc/ncep_post.fd/makefile_dtc

Modifications had to be made to clean/configure/compile scripts, as well
as the community makefiles and Config.pl, to accomodate the new directory structure
and naming schemes. Additionally, there was one divergence point between
the community source code and the ncep source code: GFSPOST was split
into GFSPOST and GFSPOSTSIG.

This version compiles successfully, but the merge is not really finished.
Lots more work before this is considered a complete merge.

* Remove top-level makefile to simplify things

* Removing the last of the external libraries

* Under comupp, moving contents of docs/ parm/ and scripts/ to corresponding top-level directories. A few files in comupp/parm/ remain since they have files in the top-level parm/ that have differences; Tracy is sorting those out.

* Modify clean and compile scripts for proper directory navigation; this was causing the clean script to fail to remove the old configure.upp file

* In clean script, only try to find custom make command if configure.upp exists and is not empty

* Overhaul ncep_post build script: use bash instead of sh, machine name is now a command-line argument

* Using feedback from Tracy, removing or renaming the rest of the files in comupp/parm. Now everything should be in the top-level parm/ directory

* Add top-level .gitignore file so git will not track compilation files such as configuration files, .exe, .o, and .mod

* Updating community runscripts

 - Copy compiled executable to exec/ directory instead of bin/, mirroring
ncep build
 - Update runscripts
   - Replacing references to ndate with `date` utility (thanks to Ka Yee Wong)
   - Removing references to copygb
   - Reference new location of executable in exec/ rather than bin/
   - Reference post_avblflds_comm.xml rather than post_avblflds.xml

Did not update global runscript as this appears to be unsupported anyway

* Should not try to set NETCDF environment variable; if it was not already taken care of in the configure step something has already broken anyway

* Convert clean and compile scripts to bash to match other scripts (and avoid using the non-recommended csh varieties). Also a bit of cleanup of my sloppy handling of directory switching in these scripts

* One more csh->bash change: need to use !-s test instead of -z

* A few more tidying changes for clean: restore use of printf to get newlines, echo all the clean -a remove statements

* Allow ncep_post compilation from ./compile script by providing argument

* Removing the last of the comupp remnants

* Fix dumb mistake: need to actually create the exec directory we want to use!

* Add Darwin, gnu stanza to configure.defaults

* Accidentally removed last NULL stanza from configure.defaults; this could cause weird failures

* Prepping configure architecture to allow individual locations of NCEP libs to be specified

 - Rather than just setting NCEPLIB_DIR in configure.upp, now use that environment variable
   to set the library and include files in configure.upp
 - Remove old, obsolete definition of WRF_DIR in configure.upp

* One last overhaul of configure system

 - Add framework (but not functionality) for NCEP libraries to be linked individually
 - Handle the inclusion of NCEPLIBLIB and NCEPLIBINC in configure script rather than Config.pl
   - This will allow easier handling of multiple library and include paths once the full functionality is added
 - Gracefully handle unsupported platforms; if OS/MACH combo is not available don't even use Config.pl

* Forgot to remove some debug prints from configure script

* Continuing overhaul of configure system to allow linking of libraries individually

 - Set up array of required directories, and remove directories as they are detected.
   If all required directories are found with the appropriate files, NCEPLIBS is not required
   - This is only completed for library files, not other required files
 - Fix sed issues that wouldn't substitute properly for strings with spaces in them
 - Add in an echo line that somehow got removed

* One final intermediate commit on new config system before the big finale

 - Forgot to add exit statements to failure conditions when library files are missing
 - Accidentally left some important lines commented
 - Fix some indentation

* Configure system now fully mix-and-match configurable for NCEP libraries

 - All include files now included as well. I'm kind of shocked at how few include files are actually necessary...
 - Use an array for directories where multiple files from the same library are needed
 - Remove some old comments and echo statements

* A few miscellaneous improvements to configure script

 - Explicitly reference bash rather than sh in shebang
 - A few more detailed comments
 - Remove unnecessary assignment of input argument

* More portable solution for GRIB2 table: use already existing params_grib2_tbl_new in top-level parm directory

* Fix locations of params_grib2_tbl_new and crtm coefficient files

* Adding version numbers and precision info to library names

Since UPP specifically needs 4-byte reals in its libraries we should specify this in the library names rather than leaving it ambiguous
This also follows standard EMC naming conventions so ideally we can use libraries from any source
Furthermore, if a different library version is desired, it can be specified using an environment variable at configure time

* Remove jasper requirement; this is obsolete since it is only needed for compiling GRIB2 libraries

* Add mods from develop

* Update dtc makefile to compile new routines

* Add check to configure script to ensure CRTM submodule has been checked out

* fix for filling a handful of 2d variables currently causing a divide-by-zero error when run in debug mode.
Currently filled with 'k' which fills with zeros
Needs to fill with 'll' which is what's being filled within the larger loop and different index value than 'k'

* Fix ID index in WRF-CHEM SMOKE block, which currently causes failed build in debug mode

* Modification to makefile for compiling new routines added from develop

* Remove blank line from params_grib2_tbl_new that causes memory fault for certain cases ran with GNU

* Add the flat file name (postxconfig-NT.txt) to fix the itag bug for GFS case.

* Change MXLVL back to 70 for COMMCODE in RQSTFLD.F

* Add if-statement for imp_physics when calling GSD VIS (dependency is that imp_physics=28)

* Fix the way that the parameter 'rg' is read in, should be read in from params.F

* Temporarily restoring the ability to run build_ncep_post.sh without an argument.

* Turn off 2 fields not available for ARW, which were causing seg faults during run time

* Initialize n_clouds=0 and print msg, when not defined for certain mp_physics

* 1) Initialize variables as zero that were not initialized for ARW, causing failures in debug mode
2) Comment out 2 lines in INITPOST.F that were causing failures in debug mode

* Add v4.1-beta UG

* Add new HWRF routine

* Allocate/deallocate HWRF variables

* Add HWRF variables

* Add cd10 and ch10 code for HWRF

* Add new HWRF vars to rqstflds

* Add new HWRF routine to community makefile

* Add NMM model for HWRF

* WRF-NMM has no data for certain fields at the boundary. Add code to mask out the outermost rows and columns if maptype==203

* Correct typo made when adding support for advected Ferrier-Aligo microphysics

* Add Himawari sensors

* Removing serial option for this release

* Better solution to avoid changing option numbering: if users select a serial option, output an error message

* Updated submodule to new tag v2.2.3.2_subset to include Himawari files

* Add Himwari sensors to list

* Fix typo in grib tables

* Change name of UPPV4.1 users guide

* Add link to Himawari fix files in run scripts

* Switch to updated Himawari fix files for testing

* Updates to v4.1 UG

* Fix Out of Bound Exception in GFSPOST.F (NOAA-EMC#100)

* Fix out-of-bound error in tpause routine in GFSPOST.F

* Fix use of undefined variables.

* Updating CRTM submodule tag to include Himawari fix file

* Added the FV3 netcdf option and updated the netcdf format check for FV3 option.

* Update run_unipost

* Update run_unipostandgempak

* Update run_unipostandgrads

* Update parameter files and remove some duplicate parameter files

* Update scripts with bug fix for FV3GFS data and minor file link corrections

* Minor updates to fields file info

* Add GOES 16/17 to GRIB2 table, update release tag in UG

* remove redundant line

* Add extra space character to obslist to fit himarwari

* Add Himawari-8 for grib2

* Link Himawari-8 coefficient files in run_unipost script

* Add new HWRF routine to EMC makefile

* Changed HWRF's CD/CH exchange coeff UPP IDs to 922 and 923 to avoid conflict with Himawari number set

* Set n_clouds to zero to avoid crashes. This got removed in merge somehow

* Remove old lyx doc files

* Remove old run scripts

* Initialize aerosol coeffs and remove mp check to avoid failures

* Add Himawari coefficients to list of crtm files to link

* Modify UPP IDs for Himawari fields to avoid conflict with other model output

* Increase MXFLDS to accommodate new Himawari IDs

* Fix index for Himwarai channel 7

* Add Orion and Odin back into build script

* Change lowercase o to uppercase O for orion

* Add Orion and Odin to list of machines

* Save DTC grib2 table and restore develop branch version to be default

Co-authored-by: Kate.Fossell <[email protected]>
Co-authored-by: Wen Meng <[email protected]>
Co-authored-by: Tracy <[email protected]>
Co-authored-by: Michael Kavulich, Jr <[email protected]>
Co-authored-by: kayee <[email protected]>
Co-authored-by: Michael Kavulich, Jr <[email protected]>
Co-authored-by: Tracy <[email protected]>
Co-authored-by: Kate Fossell <[email protected]>
Co-authored-by: Dusan Jovic <[email protected]>
lgannoaa pushed a commit to lgannoaa/global-workflow that referenced this issue Feb 9, 2022
@mkavulich @mark-a-potts
@climbfuji @hertneky @fossell @DusanJovic-NOAA @WenMeng-NOAA @kgerheiser @DomHeinzeller @aerorahul
Merging in changes from release/public-v1 (NOAA-EMC#141)
a51df0c 
* Initial spack/cmake version

* updated for umbrella build

* tweak to findnetcdf

* added include directory

* updated cmake

* changed to https for cmake submodule

* updated cmake submodule

* updated install directory

* added build for libnceppost.a

* modifications for macOS clang/gfortran build

* updated for gnu build

* udpated cmake submodule

* Add RST file for UPP v4.0

* Modifying introduction

* merged develop in and separated library from executable in build

* Update CMakeLists.txt files to support GNU compilers

* applied patch from Dusan

* Add conf.py for upp documentation

* Add index.rst for upp documentation

* Add readthedocs config file

* Modify name of main rst doc in index for readthedocs build test

* Change master file to index

* Edits for UFS documentation to remove WRF and grib1 references

* Add a readthedocs config file

* Mods to config and index files for use in readthedocs

* Update submodule pointer for cmake

* Remove old GNU makefiles with problematic names (only differing in case from existing files)

* Add files for GRIB2 table of fields

* Update .gitmodules, add branch = ufs_release_1.0 for cmake

* Update .gitmodules for testing, code review and merging

* Update include/lib flags for sigio, sfcio, nemsio

* Add REQUIRED attribute to find_package calls in CMakeLists.txt

* Comment out LAPACK dependency in CMakeLists.txt

* Revert change to .gitmodules, update submodule pointer for cmake

* sorc/ncep_post.fd/CMakeLists.txt: change GFSIO_INC to GFSIO_INC4

* Add capacity of detecting scaning mode north2south vs south2north in gaussian grid from Dusan.

* Re-factor CMake

* Fix library linking

* small fix to kyles refactor

* Add capacity of detecting scaning mode north2south vs south2north in gaussian grid from Dusan.

