Upgrade embedded Eigen to 3.2.1

MRPT · May 1, 2014 · 47913da · 47913da
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diff --git a/otherlibs/eigen3/Eigen/Cholesky b/otherlibs/eigen3/Eigen/Cholesky
@@ -5,8 +5,7 @@
 
 #include "src/Core/util/DisableStupidWarnings.h"
 
-/** \defgroup Cholesky_Module Cholesky module 
- * \ingroup eigen_grp
+/** \defgroup Cholesky_Module Cholesky module
   *
   *
   *

diff --git a/otherlibs/eigen3/Eigen/CholmodSupport b/otherlibs/eigen3/Eigen/CholmodSupport
@@ -10,8 +10,7 @@ extern "C" {
 }
 
 /** \ingroup Support_modules
-  * \defgroup CholmodSupport_Module CholmodSupport module 
- * \ingroup eigen_grp
+  * \defgroup CholmodSupport_Module CholmodSupport module
   *
   * This module provides an interface to the Cholmod library which is part of the <a href="http://www.cise.ufl.edu/research/sparse/SuiteSparse/">suitesparse</a> package.
   * It provides the two following main factorization classes:

diff --git a/otherlibs/eigen3/Eigen/Core b/otherlibs/eigen3/Eigen/Core
@@ -238,9 +238,7 @@ using std::size_t;
 // gcc 4.6.0 wants std:: for ptrdiff_t 
 using std::ptrdiff_t;
 
-/** \defgroup eigen_grp The Eigen3 library 
-  \defgroup Core_Module Core module 
- * \ingroup eigen_grp
+/** \defgroup Core_Module Core module
   * This is the main module of Eigen providing dense matrix and vector support
   * (both fixed and dynamic size) with all the features corresponding to a BLAS library
   * and much more...

diff --git a/otherlibs/eigen3/Eigen/Eigen2Support b/otherlibs/eigen3/Eigen/Eigen2Support
@@ -14,13 +14,25 @@
 #error Eigen2 support must be enabled by defining EIGEN2_SUPPORT before including any Eigen header
 #endif
 
+#ifndef EIGEN_NO_EIGEN2_DEPRECATED_WARNING
+
+#if defined(__GNUC__) || defined(__INTEL_COMPILER) || defined(__clang__)
+#warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)"
+#else
+#pragma message ("Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)")
+#endif
+
+#endif // EIGEN_NO_EIGEN2_DEPRECATED_WARNING
+
 #include "src/Core/util/DisableStupidWarnings.h"
 
 /** \ingroup Support_modules
-  * \defgroup Eigen2Support_Module Eigen2 support module 
- * \ingroup eigen_grp
-  * This module provides a couple of deprecated functions improving the compatibility with Eigen2.
+  * \defgroup Eigen2Support_Module Eigen2 support module
+  *
+  * \warning Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3.
   *
+  * This module provides a couple of deprecated functions improving the compatibility with Eigen2.
+  * 
   * To use it, define EIGEN2_SUPPORT before including any Eigen header
   * \code
   * #define EIGEN2_SUPPORT

diff --git a/otherlibs/eigen3/Eigen/Eigenvalues b/otherlibs/eigen3/Eigen/Eigenvalues
@@ -11,8 +11,7 @@
 #include "LU"
 #include "Geometry"
 
-/** \defgroup Eigenvalues_Module Eigenvalues module 
- * \ingroup eigen_grp
+/** \defgroup Eigenvalues_Module Eigenvalues module
   *
   *
   *

diff --git a/otherlibs/eigen3/Eigen/Geometry b/otherlibs/eigen3/Eigen/Geometry
@@ -13,8 +13,7 @@
 #define M_PI 3.14159265358979323846
 #endif
 
-/** \defgroup Geometry_Module Geometry module 
- * \ingroup eigen_grp
+/** \defgroup Geometry_Module Geometry module
   *
   *
   *

diff --git a/otherlibs/eigen3/Eigen/Householder b/otherlibs/eigen3/Eigen/Householder
@@ -5,8 +5,7 @@
 
 #include "src/Core/util/DisableStupidWarnings.h"
 
