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make new release (#52)
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StroemPhi authored Jan 10, 2023
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Showing 15 changed files with 1,323 additions and 928 deletions.
4 changes: 2 additions & 2 deletions src/ontology/imports/bfo_import.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vibso/imports/bfo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-09/imports/bfo_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-10/imports/bfo_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-09</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-10</owl:versionInfo>
</owl:Ontology>


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10 changes: 5 additions & 5 deletions src/ontology/imports/chmo_import.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vibso/imports/chmo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-09/imports/chmo_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-09</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-10/imports/chmo_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-10</owl:versionInfo>
<prov:wasDerivedFrom rdf:resource="http://purl.obolibrary.org/obo/chmo/releases/2022-04-19/chmo.owl"/>
</owl:Ontology>

Expand Down Expand Up @@ -1340,7 +1340,7 @@
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHMO_0000680"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Spectroscopy where the Raman scattering of monochromatic light, from an ultraviolet laser, by a sample is detected.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://doi.org/10.1021/ja044708f</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>https://doi.org/10.1021/ja044708f</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -1824,7 +1824,7 @@
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHMO_0001767"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Spectroscopy where the Raman scattering of monochromatic light, usually from a laser, by a sample (e.g. a biological cell) constrained using optical tweezers is detected.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://doi.org/10.1039/b815253e</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>https://doi.org/10.1039/b815253e</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -2481,7 +2481,7 @@
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHMO_0002710"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Spectroscopy where the sample absorbs radiation from the infrared region (0.78–1000 \μm) over two frequency axes. Cross peaks in the spectrum encode the couplings and orientation between vibrations.</owl:annotatedTarget>
<oboInOwl:hasDbXref>FIX:0001069</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FIX:0001069</oboInOwl:hasDbXref>
</owl:Axiom>


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4 changes: 2 additions & 2 deletions src/ontology/imports/iao_import.owl
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Expand Up @@ -9,9 +9,9 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vibso/imports/iao_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-09/imports/iao_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-10/imports/iao_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/iao/2022-11-07/iao.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-09</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-10</owl:versionInfo>
</owl:Ontology>


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30 changes: 15 additions & 15 deletions src/ontology/imports/obi_import.owl
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Expand Up @@ -10,8 +10,8 @@
xmlns:prov="http://www.w3.org/ns/prov#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vibso/imports/obi_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-09/imports/obi_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-09</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-10/imports/obi_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-10</owl:versionInfo>
<prov:wasDerivedFrom rdf:resource="http://purl.obolibrary.org/obo/obi/2022-12-14/obi.owl"/>
</owl:Ontology>