* Fix typo in sorc/ncep_post.fd/CMakeLists.txt

* Fix how Intel compile options with spaces in them are handled

* Update branch name for cmake submodule, update submodule pointer

* Update submodule pointer for cmake

* Update .gitmodules and submodule pointer for cmake, bugfixes for CMakeLists.txt

* Update submodule pointer for cmake

* fixes problem linking ncep_post with gnu/openmpi

* Update submodule pointer for cmake

* Revert .gitmodules change

* Bugfix: comment out debug print statement that can lead to out-of-bounds access; update submodule pointer for cmake

* Update submodule pointer for cmake

* OpenMP bugfix, use lowercase in find_package(CRTM)

* Fix post crash on macOS: use allocatable array

* Update submodule pointer for cmake

* Add UFS UPP rst documentation

* Update submodule pointer for cmake

* Rename g2tmpl_d to g2tmpl (NOAA-EMC#89)

* Update submodule pointer for cmake

* cleanup post

Change-Id: Ie52af5ff79ac4122e79d7a46e89ee2077188b0a4

* we dont depend on C HDF5 library. remove.

Change-Id: I26aa7c0bf7ed2783de1a9967d961d0260dee8b54

* use transitive properties. apply OpenMP flags if OpenMP is found. Formatting using cmake-format

Change-Id: Ic08ce6bc85a7d949c779ec597241c8cb4c20db86

* add debug gnu flags. compile_definitions does not like the quotes around long long, remove

Change-Id: Iccd5bb496944f75a79500729051dd571303cb50f

* Update CMakeLists.txt

* Update submodule pointer for cmake

* Update submodule pointer for cmake

* Add LGPL license to repository

* EMC_post is a Fortran only project. blockIO.c is not used, so do not include in building

* Update submodule pointer for cmake

* Bug fix for unary operator in INITPOST_GFS_NEMS_MPIIO.f. (NOAA-EMC#92)

* Remove old unused makefiles

* CMakeLists.txt: install postxconfig-NT-GFS-F00.txt and postxconfig-NT-GFS.txt in share directory

* Update version

@fossell says post is at version 8.0.0

* Update submodule pointer for cmake

* Fix Out of Bound Exception in GFSPOST.F (NOAA-EMC#100)

* Fix out-of-bound error in tpause routine in GFSPOST.F

* Fix use of undefined variables.

* Feature/cleanup (NOAA-EMC#95)

* cleanup post

Change-Id: Ie52af5ff79ac4122e79d7a46e89ee2077188b0a4

* we dont depend on C HDF5 library. remove.

Change-Id: I26aa7c0bf7ed2783de1a9967d961d0260dee8b54

* use transitive properties. apply OpenMP flags if OpenMP is found. Formatting using cmake-format

Change-Id: Ic08ce6bc85a7d949c779ec597241c8cb4c20db86

* add debug gnu flags. compile_definitions does not like the quotes around long long, remove

Change-Id: Iccd5bb496944f75a79500729051dd571303cb50f

* Update CMakeLists.txt

* EMC_post is a Fortran only project. blockIO.c is not used, so do not include in building

* Update version

@fossell says post is at version 8.0.0

* Revert "Feature/cleanup (NOAA-EMC#95)"

This reverts commit 7e9797b355d2b86ea9e274534f86adc42e866b95.

* remove unused compile definitions and update cmake pointer

Change-Id: Ie47cf16ebc25928bf30bfd05d4f25678219571a6

* Fix ID index in WRF-CHEM SMOKE block, which currently causes failed build in debug mode

* remove unnecessary commented line

* NetCDF static fix (#1)

* CMakeLists.txt: add MODULE to find_package calls

* Cleanup of NetCDF in CMakeLists.txt

* update cmake submodule pointer

Change-Id: I763882fd6ecc4b8cc64a60eddabccfdb7046040d

* Add MODULE to find_package(NetCDF) call (NOAA-EMC#3)

* update cmake submodule pointer

Change-Id: I69015efa425658645567e9d9f22d5e51301c1a0b

* Change version from 8.0.0 to 1.0.0

* fix the install path of compiled Fortran module files

Co-authored-by: Mark A Potts <[email protected]>
Co-authored-by: Dom Heinzeller <[email protected]>
Co-authored-by: Mark Potts <[email protected]>
Co-authored-by: Tracy <[email protected]>
Co-authored-by: Kate Fossell <[email protected]>
Co-authored-by: Dusan Jovic <[email protected]>
Co-authored-by: Wen Meng <[email protected]>
Co-authored-by: Dom Heinzeller <[email protected]>
Co-authored-by: Kyle Gerheiser <[email protected]>
Co-authored-by: Mark Potts <[email protected]>
Co-authored-by: Kyle Gerheiser <[email protected]>
Co-authored-by: Dom Heinzeller <[email protected]>
Co-authored-by: Tracy <[email protected]>
Co-authored-by: Rahul Mahajan <[email protected]>
Co-authored-by: WenMeng-NOAA <[email protected]>
Co-authored-by: Dusan Jovic <[email protected]>
lgannoaa pushed a commit to lgannoaa/global-workflow that referenced this issue Feb 9, 2022
@EricJames-NOAA @hu5970
@christinaholtNOAA @jaymes-kenyon @SamuelTrahanNOAA
NOAA GSL UPP updates (NOAA-EMC#413)
0dc3c0c 
* Turn on GSD cloud ceiling calculation for RRFS dev.

* Updates to UPP for RRFS applications (NOAA-EMC#3)

* Updates to UPP for RRFS applications:
1) Adding a RRFS-specific .xml control file and a corresponding .txt flat file.  Note that script changes (pending) are needed to leverage the new flat file.  However, this code will work in current real-time configurations.
2) Adding GSL experimental ceiling diagnostics, GSL visibility diagnostic, and GSL sea-level pressure reduction (MAPS).  Also adding TKE and aerosol number concentrations.
3) Code clean-up for ceiling-related diagnostics; added comments, etc.
4) Removing several non-needed variables, originally inherited from FV3-SAR community configuration.

* Updating UPP control files to specify GRIB2 generating center as "noaa_fsl_boulder" and the generating process as "hrrr".  The "hrrr" specification is temporary, and will eventually be switched to "rrfs" once required changes to the "NCEPLIBS-g2tmpl" library are available. (NOAA-EMC#4)

* Fix some out-of-bounds reads that caused the RRFS UPP to crash. (NOAA-EMC#5)

* Adding README file (NOAA-EMC#7)

* Adding README file to describe process of making a "flat" file.

* Updates to README to improve explanation of input/output files.

* Code to read in Flash Flood Guidance (FFG) and Average Recurrence Interval (ARI) precipitation datasets for comparison with model QPF within UPP.

* Fixed a syntax error in SURFCE.f

* Getting rid of GRIB1 output option to be consistent with rest of code.

* Changing field numbers to avoid conflict with existing RRFS-dev1 fields.

* Putting exceedance grids in flat files for testing in RRFS UPP.

* Corrected the 1h and run total precip names for calculating exceedances in SURFCE.f

* Bug fix in SURFCE.f if statements.

* Removing changes to RQSTFLD.F since GRIB1 is no longer used in UPP.

* Merging NOAA-GSL development on top of NOAA-EMC UPP for testing.

* Correcting minor typos in SURFCE.f to allow testing.

* Update code based on testing with RRFS cases.

* Update part of the code based on current EMC develop branch for comparing the test results with the merged version.(NOAA-EMC#9)

* Fixed several bugs in the code.

* Modifications to SURFCE.f to check for existence of FFG files.

* Bug fixes for FFG file existence check, and changes to handle rotated lat-lon grid interpolation for FFG

* Bug fixes for FFG existence checks in SURFCE.f

* Another bug fix for SURFCE.f

* Updating XML and flat txt files to include a 65th vertical level to be consistent with updated FV3LAM model with higher model top. (NOAA-EMC#13)

* Code cleanup for QPF - FFG comparison.  Comparison put into subroutine.

* Cleanup of SURFCE.f; moving the FFG comparisons into a subroutine.

* Final cleanup of exceedance code for QPF vs FFG.

* Removing some commented out variable declarations.

* Additional cleanup recommended by Ming: we really only need two exceedance variables; one for 1h FFG and one for run total FFG exceedances.

* Further cleanup of FFG code, simplifying to two fields (1h acc and run total acc)

* Adding ARI comparison fields for 2y, 5y, 10y, and 100y ARIs.

* Changes to output 9 soil levels from FV3LAM if we are running 9 level RUC LSM.

* Adding flat txt file for UPP.

* Commenting out the use of the ARI exceedances for now.  We can switch them on later.

* Bug fix in INITPOST_NETCDF.f : need to use both ncid2d and ncid3d in this subroutine!

* Adding NOAA-GSL code changes on top of latest NOAA-EMC UPP.

* Couple of bug fixes in NOAA-EMC code.  Bugs were leading to PRMSL and -10C REFD being all zeroes.

* Cleaning up code to get rid of unnecessary differences from EMC.

* Putting all new GSL variables into EMC's unified post_avblflds.xml.  Note that EMC's unified post_avblflds.xml does not validate using the avblflds Schema.

* Updating postconfig-NT.txt file for GSL RRFS based on merged post_avblflds.xml file.

* Adding RRFS control files to makefile.

* Changing back scale for WEASD_ON_SURFACE to previous default, thanks to suggestion from Wen Meng.

* Reverting name of cldfra based on feedback from Eric Aligo.

* Reverting changes in fv3lam_post_avblflds.xml since GSL new variables are now included in post_avblflds.xml

* Changing experimental ceiling level type from "ceiling" to "cloud_ceilng"

* Updating 3drtma_postcntrl.xml with revised name for GSD_EXP_CEILING.  This also affects postxconfig-NT-3drtma.txt.  postxconfig-NT-fv3lam_rrfs.txt also changed due to changes in post_avblflds.xml

* Introducing if statement for call of NGMSLP, to avoid calling unless it is needed.

Co-authored-by: Ming.Hu <[email protected]>
Co-authored-by: Christina Holt <[email protected]>
Co-authored-by: Christina Holt <[email protected]>
Co-authored-by: Jaymes Kenyon <[email protected]>
Co-authored-by: Samuel Trahan (NOAA contractor) <[email protected]>
@aerorahul
Copy link
Contributor

manage_externals needs to be tested on Orion w/ Gerrit hosted submodules.
@aerorahul to test.