-/** \defgroup Householder_Module Householder module 
- * \ingroup eigen_grp
+/** \defgroup Householder_Module Householder module
   * This module provides Householder transformations.
   *
   * \code

diff --git a/otherlibs/eigen3/Eigen/IterativeLinearSolvers b/otherlibs/eigen3/Eigen/IterativeLinearSolvers
@@ -7,8 +7,7 @@
 #include "src/Core/util/DisableStupidWarnings.h"
 
 /** 
-  * \defgroup IterativeLinearSolvers_Module IterativeLinearSolvers module 
- * \ingroup eigen_grp
+  * \defgroup IterativeLinearSolvers_Module IterativeLinearSolvers module
   *
   * This module currently provides iterative methods to solve problems of the form \c A \c x = \c b, where \c A is a squared matrix, usually very large and sparse.
   * Those solvers are accessible via the following classes:

diff --git a/otherlibs/eigen3/Eigen/Jacobi b/otherlibs/eigen3/Eigen/Jacobi
@@ -5,8 +5,7 @@
 
 #include "src/Core/util/DisableStupidWarnings.h"
 
-/** \defgroup Jacobi_Module Jacobi module 
- * \ingroup eigen_grp
+/** \defgroup Jacobi_Module Jacobi module
   * This module provides Jacobi and Givens rotations.
   *
   * \code

diff --git a/otherlibs/eigen3/Eigen/LU b/otherlibs/eigen3/Eigen/LU
@@ -5,8 +5,7 @@
 
 #include "src/Core/util/DisableStupidWarnings.h"
 
-/** \defgroup LU_Module LU module 
- * \ingroup eigen_grp
+/** \defgroup LU_Module LU module
   * This module includes %LU decomposition and related notions such as matrix inversion and determinant.
   * This module defines the following MatrixBase methods:
   *  - MatrixBase::inverse()

diff --git a/otherlibs/eigen3/Eigen/LeastSquares b/otherlibs/eigen3/Eigen/LeastSquares
@@ -15,8 +15,7 @@
 #include "Eigenvalues"
 #include "Geometry"
 
-/** \defgroup LeastSquares_Module LeastSquares module 
- * \ingroup eigen_grp
+/** \defgroup LeastSquares_Module LeastSquares module
   * This module provides linear regression and related features.
   *
   * \code

diff --git a/otherlibs/eigen3/Eigen/MetisSupport b/otherlibs/eigen3/Eigen/MetisSupport
@@ -11,8 +11,7 @@ extern "C" {
 
 
 /** \ingroup Support_modules
-  * \defgroup MetisSupport_Module MetisSupport module 
- * \ingroup eigen_grp
+  * \defgroup MetisSupport_Module MetisSupport module
   *
   * \code
   * #include <Eigen/MetisSupport>

diff --git a/otherlibs/eigen3/Eigen/OrderingMethods b/otherlibs/eigen3/Eigen/OrderingMethods
@@ -6,8 +6,7 @@
 #include "src/Core/util/DisableStupidWarnings.h"
 
 /** 
-  * \defgroup OrderingMethods_Module OrderingMethods module 
- * \ingroup eigen_grp
+  * \defgroup OrderingMethods_Module OrderingMethods module
   *
   * This module is currently for internal use only
   * 

diff --git a/otherlibs/eigen3/Eigen/PaStiXSupport b/otherlibs/eigen3/Eigen/PaStiXSupport
@@ -16,8 +16,7 @@ extern "C" {
 #endif
 
 /** \ingroup Support_modules
-  * \defgroup PaStiXSupport_Module PaStiXSupport module 
- * \ingroup eigen_grp
+  * \defgroup PaStiXSupport_Module PaStiXSupport module
   * 
   * This module provides an interface to the <a href="http://pastix.gforge.inria.fr/">PaSTiX</a> library.
   * PaSTiX is a general \b supernodal, \b parallel and \b opensource sparse solver.

diff --git a/otherlibs/eigen3/Eigen/PardisoSupport b/otherlibs/eigen3/Eigen/PardisoSupport
@@ -10,8 +10,7 @@
 #include <unsupported/Eigen/SparseExtra>
 
 /** \ingroup Support_modules
-  * \defgroup PardisoSupport_Module PardisoSupport module 
- * \ingroup eigen_grp
+  * \defgroup PardisoSupport_Module PardisoSupport module
   *
   * This module brings support for the Intel(R) MKL PARDISO direct sparse solvers.
   *

diff --git a/otherlibs/eigen3/Eigen/QR b/otherlibs/eigen3/Eigen/QR
@@ -9,8 +9,7 @@
 #include "Jacobi"
 #include "Householder"
 