Expand Down Expand Up @@ -1779,12 +1779,12 @@ This issue is outside the scope of OBI.</obo:IAO_0000116>
<obo:IAO_0000117>Person:Helen Parkinson</obo:IAO_0000117>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000116>JZ: Discussed on May 7, 2012 OBI dev call. Bjoern points out that we need to allow for organizations to be members of organizations. And agreed by the other OBI developers. So, human and organization were specified in &apos;Domains&apos;. The textual definition was updated based on it.</obo:IAO_0000116>
<obo:IAO_0000119>Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000232>2009/09/28 Alan Ruttenberg. Fucoidan-use-case</obo:IAO_0000232>
<obo:IAO_0000119>Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000116>2009/10/01 Alan Ruttenberg. Barry prefers generic is-member-of. Question of what the range should be. For now organization. Is organization a population? Would the same relation be used to record members of a population</obo:IAO_0000116>
<rdfs:label>is member of organization</rdfs:label>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000119>Person:Helen Parkinson</obo:IAO_0000119>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001213">
<rdfs:label>eBioscience</rdfs:label>
Expand All @@ -1803,8 +1803,8 @@ This issue is outside the scope of OBI.</obo:IAO_0000116>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001287">
<obo:IAO_0000119>WEB:http://www.exalpha.com/@2011/04/11</obo:IAO_0000119>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000111>Exalpha Biological</obo:IAO_0000111>
<obo:IAO_0000117>Karin Breuer</obo:IAO_0000117>
<obo:IAO_0000111>Exalpha Biological</obo:IAO_0000111>
<rdfs:label>Exalpha Biological</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001312">
Expand All @@ -1818,14 +1818,14 @@ This issue is outside the scope of OBI.</obo:IAO_0000116>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000111>Exbio Antibodies</obo:IAO_0000111>
<rdfs:label>Exbio Antibodies</rdfs:label>
<obo:IAO_0000119>WEB:http://www.exbio.cz/@2011/04/11</obo:IAO_0000119>
<obo:IAO_0000117>Karin Breuer</obo:IAO_0000117>
<obo:IAO_0000119>WEB:http://www.exbio.cz/@2011/04/11</obo:IAO_0000119>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001321">
<obo:IAO_0000119>WEB:http://www.bdbiosciences.com/@2011/04/11</obo:IAO_0000119>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000111>Becton Dickinson (BD Biosciences)</obo:IAO_0000111>
<rdfs:label>Becton Dickinson (BD Biosciences)</rdfs:label>
<obo:IAO_0000111>Becton Dickinson (BD Biosciences)</obo:IAO_0000111>
<obo:IAO_0000117>Karin Breuer</obo:IAO_0000117>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001338">
Expand All @@ -1839,15 +1839,15 @@ This issue is outside the scope of OBI.</obo:IAO_0000116>
<obo:IAO_0000117>Karin Breuer</obo:IAO_0000117>
<obo:IAO_0000111>Millipore</obo:IAO_0000111>
<obo:IAO_0000119>WEB:http://www.guavatechnologies.com/@2011/04/11</obo:IAO_0000119>
<rdfs:label>Millipore</rdfs:label>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<rdfs:label>Millipore</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001347">
<obo:IAO_0000111>Antigenix</obo:IAO_0000111>
<rdfs:label>Antigenix</rdfs:label>
<obo:IAO_0000117>Karin Breuer</obo:IAO_0000117>
<obo:IAO_0000119>WEB:http://www.antigenix.com/@2011/04/11</obo:IAO_0000119>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000119>WEB:http://www.antigenix.com/@2011/04/11</obo:IAO_0000119>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001355">
<obo:IAO_0000117>Karin Breuer</obo:IAO_0000117>
Expand Down Expand Up @@ -1892,8 +1892,8 @@ This issue is outside the scope of OBI.</obo:IAO_0000116>
<obo:IAO_0000119>WEB:http://bentleyinstruments.com/@2011/04/11</obo:IAO_0000119>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001434">
<obo:IAO_0000117>Karin Breuer</obo:IAO_0000117>
<rdfs:label>Invitrogen</rdfs:label>
<obo:IAO_0000117>Karin Breuer</obo:IAO_0000117>
<obo:IAO_0000119>WEB:http://www.invitrogen.com/@2011/04/11</obo:IAO_0000119>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000111>Invitrogen</obo:IAO_0000111>
Expand All @@ -1909,17 +1909,17 @@ This issue is outside the scope of OBI.</obo:IAO_0000116>
<obo:IAO_0000117>Karin Breuer</obo:IAO_0000117>
<obo:IAO_0000111>CytoBuoy</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000119>WEB:http://www.cytobuoy.com/@2011/04/11</obo:IAO_0000119>
<rdfs:label>CytoBuoy</rdfs:label>
<obo:IAO_0000119>WEB:http://www.cytobuoy.com/@2011/04/11</obo:IAO_0000119>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001688">
<dc:source rdf:resource="http://purl.obolibrary.org/obo/obi/2022-12-14/obi.owl"/>
<obo:IAO_0000115>Relating an organization to a legal person or organization.</obo:IAO_0000115>
<obo:IAO_0000117>Person: Jie Zheng</obo:IAO_0000117>
<rdfs:label xml:lang="en">has organization member</rdfs:label>
<obo:IAO_0000111 xml:lang="en">has organization member</obo:IAO_0000111>
<obo:IAO_0000116>See tracker:
https://sourceforge.net/tracker/index.php?func=detail&amp;aid=3512902&amp;group_id=177891&amp;atid=886178</obo:IAO_0000116>
<obo:IAO_0000111 xml:lang="en">has organization member</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001855">