@aerorahul aerorahul self-assigned this Mar 8, 2022
@KateFriedman-NOAA KateFriedman-NOAA removed their assignment Mar 16, 2022
zhanglikate pushed a commit to zhanglikate/global-workflow that referenced this issue Oct 6, 2022
@climbfuji
Merge pull request NOAA-EMC#3 from climbfuji/add_sas_and_satmedmf_reg…
bd76a74 
…ression_tests

Add regression tests for sas deep/shallow convection and satmedmfvdifq (updated version of satmedmfvdif)
zhanglikate pushed a commit to zhanglikate/global-workflow that referenced this issue Oct 6, 2022
@climbfuji
Merge NEMSfv3gfs gsd/develop into ufs-weather-model dtc/develop, squa…
6fc17ca 
…shed commit of the following:

commit a9afb3607115ba35cc3c841bf48d410a048912c8
Merge: 6c9a70dc 2d13e99d
Author: Dom Heinzeller <[email protected]>
Date:   Thu Nov 21 15:44:02 2019 -0700

    Merge pull request #279 from climbfuji/update_submodule_pointers_rdlai

    Initialize Leaf Area Index (LAI) from climatology and other submodule updates

commit 2d13e99dc0c5a39ece155e6ac6eb2bd5ddcc1037
Author: Dom Heinzeller <[email protected]>
Date:   Thu Nov 21 15:43:07 2019 -0700

    Update submodule pointers for ccpp/physics and FV3

commit 1653ff116ddca30b690a7375006139eab55237de
Author: Dom Heinzeller <[email protected]>
Date:   Thu Nov 21 12:59:39 2019 -0700

    Update submodule pointers for FV3 and ccpp/physics

commit caed402a8f5a6a535e58284f63f678e692f341d9
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 20 16:24:56 2019 -0700

    Update submodule pointer for stochastic physics to point to the head of the master branch

commit 38c66d903797bdc7dbbc99589badece212a63412
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 20 16:13:30 2019 -0700

    Update FMS to the head of the GFS-FMS branch

commit 29fbfcad795536eb763499ea98e9596d03c9d483
Author: Dom Heinzeller <[email protected]>
Date:   Wed Nov 20 16:13:08 2019 -0700

    Update submodule WW3 to point back to the NOAA-EMC version, set correct hash

commit 6c9a70dcdf5da8f1f678ad17523ef7533291062f
Merge: 8b1bd280 fd8b7b48
Author: Dom Heinzeller <[email protected]>
Date:   Tue Nov 19 20:54:26 2019 -0700

    Merge pull request #278 from climbfuji/add_gsd_sar_regression_test

    gsd/develop: add GSD SAR regression test

commit fd8b7b487a7b6a2cb3ad0a2e395aaf874b6efd8f
Author: Dom Heinzeller <[email protected]>
Date:   Tue Nov 19 20:53:00 2019 -0700

    tests/tests/fv3_ccpp_gsd_sar: bugfix, correct name of control directory

commit 86cc553107ace9e66429fbfee6e6e2a1dca88c73
Author: Dom Heinzeller <[email protected]>
Date:   Mon Nov 18 14:39:06 2019 -0700

    tests/tests/fv3_ccpp_gsd_sar: correct list of files to check

commit 43dbf0504cf5f86b9ad416e2d6358043df3863fb
Author: Dom Heinzeller <[email protected]>
Date:   Mon Nov 18 09:22:07 2019 -0700

    Add regression test for GSD SAR

commit 8b1bd2805a2543bb1a434dcc0718ca89e27ba284
Merge: c73f665b 13329bf9
Author: Dom Heinzeller <[email protected]>
Date:   Sat Nov 2 06:08:45 2019 +0900

    Merge pull request #277 from climbfuji/gsd_develop_update_submodule_pointer_ccpp_physics_20191102g

    gsd/develop: update submodule pointer for ccpp-physics 2019/11/01

commit 13329bf9b7d8191a4e85789d52f4a6174bf61c50
Author: Dom Heinzeller <[email protected]>
Date:   Sat Nov 2 06:06:24 2019 +0900

    Update submodule pointer for ccpp/physics

commit c73f665b5838a2db86ba5bf65157c89f4ed90cc5
Merge: fafa77ee 0f0778d4
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 28 12:54:28 2019 +0900

    Merge pull request #276 from climbfuji/gsd_debug_test_and_submodule_pointer_update_20191028

    gsd/develop: add CCPP GSD suite debug test, reduce timestep for Thompson MP tests, update submodule pointers

commit 0f0778d4cb84150c2b1b3a2e0fe7501b897f2d9f
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 28 12:39:54 2019 +0900

    Update submodule pointer for ccpp/physics

commit c3c0379e1cb10b7060095b9a85c045d6b3058e8b
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 28 12:33:09 2019 +0900

    Add new regression test for GSD suite in DEBUG mode

commit cc2706d9c35fbbd69048c244dc0997107b9a3c78
Author: Dom Heinzeller <[email protected]>
Date:   Fri Oct 25 11:14:30 2019 +0900

    Reduce timestep for regression tests using Thompson MP from 1200s to 600s

commit fafa77eeae3696ff1fd9922b88becd3644b9dd55
Merge: f3d1f6d2 e6b48fbe
Author: Dom Heinzeller <[email protected]>
Date:   Thu Oct 24 11:00:48 2019 +0900

    Merge pull request #275 from climbfuji/gsd_develop_update_submodule_pointer_20191024

    gsd/develop: update submodule pointer, remote theia

commit e6b48fbea416696a5b23f6910df2697334c8d656
Author: Dom Heinzeller <[email protected]>
Date:   Thu Oct 24 10:57:13 2019 +0900

    Update submodule pointer for ccpp/physics

commit 1bc10a8b7da94ed4d3648157ad9a8dfcef25180a
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 21 08:20:15 2019 +0900

    Update submodule pointer for ccpp-physics

commit b583bd011b9e4139c3ff9efc7fa0240554d39a28
Author: Dom Heinzeller <[email protected]>
Date:   Mon Oct 21 08:19:12 2019 +0900

    tests/rt_ccpp_gsd.conf: remove theia

commit f3d1f6d212199af9eb47cd4e723eecbbdbd1f76c
Merge: eac6d996 deec3095
Author: Dom Heinzeller <[email protected]>
Date:   Sun Oct 13 14:59:39 2019 +0900

    Merge pull request #265 from climbfuji/update_submodule_pointers_20191011_1

    gsd/develop: update submodule pointers for FMS and ccpp/physics

commit deec3095e43efd3b1599052525a631faea17d7d0
Author: Dom Heinzeller <[email protected]>
Date:   Fri Oct 11 08:01:14 2019 +0900

    Update submodule pointers for ccpp/physics and FMS

commit eac6d996d84085d4010e8e1bfc8dff1855f9e21f
Merge: 49f6c48e e49075d7
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 14:21:16 2019 -0600

    Merge pull request #257 from climbfuji/update_submodule_pointers_gsd_develop_20190924

    gsd/develop: update submodule pointers 2019/09/24

commit e49075d70b330b2a7dfa907d9bc7ad6e97a48992
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 14:19:43 2019 -0600

    Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics

commit 49f6c48edc94ba9d9ac0c143b6068ce56159cb00
Merge: 5ea40b23 221bd404
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 12:56:42 2019 -0600

    Merge pull request #256 from climbfuji/update_gsd_develop_from_gmtb_develop_20190924

    Update gsd/develop from gmtb/develop 2019/09/24

commit 221bd404496a25f133b1f4e7aaf068225dfd9446
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 12:51:44 2019 -0600

    Update CODEOWNERS and .gitmodules for gsd/develop, update submodule pointers

commit e30fc6c67c3c98ceab5b0859fe47780de0859b91
Merge: e7691783 3042e609
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 10:53:31 2019 -0600

    Merge pull request #255 from climbfuji/cleanup_remove_thompson_satadj

    gmtb/develop: cleanup work 2019/09/24

commit 3042e6090e4e4b6d3f22d2e3ee0677df057263ae
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 24 09:52:12 2019 -0600

    Update submodule pointer for ccpp-physics, remove Thompson MP + saturation adjustment tests

commit e7691783692215fb713ba60ae2799f33a2147efe
Merge: f1b4c707 d5051cd2
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 23 10:16:50 2019 -0600

    Merge pull request #254 from climbfuji/update_submodule_pointers_20190923

    Update submodule pointers 2019/09/23

commit d5051cd2f28c7cb2df686db02664f98584c3fb70
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 23 10:15:15 2019 -0600

    Update submodule pointers following https://github.com/NCAR/NEMSfv3gfs/pull/251 et al.

commit f1b4c70787e949ac3557a4f4f89e549574c4065c
Merge: 4d78478e e86179ec
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 23 09:33:06 2019 -0600

    Merge pull request #251 from climbfuji/gmtb_develop_update_from_master_20190920

    gmtb/develop: update from master 2019/09/20, remove TRANSITION mode

commit e86179ec519baba659f29c71ea119cf010e6020c
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 20 19:59:53 2019 -0600

    Update submodule pointer for ccpp/physics

commit 136b3af34a6c4c9c759fa13f49ca0009e8e9d1c4
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 20 08:55:40 2019 -0600

    Remove TRANSITION mode

commit 20a5de0f2bab4ddea82df0bb2682738244ac86f0
Merge: c97254f5 31e98b23
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 20 07:41:07 2019 -0600

    Merge branch 'master' of gerrit:NEMSfv3gfs into HEAD

commit c97254f5dc9e84281fa26098b603e3436cead0ac
Merge: 4d78478e fadc8080
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 20 07:24:46 2019 -0600

    Merge branch 'master' of https://github.com/NCAR/NEMSfv3gfs into HEAD

commit 4d78478e98a4aa1e547dc714b9dd7b895f71f351
Merge: af03bb30 4c1b7e7b
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 19 16:10:13 2019 -0600

    Merge pull request #250 from climbfuji/update_submodule_pointers_20190919

    Update submodule pointers for FV3, ccpp-physics, ccpp-framework 2019/09/19

commit 4c1b7e7b99568e8e3d19c5727e6ba41b2c3ae2d7
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 19 16:08:16 2019 -0600

    Update submodule pointers for FV3, ccpp-physics, ccpp-framework

commit af03bb30daac3be4b6aca41043612743f66d618c
Merge: 80ff65a6 5aab0bee
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 19 14:40:18 2019 -0600

    Merge pull request #249 from climbfuji/myj_with_dom_mods

    gmtb/develop: MYJ PBL/SFC, Noah MP, Cheyenne modulefiles, cleanup rt*.conf

commit 5aab0bee5e2952529cafb2191f0b8c6f53ea4f43
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 18 13:54:29 2019 -0600

    Update submodule pointer for FMS and ccpp/physics

commit 1d09c3b363c6c0ac05cabe4ce6ec2d4cc86499ae
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 18 13:49:09 2019 -0600

    Bugfix for modulefiles/macosx.gnu/fv3

commit 04321dc32e522e2ece1ddd952c5771922b45ce6a
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 16 15:40:52 2019 -0600

    Update submodule pointers for FV3 and ccpp/physics

commit 2bc9874472eb499d7381a37782fbf3ac04af266b
Author: Dom Heinzeller <[email protected]>
Date:   Mon Sep 16 15:37:57 2019 -0600

    ccpp/CMakeLists.txt: for GNU and REPRO mode, add -g to compiler options

commit 9f5a6ca3be704d40d2473f5bb8017195dbd5d93e
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 17:21:26 2019 -0600

