Code

parallel netcdf IO#41

Code

Merged

junwang-noaa merged 33 commits intoNOAA-EMC:developNOAA-EMC/fv3atm:developfrom junwang-noaa:netcdf_paralleljunwang-noaa/fv3atm:netcdf_parallelCopy head branch name to clipboardFeb 4, 2020

+805-72

Commits

Commits on Jan 8, 2020

• netcdf parallel writing and lon/lat in netcdf file

  junwang-noaa

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  45d0ce2

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• some changes to get it to (almost) run on hera

  jswhit2

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Commits on Jan 9, 2020

• lat should be in degrees - remove conversion to radians.

  jswhit2

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• import updates from jswhit/fv3atm

  jswhit2

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  b3e52a0

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• more bug fixes - now works on hera

  jswhit2

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  a201d6c

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• specify collective access if compression turned on.

  jswhit2

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• use classic model

  jswhit2

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Commits on Jan 10, 2020

• bug fixes for parallel IO with compression

  jswhit2

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  49ffb5e

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• fix calculation of max compression error

  jswhit2

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  134ebc0

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• turn off shuffle filter

  jswhit2

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• code simplification

  jswhit2

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Commits on Jan 17, 2020

• remove debug print

  jswhit2

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Commits on Jan 22, 2020

• don't use parallel IO for 2d file (since it seems to increase run time)

  jswhit2

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Commits on Jan 23, 2020

• allow multiple values of output_file, as long as they all start with 'netcdf'

  jswhit2

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Commits on Jan 24, 2020

• use default chunksize for 2d vars

  jswhit2

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• delete commented out macro ESMF_ERR_ABORT

  jswhit2

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• delete rad2dg

  jswhit2

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Commits on Jan 25, 2020

• add module_write_netcdf_parallel.F90

  jswhit2

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• add option to build without parallel netcdf (-DNO_PARALLEL_NETCDF)

  jswhit2

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  2e63f49

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• fix typo

  jswhit2

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Commits on Jan 26, 2020

• stub file for building without parallel netcdf lib

  jswhit2

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• Merge remote-tracking branch 'upstream/develop' into netcdf_parallel

  jswhit2

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• allow chunksizes for 2d arrays to be set in model_configure (ichunk2d,jchunk2d)

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  jswhit2

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Commits on Jan 27, 2020

• add ichunk3d,jchunk3d,kchunk3d to specify 3d chunksizes.

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  jswhit2

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  a6c36fb

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• fix typo

  jswhit2

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  1cf5a6c

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• put ifdefs in module_write_netcdf_parallel.F90 so no stub file needed

  jswhit2

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• don't need this file anymore

  jswhit2

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• remove module_write_netcdf_parallel_stub.o target

  jswhit2

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• use specified chunksizes for serial IO. If chunksize parameter negative, let netcdf library choose defaults.

  jswhit2

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• update comments

  jswhit2

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Commits on Jan 30, 2020

• get output_file without esmf call error

  junwang-noaa

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  45d35d5

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• syntax fix

  junwang-noaa

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Commits on Feb 1, 2020

• fix stub interface in module_write_netcdf_parallel.F90 for cmake build

  junwang-noaa

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