Expand All @@ -1938,8 +1938,8 @@ https://sourceforge.net/tracker/index.php?func=detail&amp;aid=3512902&amp;group_
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0001860">
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
<obo:IAO_0000111>NanoString Technologies</obo:IAO_0000111>
<rdfs:label>NanoString Technologies</rdfs:label>
<obo:IAO_0000111>NanoString Technologies</obo:IAO_0000111>
<obo:IAO_0000115>An organization that supplies life science tools for translational research and molecular diagnostics based on a novel digital molecular barcoding technology. The NanoString platform can provide simple, multiplexed digital profiling of single molecules.</obo:IAO_0000115>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002193">
Expand All @@ -1951,8 +1951,8 @@ https://sourceforge.net/tracker/index.php?func=detail&amp;aid=3512902&amp;group_
<obo:IAO_0000115>An organization that is an American multinational, biotechnology product development company, created in 2006 by the merger of Thermo Electron and Fisher Scientific.</obo:IAO_0000115>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0002755">
<obo:IAO_0000115>An organization that is developing and selling nanopore sequencing products and is based in the UK.</obo:IAO_0000115>
<rdfs:label>Oxford Nanopore Technologies</rdfs:label>
<obo:IAO_0000115>An organization that is developing and selling nanopore sequencing products and is based in the UK.</obo:IAO_0000115>
<obo:IAO_0000117>James A. Overton</obo:IAO_0000117>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000119>https://en.wikipedia.org/wiki/Oxford_Nanopore_Technologies</obo:IAO_0000119>
Expand All @@ -1962,8 +1962,8 @@ https://sourceforge.net/tracker/index.php?func=detail&amp;aid=3512902&amp;group_
<obo:IAO_0000117>John Judkins</obo:IAO_0000117>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<rdfs:label>BioGents</rdfs:label>
<obo:IAO_0000115>An organization that manufactures mosquito traps and other mosquito control products.</obo:IAO_0000115>
<obo:IAO_0000111>BioGents</obo:IAO_0000111>
<obo:IAO_0000115>An organization that manufactures mosquito traps and other mosquito control products.</obo:IAO_0000115>
<obo:IAO_0000119>WEB:https://eu.biogents.com/about-biogents/</obo:IAO_0000119>
</rdf:Description>
</rdf:RDF>
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4 changes: 2 additions & 2 deletions src/ontology/imports/omo_import.owl
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Expand Up @@ -12,9 +12,9 @@
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vibso/imports/omo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-09/imports/omo_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-10/imports/omo_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2022-04-27/omo.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-09</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-10</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/pato_import.owl
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Expand Up @@ -12,9 +12,9 @@
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vibso/imports/pato_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-09/imports/pato_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-10/imports/pato_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/pato/releases/2022-12-15/pato.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-09</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-10</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/ro_import.owl
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Expand Up @@ -13,9 +13,9 @@
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vibso/imports/ro_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-09/imports/ro_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-10/imports/ro_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2023-01-04/ro.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-09</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-10</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/stato_import.owl
Original file line number Diff line number Diff line change
Expand Up @@ -9,8 +9,8 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vibso/imports/stato_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-09/imports/stato_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-09</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-10/imports/stato_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-10</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/txpo_import.owl
Original file line number Diff line number Diff line change
Expand Up @@ -9,9 +9,9 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vibso/imports/txpo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-09/imports/txpo_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vibso/releases/2023-01-10/imports/txpo_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/txpo/releases/2022-12-07/txpo.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-09</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-01-10</owl:versionInfo>
</owl:Ontology>


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