    Add hera.intel to rt_ccpp_caps.conf, rt_ccpp_gmtb.conf, rt_ccpp_gsd.conf

commit a747a0687153c1e69f8a741bcbdbc67eff766943
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:43:45 2019 -0600

    Update submodule pointers for FV3, ccpp-framework, ccpp-physics

commit 9091411f3fe01d44701545ed75d0b5fc90c313b0
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:43:24 2019 -0600

    Update ESMF version for macOS and linux platforms

commit f1c3c4a37351e7097505cfe5ca136e4b2d5e5d2e
Merge: 1aedd2bb 80ff65a6
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:41:38 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into myj_with_dom_mods

commit 1aedd2bb06899f3c273fb151d54e6c9c0b2bf2d8
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:25:52 2019 -0600

    tests/rt_ccpp_gmtb.conf: formatting changes

commit 80ff65a69a144127015aa1703a73dbc123df008e
Merge: a6b70173 4183ee57
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:23:34 2019 -0600

    Merge pull request #246 from climbfuji/gmtb_develop_metadata2html_batchconvert

    gmtb/develop: metadata2html batch processing

commit 141f41e44c3977287808bb4d08f8adfeb2ecbcc1
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:10:38 2019 -0600

    Remove redundant regression test configurations

commit 940b7d1a6de99438a9e5a33bab836dab52e8a0a6
Merge: 26acc72b 3c961fa0
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:08:26 2019 -0600

    Merge branch 'noahmp' of https://github.com/grantfirl/NEMSfv3gfs into myj_with_dom_mods

commit 26acc72b9c895c28f213a73aa17dbe4a953fdaab
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:01:40 2019 -0600

    Combining CCPP GFDLMP namelist template with MYJ changes, add default values to tests/default_vars.sh

    Remove separate regression test config for MYJ, add to rt_ccpp_gmtb.conf

commit abf19ed89d7d0a84840cfccf759d2cad7b8c5526
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 16:00:17 2019 -0600

    modulefiles/cheyenne.*/fv3: update ESMF to 8.0.0bs48, use modules instead of setting environment variables manually

commit 8a1cc14102eab44fdda81daaec0c0f6ba6a60a51
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 15:59:30 2019 -0600

    ccpp/suites/suite_FV3_GFS_2017_myj.xml: update with stochastic_physics and UGWD changes

commit 3c961fa0bcf21dc5e5020b1a326caf47c580c58b
Author: Grant Firl <[email protected]>
Date:   Fri Sep 13 14:52:04 2019 -0600

    add noahmp tests to rt.conf and rt_ccpp_gmtb.conf

commit db00f41e14c62aeadad503119e95f287562bd4d7
Merge: b34799b2 282ad6b6
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 10:46:04 2019 -0600

    Merge branch 'myj_from_qingfu' into detect_machine_cheyenne_update_20190912

commit a6b701733c4b1571a8a54c12db2142b3b5f9b815
Merge: 079b0b14 b34799b2
Author: Dom Heinzeller <[email protected]>
Date:   Fri Sep 13 09:37:14 2019 -0600

    Merge pull request #247 from climbfuji/detect_machine_cheyenne_update_20190912

    gmtb/develop: update tests/detect_machine.sh for Cheyenne

commit b34799b26f6c956adc313027ffd6c51204e19acb
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 12 21:17:03 2019 -0600

    tests/detect_machine.sh: detect cheyenne with and without .ib. in hostname

commit 4183ee576bfedea4fec85c72d3f0d8f26c2900e7
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 12 15:38:08 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: remove outdated version number from comment

commit 92d6056d8b90d98e3ae2ffca275d5767f634b449
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 12 08:45:09 2019 -0600

    Update submodule pointer for ccpp/framework

commit 25486e833de3d752824ef391474f939daf370ca4
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 12 08:44:55 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add new variable METADATA_HTML_OUTPUT_DIR required for metadata2html batch processing

commit d5dff46bb109e9a9c4707941013db1e47f221760
Author: Grant Firl <[email protected]>
Date:   Tue Sep 10 17:42:35 2019 -0600

    remove stochastic physics calls from suite_FV3_GFS_2017_gfdlmp_noahmp.xml

commit d114de7b13be53593146c39cacf939affda4c56f
Merge: 2c378470 079b0b14
Author: Grant Firl <[email protected]>
Date:   Tue Sep 10 17:38:07 2019 -0600

    Merge branch 'gmtb/develop' into noahmp

commit 079b0b14c8dabc0e510119de4be1ab0ec0c39dc2
Merge: c28e4020 20a8a674
Author: Dom Heinzeller <[email protected]>
Date:   Sun Sep 8 20:44:52 2019 -0600

    Merge pull request #245 from climbfuji/gmtb_develop_update_submodule_pointers_20190908

    gmtb/develop: update submodule pointers 2019/09/08

commit 20a8a674fd496965423d07936039a355df1da0ff
Author: Dom Heinzeller <[email protected]>
Date:   Sun Sep 8 20:42:53 2019 -0600

    Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics

commit c28e4020d3616f8b2de6d42f7b15e49a34f6e8fa
Merge: 5b120105 69b55a7c
Author: Dom Heinzeller <[email protected]>
Date:   Sun Sep 8 20:32:26 2019 -0600

    Merge pull request #243 from climbfuji/gmtb_develop_monster_merge_20190904

    Convert all schemes to new metadata, merge gsd/develop, update from Vlab, update of CCPP physics with IPD physics changes, GNU portability

commit 2c378470a94f672d726a865ee67fc18e61e5e86c
Author: Grant Firl <[email protected]>
Date:   Fri Sep 6 15:13:34 2019 -0600

    move calculation of precipitation rates for NoahMP to pre-NoahMP scheme rather than GFS_MP_generic_post for B4B testing

commit 69b55a7c7c39ece01f97fef334012cbcc5a6e079
Author: Dom Heinzeller <[email protected]>
Date:   Thu Sep 5 21:48:25 2019 -0600

    Update submodule pointer for ccpp/framework

commit e67e618bb89dd396235e5dff186d11b458169b0b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 21:18:48 2019 -0600

    Bugfix for GSD suites: replace gwdps_pre with GFS_GWD_generic_pre

commit fadc80809693b39557f8ab4b75329bbf0106c519
Merge: 64f209ce 097468ca
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 16:45:51 2019 -0600

    Merge pull request #244 from climbfuji/github_master_update_submodule_pointer_FV3_20190904

    GitHub master: update submodule pointer for FV3

commit 097468ca99392eb208ee90039f3fc9b1e07ce903
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 16:44:20 2019 -0600

    Update submodule pointer for FV3

commit 64f209cee5a7f364d5a93df27ad8e071f7f4682d
Merge: 45b389ae 8fe8d004
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 16:41:54 2019 -0600

    Merge pull request #242 from climbfuji/github_master_update_from_vlab_master_20190904

    Update GitHub master from Vlab master 2019/09/04

commit a105b2c92f91557b74cf439740628cfbddbc845c
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 15:41:35 2019 -0600

    Update submodule pointers for FV3 and ccpp/physics

commit d5c4e5faa2994d2d75c48d27121ccb5bc46b9c9e
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 15:41:18 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add new dependency ccpp/physics/physics/samfaerosols.F

commit bd52519b589955ecf40e8e3dc2dfe6b087419210
Author: Grant Firl <[email protected]>
Date:   Wed Sep 4 13:36:21 2019 -0600

    add noahmp-specific rt.conf

commit 7d142eb30608f14e8a2a7995f8f37bd8b52445af
Author: Jun Wang <[email protected]>
Date:   Tue Sep 3 01:39:37 2019 +0000

    NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency

    Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951

commit da04e9ae8ecd7448732903b138ae29a675509b37
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 11:04:02 2019 -0600

    ccpp/suites/suite_FV3_GFS_v15_gf.xml: fix merge conflict

commit 3b81d224bdb9b33a7b5743a6c7f1bd836d46cb26
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 11:00:34 2019 -0600

    ccpp/suites/*.xml: remove stochastic_physics and stochastic_physics_sfc schemes from new SDFs

commit 3c247950ad1ddcfe34a3f9a53f53127309a5b3d1
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 10:57:18 2019 -0600

    Update submodule pointers for ccpp/framework and ccpp/physics

commit 8fe8d0041c672b12da0e360f59ab2aa746efbef2
Author: Jun Wang <[email protected]>
Date:   Tue Sep 3 01:39:37 2019 +0000

    NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency

    Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951

commit 7b9cd36b2d17dfbe7693b1669077c7a07b4b8342
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 10:11:08 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add sfc_cice scheme

commit 79e5cd20c3b40effb990573a013e040b03ccb08b
Merge: b9e05586 5ea40b23
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 09:18:44 2019 -0600

    Merge branch 'gsd/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion

commit b9e05586d33eac6902fb3e64d7646489c3b25fe1
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 08:22:02 2019 -0600

    modulefiles/macosx.gnu/fv3: improve setting compilers so that it works when MPIF90 etc are not set

commit ceef678c966308e22ba2d08fd26a6526e6f4064b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Sep 4 08:18:39 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add ccpp_types to converted metadata dictionary

commit 0aafc0a34ed6649d8e54d058f96e83712162bbda
Author: Grant Firl <[email protected]>
Date:   Tue Sep 3 15:08:02 2019 -0600

    update SDF using noahmp

commit 99626b8c2da1a22d6abb9da32cc3fc9168614ba7
Merge: 235b712b 5b120105
Author: Grant Firl <[email protected]>
Date:   Tue Sep 3 15:06:00 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into noahmp

commit caa9037ab43b21fd727d1d030b4cef9ecab7f1d3
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 10 08:05:30 2019 -0600

    compsets/fv3.input: set variables DO_SPPT, DO_SHUM, DO_SKEB, DO_SFCPERTS for fv3_stochy test

commit bf8c2ded4b6779c9e1446507057f38a384b98167
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 9 14:33:37 2019 -0600

    parm/input.nml.IN, tests/tests/fv3_stochy: add new namelist options do_sppt, do_shum, do_skeb, do_sfcperts to namelist template, set for fv3_stochy test

commit 85b7a7a2c32a19971ac89255f9b9d595829902a7
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 9 14:31:48 2019 -0600

    ccpp/config/ccpp_prebuild_config.py, ccpp/suites/*: remove stochastic physics from CCPP config and suite definition files

commit d33df0427b1d6df35ff92edcab2e152d08499f15
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 9 14:30:55 2019 -0600

    Add new submodule stochastic_physics, located in directory with same name

commit c061af4a2d8f1a8318ca40aacdfb25ccec353f15
Merge: 2483ed32 5b120105
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 3 09:22:32 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion

commit 5b1201056ec3187c04f7edb9d8afaac2465b4e9b
Merge: 0ab90a12 fd7d0f1e
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 3 09:19:54 2019 -0600

    Merge pull request #239 from climbfuji/gmtb_develop_update_from_master_20190830

    gmtb/develop: update from master 2019/08/30

commit 2483ed324e53de72fa67de24cb1d04d492b1c862
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 3 08:31:04 2019 -0600

    ccpp/build_ccpp.sh modulefiles/gaea.intel/fv3: update for gaea following wcoss_cray to avoid setting NETCDF and HDF5 in modulefile

commit 45b389ae0e2fea91bb71edcceef481601827a5c5
Merge: 257f2a2e ce0c61f6
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 3 08:23:51 2019 -0600

    Merge pull request #240 from climbfuji/update_submodule_pointer_in_NEMSfv3gfs_20190903

    master: update submodule pointers for FV3, NEMS, WW3

commit ce0c61f644c95afc7f8dfa49ce6678d40356f54b
Author: Dom Heinzeller <[email protected]>
Date:   Tue Sep 3 08:22:21 2019 -0600

    Update submodule pointers for FV3, NEMS, WW3

commit 257f2a2eec6f9ca902c4a2aac9fd312f24470d9b
Merge: a1a54d1f 95583de5
Author: Laurie Carson <[email protected]>
Date:   Mon Sep 2 14:15:08 2019 -0600

    Merge pull request #238 from climbfuji/update_from_noaaemc_dev_20190830

    Update GitHub NCAR master from Vlab master

commit fd7d0f1e022c60a010691a51dbc866b82a48c1c1
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 15:43:28 2019 -0600

    Update submodule pointer for ccpp-physics

commit 15c64a190aa7af38dce3a9154d7bae9bbe1e381c
Author: Jun Wang <[email protected]>
Date:   Tue Aug 27 20:23:05 2019 +0000

    NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2)

    Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d

commit 50962a88c93b90930d747e1e007f10c21b042fdb
Author: Jun Wang <[email protected]>
Date:   Sun Aug 25 02:56:05 2019 +0000

    NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3

    Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9

commit 5f481c8f5a36a2c0ae56dd02645bd5ec591dcc6f
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 15:33:53 2019 -0600

    Update .gitmodules to point to NCAR repro and branch gmtb/develop for new submodule WW3, update submodule pointer

commit 872693bea7e160edb478b05cfb68e96e3671ec8c
Author: Jessica.Meixner <[email protected]>
Date:   Tue Aug 20 12:10:34 2019 +0000

    NEMSfv3gfs: this commit refs #65894, adding WW3

commit 95583de5ce6c4cbb83abe35b969476ba88628cca
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 11:29:32 2019 -0600

    Add default branch develop for WW3 and update submodule pointer

commit a2fc15ec2140ef5b5e80dc4bd4b2d88430a9d59d
Author: Jun Wang <[email protected]>
Date:   Tue Aug 27 20:23:05 2019 +0000

    NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2)

    Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d

commit c15a5f76e78c08c68e3afb0d5e5194f55dcdd855
Author: Jun Wang <[email protected]>
Date:   Sun Aug 25 02:56:05 2019 +0000

    NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3

    Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9

commit 100dc801cb2901618f778720c6ad4426070ce4c7
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 10:17:47 2019 -0600

    Update .gitmodules so that WW3 points to the NCAR repository

commit 25aa6fe7d55240903a132fc81dd9fb9b8aca0631
Author: Jessica.Meixner <[email protected]>
Date:   Tue Aug 20 12:10:34 2019 +0000

    NEMSfv3gfs: this commit refs #65894, adding WW3

commit 0ab90a125b63b89d29bb73e0f640000b6c5b74a0
Merge: cee7b3fe b77f1471
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 07:42:51 2019 -0600

    Merge pull request #237 from climbfuji/gmtb_develop_update_submodule_pointers_20190830_1

    gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics

commit b77f14719ac17b564f85d69383c99b8b161de817
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 07:40:55 2019 -0600

    Update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics

commit cee7b3fe354e07a29dbc9fa49235d909f4cf528a
Merge: f4671a1c d02d0c16
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 30 07:39:01 2019 -0600

    Merge pull request #234 from climbfuji/bugfix_rt_conf

    gmtb/develop: bugfix for rt.conf

commit a1a54d1f5159aa927ac4d4b01abaa6548040ff52
Merge: 8a1e235d ed0c436a
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 29 15:32:08 2019 -0600

    Merge pull request #236 from grantfirl/master

    add Julie as codeowner

commit ed0c436ad2aa1c52a6a6a5fa1ca7a9fc210956d3
Author: Grant Firl <[email protected]>
Date:   Thu Aug 29 15:00:06 2019 -0600

    add Julie as codeowner

commit f4671a1c9f394609f33e0f04a893ab1a8147f8bb
Merge: ea22d467 a667940f
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 29 14:58:30 2019 -0600

    Merge pull request #235 from grantfirl/gmtb/develop

    add Julie as codeowner

commit a667940f9cfff12e41cb5134f86e66babc76081f
Author: Grant Firl <[email protected]>
Date:   Thu Aug 29 14:52:42 2019 -0600

    add Julie as codeowner

commit d02d0c1679ffd3b57b2d2d049f86efdc531b51fd
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 29 08:06:47 2019 -0600

    Update submodule pointers for FV3 NEMS ccpp/physics

commit 65238966d6c574b314bc1b0e487e59f78d9b5552
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 29 08:06:02 2019 -0600

    tests/rt.conf: bugfix, correct name of suite FV3_GFS_2017_gfdlmprad_gwd to FV3_GFS_2017_gfdlmp_gwd

commit 282ad6b657ff250eefba8092975b484681479d8a
Author: Qingfu Liu <[email protected]>
Date:   Wed Aug 28 19:53:24 2019 +0000

    correct file content tests/tests/fv3_ccpp_gfs_myj

commit 29993a06e32ea08b588bed93d7e088ea386daf7c
Author: Qingfu Liu <[email protected]>
Date:   Wed Aug 28 19:49:13 2019 +0000

    correct file content tests/tests/fv3_ccpp_gfs_myj

commit 5ea40b233539ed0b8a86d8ef54ed59cba4c89621
Merge: e06da970 01f6a0f8
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 16:40:43 2019 -0600

    Merge pull request #232 from climbfuji/gsd_develop_update_submodule_pointers_20190827

    gsd/develop: update submodule pointers for FV3 and ccpp/physics

commit 01f6a0f87727751a8252a576bceed7bc5b9729a7
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 16:39:04 2019 -0600

    Update submodule pointers for FV3 and ccpp/physics

commit ea22d467cb4e6289768ca625133f68d803cc4772
Merge: 8ba3d4ae 3150c4b4
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 16:32:58 2019 -0600

    Merge pull request #231 from climbfuji/update_submodule_pointers_gmtb_develop_20190827

    gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/physics

commit 3150c4b432ac93119c578a1d0cb12a7b0e1e3fd6
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 16:30:38 2019 -0600

    Update submodule pointers for FV3 NEMS ccpp/physics

commit 8ba3d4ae5bfd786895d54c26f398821d28601821
Merge: 6aba4551 f91d7846
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 15:45:47 2019 -0600

    Merge pull request #230 from climbfuji/hera_update_20190827

    gmtb/develop: update hera config, enable regression testing

commit f91d78461f1608bfdbe1de0d38a9527f8381cea7
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 15:04:42 2019 -0600

    Update submodule pointer for NEMS

commit 235b712ba15d59c4d56aa990d3a9edeb30999496
Author: Grant Firl <[email protected]>
Date:   Mon Aug 26 15:40:00 2019 -0600

    add CCPP-based NoahMP test to RTs for rt_ccpp_gmtb.conf (plus new SDF based on suite_FV3_GFS_2017_gfdlmp.xml)

commit e74e0d2ebd6430e39c2f869c7241be858776f385
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 13:53:55 2019 -0600

    Update submodule pointer for NEMS

commit 290a484f1e3be763aced44c2dfd099c6d832ce2e
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 13:53:33 2019 -0600

    rt_hera_test.conf: temporary regression test config for testing on hera

commit c52d27b0d8e99029d1e723ecde07d3ba0813da09
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 13:52:20 2019 -0600

    tests/rt.sh: enable regression testing with rt.sh, changes from Ratko, update STMP and PTMP for GMTB

commit 6b9508c93f81383418ad1b779ce8d4bc2358aba4
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 13:48:01 2019 -0600

    modulefiles/hera.intel/fv3: update path to modules following transition from Juno test system to hera

commit eb229d3cb145a7811d69348cb2167fbd5a5a097d
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 13:47:33 2019 -0600

    ccpp/build_ccpp.sh and conf/configure.fv3.hera.intel: don't use the AVX512 flags yet on hera

commit 6aba455146a4a8d4629704e5226570116091691f
Merge: 5c289838 75b5715e
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 07:17:17 2019 -0600

    Merge pull request #229 from climbfuji/gmtb_develop_update_submodule_20190827

    gmtb/develop: update submodule pointers for FV3, ccpp-physics, ccpp-framework

commit 75b5715e41c6f978defaa04e38d41b8d20326488
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 07:15:40 2019 -0600

    Update submodule pointer for FV3, ccpp-physics, ccpp-framework

commit 5c289838c1bc9d443319e4cdad4b23df5215fc77
Merge: eb7b7ae8 48000a93
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 27 07:13:20 2019 -0600

    Merge pull request #218 from bluefinweiwei/cires_ugwp

    UGWP Version 0

commit 51299cadc6514199225605df04246e54446d6486
Author: Qingfu Liu <[email protected]>
Date:   Tue Aug 27 11:03:43 2019 +0000

    add MYJ surface layer scheme and MYJ PBL scheme to CCPP

commit 75596f60b0d684413cf8a6f42567cd92195b3661
Author: Grant Firl <[email protected]>
Date:   Mon Aug 26 13:34:15 2019 -0600

    remove noahmp_pre.F90 from CCPP config since code was moved to existing interstitial scheme

commit d913c69b7e11b23f5666c4f8432a6e0c80fe7036
Author: Grant Firl <[email protected]>
Date:   Fri Aug 23 18:04:07 2019 -0600

    remove module_wrf_utl.f90 from ccpp_prebuild_config scheme dependency list

commit 48000a93dfd9b07159d3d006016c854e14a20886
Merge: 266c9885 e38eda36
Author: Weiwei <[email protected]>
Date:   Fri Aug 23 13:53:36 2019 -0600

    Merge pull request #3 from climbfuji/ugwd_dom

    Delete tests/rt_with_ugwp.conf

commit e38eda36b8d1d7181400059c3d7cc1af3511534d
Merge: 789ab6bc 266c9885
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 13:50:02 2019 -0600

    Merge branch 'cires_ugwp' of https://github.com/bluefinweiwei/NEMSfv3gfs into ugwd_dom

commit 789ab6bc2ae4e04cdeaa580abbb0cbcf0c4d9cb7
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 13:48:59 2019 -0600

    Delete tests/rt_with_ugwp.conf

commit 266c9885f97153154fa6caaaf0bbac87addda38b
Author: Weiwei <[email protected]>
Date:   Fri Aug 23 13:47:39 2019 -0600

    Delete rt_ugwp_only.conf

    Removed.

commit b27a08aa3d2544024a0fb6adf0a38d339ac3a18c
Merge: 5ffd3ed8 adc9df36
Author: Weiwei <[email protected]>
Date:   Fri Aug 23 13:22:27 2019 -0600

    Merge pull request #2 from climbfuji/ugwd_dom

    UGWD update for open PR to gmtb/develop

commit adc9df36fbe5a866bcab77f709d368286d2a496d
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 11:59:13 2019 -0600

    Update submodule pointers

commit 4410e285d4f0a99a68f2da799fa8d9d117e8ef1a
Merge: 1499c32c eb7b7ae8
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 09:34:58 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into ugwd_dom

commit 1499c32c862f4471a72c85204208d01c847f8d2d
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 09:11:39 2019 -0600

    Update submodule pointers for FV3, ccpp/framework, ccpp/physics

commit 7ae19849e6a6365adab0642e674a3e16b04cbbf3
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 09:10:02 2019 -0600

    ccpp/suites/*: rename gwdps_pre to GFS_GWD_generic_pre, remove duplicate UGWP test, rename CCPP UGWP test to match existing IPD test, update regression test configuration files

commit eb7b7ae83ec4cc828f640810512ab528f6f7a7c8
Merge: 91e485ca cb382b97
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 07:52:49 2019 -0600

    Merge pull request #226 from climbfuji/update_submodule_pointers_gmtb_develop_20190823

    gmtb/develop: update submodule pointers for FV3 and ccpp/framework 2019/08/23

commit cb382b97d933d35a3b40ab7dfa6428079ce810fa
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 07:50:39 2019 -0600

    Update submodule pointers for FV3 and ccpp/framework

commit 91e485cac197bb902c095770526dfc503f09f028
Merge: 00168544 4741dd2f
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 23 07:49:50 2019 -0600

    Merge pull request #225 from climbfuji/github_gmtb_develop_wcoss_cray_gaea_jet_cheyenne_20190819

    gmtb/develop: bugfixes and updates for wcoss/cray/gaea/jet/cheyenne

commit 4741dd2f282be63e8e3ceefc0c1e8ad3deb487ab
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 22 16:25:46 2019 -0600

    modulefiles/theia.intel/fv3: workaround to fix EMC's broken yaml-cpp module

commit 0dd206c8fc9afde82ee11d145e6021e5e36a6d10
Author: Grant Firl <[email protected]>
Date:   Thu Aug 22 13:40:10 2019 -0600

    add noahmp_pre.F90 to ccpp_prebuild_config.py

commit 816818024cc3b512794a1a5507628157de8ce23d
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 22 12:25:37 2019 -0600

    doc/README_CENTOS.txt, modulefiles/linux.gnu/fv3: final touches on documentation, update of modulefiles to match the defaults in READ_{CENTOS,UBUNTU}.txt (strictly speaking not necessary)

commit 0ab1908a4add63af6250cb33a68505a618a24202
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 23:20:31 2019 -0600

    doc/README_UBUNTU.txt: add missing environment variables for buidling CCPP version on UBUNTU

commit 6624c650b92a10bbbe282bf8f3f10618c4d4630c
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 22:09:22 2019 -0600

    doc/README_{UBUNTU,CENTOS,MACOSX_*}.txt: add note that 'make check' for ESMF is optional and that it can take a very long time

commit 3893de3c5e7e7c561017cf0a6428c41ac07f7704
Author: Grant Firl <[email protected]>
Date:   Wed Aug 21 11:39:39 2019 -0600

    update ccpp_prebuild_config.py for NoahMP

commit 7415d501a0d9ba1a1ef4235f15141cf254ca4eb5
Merge: 00168544 5ffd3ed8
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 14:24:29 2019 -0600

    Merge branch 'cires_ugwp' of https://github.com/bluefinweiwei/NEMSfv3gfs into HEAD

commit 6151127e825b9c195a2e3088989910359736355f
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 12:29:42 2019 -0600

    doc/README_CENTOS.txt: instructions for configuring CentOS linux systems, similar to the existing Ubuntu Linux instructions

commit 0d4dd7f1140793f21e9bb7989cf4ada7fb4f0245
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 11:27:38 2019 -0600

    doc/README_UBUNTU.txt: update documentation to latest state, simplify installation of netCDF

commit 1d9d132652c04a8c1c7ad8f4393cb7fb7d31f4a1
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 11:25:51 2019 -0600

    tests/rt_ccpp_gmtb.conf: remove PGI compiler, this allows to remove multiple entires for runs that only work with Intel and GNU; remove wcoss entries (no dynamic builds), replace gaea (no dynamic build) with jet

commit f9ebd24090c38d5037d315f42b5b2f7029c0437b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 10:03:28 2019 -0600

    tests/rt_ccpp_gsd.conf: enable running GSD regression tests on other platforms than theia (regression test baseline now contains GSD input data)

commit b2a7580ced26fd21dd9b98688911747e89cfe10b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 10:00:35 2019 -0600

    tests/rt_ccpp_caps.conf: remove PGI

commit d1e2b5c8f23cb5c1c78186270b39c54540fcf8c6
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 09:58:44 2019 -0600

    conf/before_components.mk, modulefiles/theia.gnu/fv3: replace user-based libraries with modules located in GMTB project directory, enable theia.gnu for testing

commit ffc518e0f4f139fcab0b4138f5e4b78542c25f06
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 21 09:56:32 2019 -0600

    Update ESMF on Cheyenne, Gaea, Jet; for Jet, also remove the module load anaconda (no longer needed and causes ccpp_prebuild.py to fail)

commit e64d8a75dd76d5bed8c1eb47b2ae74b18ee6006f
Merge: 00168544 73d2015f
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 19 09:54:08 2019 -0600

    Merge branch 'gaea_jet_cheyenne_support_and_initial_gnu_tests' of gerrit:NEMSfv3gfs into HEAD

commit e06da970ac5fb5f177fe6e3baba9ff70e3f44ebd
Merge: 18cd1a1a 175971b7
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 19 08:53:49 2019 -0600

    Merge pull request #224 from climbfuji/gsd_develop_update_submodule_pointers_20190819

    gsd/develop update submodule pointers 2019/08/19

commit 175971b7d34d49c371f659adeba870b91628cbc0
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 19 08:51:05 2019 -0600

    Update submodule pointer for FV3

commit 18cd1a1aadddb816b0f8903fcb059556768b001b
Merge: 9fbef48c f663d381
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 19 08:48:34 2019 -0600

    Merge pull request #221 from climbfuji/update_gsd_develop_with_vlab_master_20190816

    Update GitHub gsd/develop with Vlab master 2019/08/16

commit 001685445cb219fd9c4565c0bc3885800c68f813
Merge: 50eca7bb df214421
Author: Dom Heinzeller <[email protected]>
Date:   Sat Aug 17 16:32:16 2019 -0600

    Merge pull request #223 from climbfuji/gmtb_develop_update_submodule_pointers_20190817

    gmtb/develop: update submodule pointers 2019/08/17

commit df214421c29449cb1f800ed33ffe3b7a9a87663c
Author: Dom Heinzeller <[email protected]>
Date:   Sat Aug 17 16:30:49 2019 -0600

    Update submodule pointers for FV3 NEMS ccpp/framework ccpp/physics

commit 50eca7bbf0cb47d05591286257acd6c5fa4c2edc
Merge: de32c317 1686f099
Author: Dom Heinzeller <[email protected]>
Date:   Sat Aug 17 16:28:47 2019 -0600

    Merge pull request #212 from climbfuji/make_linux_and_macos_modulefiles_flexible

    Generalize and update Linux modulefile, add support for hera

commit f663d38105a20ddc0c60467493972c47f0aa35e9
Merge: 2a1c6868 9fbef48c
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 13:47:46 2019 -0600

    Merge branch 'gsd/develop' of https://github.com/NCAR/NEMSfv3gfs into update_gsd_develop_with_vlab_master_20190816

commit 9fbef48c1b10bc348acc0ca073248e04be7da5b5
Merge: f86243fc a995462a
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 13:47:28 2019 -0600

    Merge pull request #217 from climbfuji/update_submodule_pointer_NEMS_20190816

    gsd/develop: update submodule pointer for new NEMS repo

commit 2a1c6868319d02394b1012be4fe4bd05bc77d1cd
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:59:04 2019 +0000

    Fix hash to NEMS

commit 9dfe49f9e0d244186055e272d1298f1e3b18c799
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:29:12 2019 +0000

    NEMS transitioned from Vlab to GitHub.

    NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc)

    Clone NEMS from new repository:
    git clone https://github.com/NOAA-EMC/NEMS

commit ef403be0795a476ead513ff57ffb5c1f9e75aa7a
Author: Ratko Vasic <[email protected]>
Date:   Mon Aug 5 18:34:48 2019 +0000

    This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko):

    Summary of updates in NEMS commit:
    -- removes 'module load slurm' commands
    -- Gerhard's mediator updates to run large number of ATM/MED pets and have
       ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089
    -- Increase path size of directory for building WW3 error capturing in
       NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507
    -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085
    -- Raffaele's change on debug mode of compiling fv3_gsdchem

    Applications:

    EMC_FV3-MOM6-CICE5
    -- Updated module to point to ESMFv8.0.0bs40
    EMC_FV3-GSDCHEM-WW3
    -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here).
    EMC_FV3GFS-GSDCHEM
    -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point
       to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray
    NEMSfv3gfs
    -- Updated module to point to ESMFv8.0.0bs40

commit 9d7ddc8695a0742b4865582dabc38824b0b321b6
Author: Dusan Jovic <[email protected]>
Date:   Fri Jul 26 13:51:22 2019 +0000

    Fix an issue introduced in the previous commit where merge conflict markers were inadvertently committed.

    Change-Id: Ib699fae7acda1bbb2cf6475461b41d09a6fba578

commit b53a1117e79822ae158ba8e7f41f10b206c1bf68
Author: Jun.Wang <[email protected]>
Date:   Sat Jul 20 14:17:26 2019 +0000

    NEMSfv3gfs: This commits #refs 65267 adding obs-based roughness length formulations and adjustment of K for hurricane simulations

    Change-Id: Ia71047b284c7ae09b390a2e375b8cba94fdfc46c

commit 1686f099f08ac2a7f0909c292619fededec1aabf
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 12:25:22 2019 -0600

    Update submodule pointer for ccpp/framework

commit 4418499222f2ba30e6965160c4e59493baa202d4
Merge: 0cd98189 4524ac0b
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 12:03:42 2019 -0600

    Merge branch 'update_gmtb_develop_from_vlab_master_20190816' of https://github.com/climbfuji/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible

commit 4524ac0b7a4982d28e50c6cebb1b514ce6ac7b7e
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:59:04 2019 +0000

    Fix hash to NEMS

commit 8b114af25680fe70f8d302cac8c087e87c472b14
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:29:12 2019 +0000

    NEMS transitioned from Vlab to GitHub.

    NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc)

    Clone NEMS from new repository:
    git clone https://github.com/NOAA-EMC/NEMS

commit f61d93cb6fb5bf5bacf6c0d6c38429bb71af4f71
Author: Ratko Vasic <[email protected]>
Date:   Mon Aug 5 18:34:48 2019 +0000

    This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko):

    Summary of updates in NEMS commit:
    -- removes 'module load slurm' commands
    -- Gerhard's mediator updates to run large number of ATM/MED pets and have
       ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089
    -- Increase path size of directory for building WW3 error capturing in
       NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507
    -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085
    -- Raffaele's change on debug mode of compiling fv3_gsdchem

    Applications:

    EMC_FV3-MOM6-CICE5
    -- Updated module to point to ESMFv8.0.0bs40
    EMC_FV3-GSDCHEM-WW3
    -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here).
    EMC_FV3GFS-GSDCHEM
    -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point
       to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray
    NEMSfv3gfs
    -- Updated module to point to ESMFv8.0.0bs40

commit 8a1e235d57a13d40e8ba71d3ce174d62dfa4f265
Merge: 62eaf40f 8ad5805c
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 11:41:45 2019 -0600

    Merge pull request #220 from climbfuji/update_submodule_pointer_fv3

    Update submodule pointer for FV3

commit 8ad5805ce1c219f8ba2962d6e84403dd11dfeac2
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 11:40:27 2019 -0600

    Update submodule pointer for FV3

commit 62eaf40f77eae7a450913e9aba54b967da37b9b3
Merge: a8e8fa58 f6eae698
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 11:36:46 2019 -0600

    Merge pull request #219 from climbfuji/update_github_master_from_vlab_master_20190816

    Update GitHub master from Vlab master 2019/08/16

commit f6eae698bf40e3adca1b8d95417cb2c8905df7f4
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:59:04 2019 +0000

    Fix hash to NEMS

commit dcc7a818cc8a19c0ec894015c4bd0d8003768fc0
Author: Ratko Vasic <[email protected]>
Date:   Thu Aug 8 16:29:12 2019 +0000

    NEMS transitioned from Vlab to GitHub.

    NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc)

    Clone NEMS from new repository:
    git clone https://github.com/NOAA-EMC/NEMS

commit a9cb714dd858e2d46571cd89776275847e2ced7a
Author: Ratko Vasic <[email protected]>
Date:   Mon Aug 5 18:34:48 2019 +0000

    This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko):

    Summary of updates in NEMS commit:
    -- removes 'module load slurm' commands
    -- Gerhard's mediator updates to run large number of ATM/MED pets and have
       ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089
    -- Increase path size of directory for building WW3 error capturing in
       NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507
    -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085
    -- Raffaele's change on debug mode of compiling fv3_gsdchem

    Applications:

    EMC_FV3-MOM6-CICE5
    -- Updated module to point to ESMFv8.0.0bs40
    EMC_FV3-GSDCHEM-WW3
    -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here).
    EMC_FV3GFS-GSDCHEM
    -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point
       to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray
    NEMSfv3gfs
    -- Updated module to point to ESMFv8.0.0bs40

commit f595bcfeb55c8503c3b3f290cb22169fe75b6065
Author: Dusan Jovic <[email protected]>
Date:   Fri Jul 26 13:51:22 2019 +0000

    Fix an issue introduced in the previous commit where merge conflict markers were inadvertently committed.

    Change-Id: Ib699fae7acda1bbb2cf6475461b41d09a6fba578

commit ae772b0a3fc5b75e3814f2328ac35139d4f4ed99
Author: Jun.Wang <[email protected]>
Date:   Sat Jul 20 14:17:26 2019 +0000

    NEMSfv3gfs: This commits #refs 65267 adding obs-based roughness length formulations and adjustment of K for hurricane simulations

    Change-Id: Ia71047b284c7ae09b390a2e375b8cba94fdfc46c

commit 5ffd3ed8b437297040036dc835f86142da8e8879
Author: Weiwei <[email protected]>
Date:   Wed Jul 3 12:23:33 2019 -0600

    	new file:   ccpp/config/ccpp_prebuild_config.py
            new file:   ccpp/suites/suite_FV3_GFS_2017_gfdlmp_ugwp.xml
    	new file:   parm/ccpp_ugwp.nml.IN
            new file:   tests/rt_ugwp_only.conf
    	new file:   tests/rt_ugwp.sh
            new file:   tests/tests/fv3_gfdlmprad_ugwp
    	new file:   tests/tests/fv3_ccpp_gfdlmprad_ugwp
            new file:   tests/rt_ccpp_gmtb_with_ugwp.conf
            new file:   tests/rt_with_ugwp.conf

commit a995462aeaa86ce2640c75b77847ff2b9709ce5e
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 10:08:44 2019 -0600

    Update submodule pointer for NEMS following transition of EMC NEMS repo Vlab -> GitHub

commit 0cd98189b738c9d1fafef7d8c8011582fb6b677b
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 09:55:10 2019 -0600

    Update submodule pointer for NEMS following the move from Vlab to GitHub

commit ac49f23be40492ab8908161e5c48cd7f10f6c499
Merge: a2c18766 de32c317
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 16 09:22:54 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible

commit de32c31777ff15f0f850bcdc6b7f18e049993794
Merge: ddcf419d d1932bc5
Author: Laurie Carson <[email protected]>
Date:   Fri Aug 16 09:20:59 2019 -0600

    Merge pull request #216 from llpcarson/update_nems

    Update submodule pointers for new NEMS repo

commit d1932bc52876a361c3234b00bb0a18aa6039babd
Author: Laurie Carson <[email protected]>
Date:   Fri Aug 16 09:15:13 2019 -0600

    Update submodule pointers for new NEMS repo

commit a8e8fa58e812f2d0fe88e05c8d278af55ff5a4bf
Author: Laurie Carson <[email protected]>
Date:   Fri Aug 16 09:11:32 2019 -0600

    Update submodule pointers for new NEMS repo, latest ccpp-physics (some SCM updates only)

commit a2c1876603ea7b6e959d85d27566f7350a8398a2
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 15 17:20:11 2019 -0600

    Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics

commit 30a41c84d22b9f8bf03d086017c2e5d420531c59
Merge: 42be0321 ddcf419d
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 15 17:17:29 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible

commit 42be032139a3e79533fd78f22fedac23efacd056
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 14 16:49:50 2019 -0600

    Add support for hera with juno (hera test system) modifications

commit ddcf419d388d2d181aa0a9a5a2f6a9e19d41539e
Merge: 1b5d9cc1 9884db3d
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 15 12:01:13 2019 -0600

    Merge pull request #213 from climbfuji/update_macosx_20190811

    Update MacOSX build configuration 2019/08/11

commit 9884db3d03067c73ec6f66e23769d8af25fef7a4
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 14 08:33:39 2019 -0600

    Update submodule pointer for FV3

commit 450819fcfcbdb624b33aa4e41fb3efcdccefd727
Author: Dom Heinzeller <[email protected]>
Date:   Wed Aug 14 08:33:28 2019 -0600

    doc/README_MACOSX_clanggfortran.txt, doc/README_MACOSX_gccgfortran.txt: final touches to install/setup documentation

commit e46d3256356a971cbcaa3ce520327115a485a1ad
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 13 14:48:14 2019 -0600

    doc/README_MACOSX_*.txt: add missing command for ESMF

commit 730bdfe2286a51857b32da2a999a6f8ab51e5653
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 13 10:27:56 2019 -0600

    Update submodule pointer for FV3

commit 99ef65ba88b8964bd6c757dab910710e0f0f7107
Author: Dom Heinzeller <[email protected]>
Date:   Tue Aug 13 10:27:41 2019 -0600

    doc/README_MACOSX_clanggfortran.txt: remove TODO reminders

commit e2c20771b790076a9c932b45ba0d30204914e059
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 21:03:30 2019 -0600

    modulefiles/macosx.gnu/fv3: update library versions, adjust to work with both clang+gfortran and gcc+gfortran

commit 1b3302e8cdc59aa302240a0b03ecb34141202ac5
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 21:02:43 2019 -0600

    doc/README_MACOSX_*: work in progress, saving progress

commit 35d02b6f2842d5951122777ddb6630f4ea68959d
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 21:01:46 2019 -0600

    Update submodule pointer for FV3

commit f86243fce831151f943d64b7bba62391a03f89af
Merge: c7dc843e a0596c86
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 20:30:08 2019 -0600

    Merge pull request #215 from climbfuji/update_submodule_pointer_20190812

    Update submodule pointer for ccpp/physics

commit a0596c864d8936f39a05ff314eb593211aae0b65
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 20:28:33 2019 -0600

    Update submodule pointer for ccpp/physics

commit c7dc843eb975f33368037556d0ecf6a55649584f
Merge: 1ebaea29 3d01b44f
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 20:26:50 2019 -0600

    Merge pull request #214 from climbfuji/bugfix_ruclsm_ice_temp_landmask_landuse_inconsistencies

    Bugfix RUC LSM ice temperature initialization, appbuild bugfix

commit ceef93aa0a0f5815bbca4a5fbf281bb4d9adefbe
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 09:23:58 2019 -0600

    Work in progress: provide instructions for both clang+gfortran and gcc+gfortran on MacOSX

commit 3d01b44f5b316ca5bfeb0dfa8e570074921bdfec
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 08:18:45 2019 -0600

    Update submodule pointer for ccpp/physics

commit d4773492a63cfe26bcb84c6d50c78e86855f4b05
Author: Dom Heinzeller <[email protected]>
Date:   Mon Aug 12 08:17:43 2019 -0600

    tests/tests/fv3_ccpp_appbuild: bugfix, add back description/control dir that were unintentially removed in a previous commit

commit ae4795908cfba0955c7aed812f717cf54562cb62
Author: dom <[email protected]>
Date:   Sun Aug 11 16:07:59 2019 -0600

    conf/configure.fv3.macosx.gnu, modulefiles/macosx.gnu/fv3: add flexibility by using user-defined compiler commands and library locations (through environment variables)

commit 619382c41818dfee04a5ab1f5c3cafde7fab821b
Author: Dom Heinzeller <[email protected]>
Date:   Fri Aug 9 10:35:07 2019 -0600

    modulefiles/linux.gnu/fv3: allow user to specify own locations for compilers and libraries

commit 1b5d9cc192f1032d899468379569be64a7b13bd1
Merge: e8a4da85 03553110
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 1 16:27:31 2019 -0600

    Merge pull request #211 from climbfuji/github_gmtb_develop_update_submodule_pointers_20190801

    GitHub gmtb/develop update submodule pointers 2019/08/01

commit 0355311007afd0231f93bf5039e72d6df4125292
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 1 16:25:10 2019 -0600

    Update submodule pointers for FV3, ccpp/framework, ccpp/physics

commit e8a4da8588c7495408a931cce323ca3c6f5cd190
Merge: b06eeb95 ab06c106
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 1 14:46:17 2019 -0600

    Merge pull request #210 from climbfuji/new_metadata_format_step1_20190725

    Migrate to new metadata format step 1

commit bd4cb27b7cc39d246f1aa5c055beb2506427f601
Merge: 1ebaea29 b06eeb95
Author: Dom Heinzeller <[email protected]>
Date:   Thu Aug 1 08:22:28 2019 -0600

    Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into HEAD

commit ab06c106e05811faf6e7ae7107769657c3e8b9e0
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 31 16:26:46 2019 -0600

    Update submodule pointers for ccpp/framework and ccpp/physics

commit 74d98ff31771e50553e2eb31e6b8cafcfc305008
Merge: b77f1871 13619a43
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 31 15:49:32 2019 -0600

    Merge branch 'master' of gerrit:NEMSfv3gfs into HEAD

commit b77f187103fbbcf25c0871a328f094f609761193
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 31 13:39:37 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add new type definition files and TYPEDEFS_NEW_METADATA configuration entry

commit 73d2015f97e3730a334c532eef46f4ae2a3e4193
Author: Dom Heinzeller <[email protected]>
Date:   Mon Jul 22 20:49:37 2019 -0400

    tests/rt.sh, tests/fv3_conf/fv3_qsub.IN_jet -> tests/fv3_conf/fv3_slurm.IN_jet: change scheduler on jet from Moab/Torque to Slurm

commit 2312a74d685f0c348b71c41af86eefc6606fd196
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 15:14:44 2019 -0600

    conf/before_components.mk: enable jet.intel

commit e6cda943e2adc3b54005a64805c667a9185f02c4
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 14:51:30 2019 -0600

    Update submodule pointer for FV3

commit 0642cc07aa0808fc86a538e9b2ae8f8295e569ae
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 14:51:04 2019 -0600

    tests/rt.conf: add jet.intel similar to gaea.intel

commit 8607bea695293c71f879e70d910853b81b492ea5
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 14:49:21 2019 -0600

    Update modulefiles/jet.intel/fv3 to use modules created by GMTB

commit 1ebaea2974ba4f06f4c1c114faa03fde94c3e293
Merge: 2605f0b7 72c10102
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 11:47:22 2019 -0600

    Merge pull request #209 from climbfuji/update_submodule_pointer_20190719

    Update submodule pointer for ccpp/physics

commit 72c10102ce07ac8c465f571bea6a6cd5aa5fe088
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 11:45:57 2019 -0600

    Update submodule pointer for ccpp/physics

commit 2605f0b773ab7a862f9152a0c214f8da372e3d1e
Merge: cad0f201 820e0cc2
Author: Dom Heinzeller <[email protected]>
Date:   Fri Jul 19 11:45:20 2019 -0600

    Merge pull request #208 from climbfuji/gsd_develop_ruc_bugfixes_sar_update_surface_flux_bugfix_inactive_20190718

    Gsd develop ruc bugfixes sar update surface flux bugfix inactive 20190718

commit 820e0cc2a94c9599b4a48e0f7c54900792e8cfbe
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 21:28:28 2019 -0600

    Update submodule pointer for ccpp/physics

commit d954359f8d36cda0306e9f51a8f5f3797945cd2f
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 21:28:08 2019 -0600

    ccpp/suites/suite_FV3_GSD_v0.xml: add calls to temporary interstitial schemes for RUC-sfc_sice interaction

commit c3993781d192fa061dc9484342b923e149597b0f
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 21:27:13 2019 -0600

    ccpp/config/ccpp_prebuild_config.py: add temporary interstitial schemes in lsm_ruc_sfc_sice_interstitial.F90

commit a8d3ec08a9ed65de0bf45d7bdd4974b7a9ae6c83
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 15:27:48 2019 -0600

    conf/configure.fv3.wcoss_cray, ccpp/build_ccpp.sh: set correct REPRO compiler flags for Intel 16, pass legacy-Intel flag to cmake

commit e0b77299c83e21bd38a1cf0a9cb4617e461c4af9
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:13:16 2019 -0600

    tests/rt_gnu.conf: initial set of GNU-based regression tests, Cheyenne only

commit 35c2ef3f34ca3ca4086d3e71b4c610b56e2659b8
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:12:47 2019 -0600

    tests/rt_utils.sh: update of regular expression for Cheyenne only

commit 4aa66b51bde51c9ec2bb3ca0b240a8bfd71bf2af
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:12:03 2019 -0600

    tests/rt.sh: temorary, change location of regression test baseline to ESRL-GSD-GMTB project directory

commit ed13c0038d6bd15da146321b8ca04ab632a07abc
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:10:58 2019 -0600

    modulefiles/gaea.intel/fv3, modulefiles/gaea.intel/fv3.intel-16.0.3.210: update of modulefiles on gaea for both Intel 16 and 18 for CCPP

commit b99c6e2a1058fea4ea7c083bcf7ba54cd9fc62b6
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:09:38 2019 -0600

    Update of Intel and GNU modulefiles for Cheyenne following the major OS upgrades beginning of July 2019

commit b74241682499f54e474d087fdc6797932534f459
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:08:31 2019 -0600

    conf/configure.fv3.gaea.intel: add option to use Intle 16, adjust repro flags if Intel 16 is used

commit 89024d4dd5034aedec7ed197e84388e888c01a7f
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:03:32 2019 -0600

    conf/before_components.mk: enable gaea.intel, add switch to use Intel 16 compiler on this machine (default is Intel 18)

commit 9909cd1c5711baf1a59595f3e4047aaa8b960606
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 11:01:42 2019 -0600

    ccpp/CMakeLists.txt, ccpp/build_ccpp.sh: add option INTEL16=Y to build_ccpp.sh, which triggers a cmake flag LEGACY_INTEL to use a different fp-model option in REPRO mode

commit cad0f201bf3de40b3e6b4f24a491ff18d654ac5b
Author: Dom Heinzeller <[email protected]>
Date:   Thu Jul 18 10:46:02 2019 -0600

    Update CODEOWNERS to enable branch protection

commit 89a0f8eaf60b393739658b9605de3194d8159a9d
Merge: 259b675c c7c692c0
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 20:50:49 2019 -0600

    Merge pull request #207 from climbfuji/gsd_develop_update_submodule_pointers_20190717

    gsd/develop: update submodule pointers for FV3 and ccpp/physics

commit c7c692c02b8a680c6e8f7c03f0a46eee1afdbd4b
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 20:49:18 2019 -0600

    Update submodule pointers for FV3 and ccpp/physics

commit 259b675cfd32286d7995b7c5a2483344f0e81213
Merge: cb0d5e30 75906385
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 20:48:13 2019 -0600

    Merge pull request #206 from climbfuji/add_regression_tests_20190717

    gsd/develop: add regression tests for Thompson only, GF only, MYNN only & cleanup

commit 759063853f2cae2173afe9234c7d04424baaafb7
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 14:47:10 2019 -0600

    tests/fv3_conf/ccpp_gsd_run.IN: add logic to use correct field table, depending on choice of microphysics schemes and whether a TKE PBL scheme is used

commit 835265e06943d297959cc45645d0d5c516e675e2
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 14:31:47 2019 -0600

    Update submodule pointers for FV3 and ccpp/physics

commit bb7f8838d76dba2f3b8ef85a3015f3fa51b8dd2f
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 14:31:32 2019 -0600

    parm/ccpp_gsd.nml.IN, tests/fv3_conf/ccpp_gsd_run.IN, tests/rt_ccpp_gsd.conf: use additional namelist variables for more flexibility

commit d454c1cff7d9cf740f2129620f09eddb8fe0cd30
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 14:29:19 2019 -0600

    tests/tests/fv3_ccpp_*: add new tests for individual schemes of the GSD suite, remove increase of wallclock time on Cheyenne

commit b93828f3c8f338f9bc5a56f0c67a9b88765efa74
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 14:28:07 2019 -0600

    tests/default_vars.sh: add additional default variables for microphysics

commit b06eeb95aeba76e3ad3e6210cb8b4ff81707086b
Merge: f4790463 4e253679
Author: Dom Heinzeller <[email protected]>
Date:   Wed Jul 17 09:42:39 2019 -0600

    Merge pull request #205 from climbfuji/gitmodules_add_default_branches_20190716

    gmtb/develop: add default branches for submodules to .gitmodules

commit 4e25367977bbfb401e604e867cafd9e3b09892f0
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 16 15:15:37 2019 -0600

    .gitmodules: set default branches for submodules

commit cb0d5e30c0a244e1bc14b57b9dbc331b7781319d
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 16 15:04:21 2019 -0600

    Update submodule pointers for all submodules

commit 22fd642f89cd516f177e160ecb486d6ed179a56c
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 16 15:04:06 2019 -0600

    .gitmodules: set default branches of submodules to gsd/develop

commit f1b1245a9f566a13b1d2dabca46a12729fd1c418
Merge: f9330c32 f4790463
Author: Dom Heinzeller <[email protected]>
Date:   Tue Jul 16 15:03:24 2019 -0600

    Update CODEOWNERS to GSD t…
zhanglikate pushed a commit to zhanglikate/global-workflow that referenced this issue Oct 6, 2022
@DomHeinzeller
Merge pull request NOAA-EMC#3 from climbfuji/thompson_init_update
0d79a64 
Update submodule pointer for FV3 (CCPP/Thompson initialization update)
@arunchawla-NOAA
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what is the status of this? It looks like we have both capabilities. Can we close this issue? If we have to remove manage externals at some point we can create a new issue then

@KateFriedman-NOAA
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We're using sorc/checkout.sh still but maintaining Externals.cfg for now. Possibly will remove Externals.cfg in the near future after we make a final decision. Will open an issue to remove it if so, as you suggest.

Closing this issue since manage_externals is supported now.

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DavidNew-NOAA added a commit to DavidNew-NOAA/global-workflow that referenced this issue Oct 7, 2024
@DavidNew-NOAA
pynorms NOAA-EMC#3
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@weihuang-jedi weihuang-jedi mentioned this issue Jan 24, 2025
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DavidNew-NOAA added a commit to DavidNew-NOAA/global-workflow that referenced this issue Feb 12, 2025
@DavidNew-NOAA
pynorms round NOAA-EMC#3
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