-/** \defgroup QR_Module QR module 
- * \ingroup eigen_grp
+/** \defgroup QR_Module QR module
   *
   *
   *

diff --git a/otherlibs/eigen3/Eigen/SPQRSupport b/otherlibs/eigen3/Eigen/SPQRSupport
@@ -8,8 +8,7 @@
 #include "SuiteSparseQR.hpp"
 
 /** \ingroup Support_modules
-  * \defgroup SPQRSupport_Module SuiteSparseQR module 
- * \ingroup eigen_grp
+  * \defgroup SPQRSupport_Module SuiteSparseQR module
   * 
   * This module provides an interface to the SPQR library, which is part of the <a href="http://www.cise.ufl.edu/research/sparse/SuiteSparse/">suitesparse</a> package.
   *

diff --git a/otherlibs/eigen3/Eigen/SVD b/otherlibs/eigen3/Eigen/SVD
@@ -7,8 +7,7 @@
 
 #include "src/Core/util/DisableStupidWarnings.h"
 
-/** \defgroup SVD_Module SVD module 
- * \ingroup eigen_grp
+/** \defgroup SVD_Module SVD module
   *
   *
   *

diff --git a/otherlibs/eigen3/Eigen/Sparse b/otherlibs/eigen3/Eigen/Sparse
@@ -1,8 +1,7 @@
 #ifndef EIGEN_SPARSE_MODULE_H
 #define EIGEN_SPARSE_MODULE_H
 
-/** \defgroup Sparse_Module Sparse meta-module 
- * \ingroup eigen_grp
+/** \defgroup Sparse_Module Sparse meta-module
   *
   * Meta-module including all related modules:
   * - \ref SparseCore_Module

diff --git a/otherlibs/eigen3/Eigen/SparseCholesky b/otherlibs/eigen3/Eigen/SparseCholesky
@@ -16,8 +16,7 @@
 #include "src/Core/util/DisableStupidWarnings.h"
 
 /** 
-  * \defgroup SparseCholesky_Module SparseCholesky module 
- * \ingroup eigen_grp
+  * \defgroup SparseCholesky_Module SparseCholesky module
   *
   * This module currently provides two variants of the direct sparse Cholesky decomposition for selfadjoint (hermitian) matrices.
   * Those decompositions are accessible via the following classes:

diff --git a/otherlibs/eigen3/Eigen/SparseCore b/otherlibs/eigen3/Eigen/SparseCore
@@ -12,8 +12,7 @@
 #include <algorithm>
 
 /** 
-  * \defgroup SparseCore_Module SparseCore module 
- * \ingroup eigen_grp
+  * \defgroup SparseCore_Module SparseCore module
   *
   * This module provides a sparse matrix representation, and basic associatd matrix manipulations
   * and operations.

diff --git a/otherlibs/eigen3/Eigen/SparseLU b/otherlibs/eigen3/Eigen/SparseLU
@@ -14,8 +14,7 @@
 #include "SparseCore"
 
 /** 
-  * \defgroup SparseLU_Module SparseLU module 
- * \ingroup eigen_grp
+  * \defgroup SparseLU_Module SparseLU module
   * This module defines a supernodal factorization of general sparse matrices.
   * The code is fully optimized for supernode-panel updates with specialized kernels.
   * Please, see the documentation of the SparseLU class for more details.

diff --git a/otherlibs/eigen3/Eigen/SparseQR b/otherlibs/eigen3/Eigen/SparseQR
@@ -5,8 +5,7 @@
 #include "OrderingMethods"
 #include "src/Core/util/DisableStupidWarnings.h"
 
-/** \defgroup SparseQR_Module SparseQR module 
- * \ingroup eigen_grp
+/** \defgroup SparseQR_Module SparseQR module
   * \brief Provides QR decomposition for sparse matrices
   * 
   * This module provides a simplicial version of the left-looking Sparse QR decomposition. 

diff --git a/otherlibs/eigen3/Eigen/SuperLUSupport b/otherlibs/eigen3/Eigen/SuperLUSupport
@@ -29,8 +29,7 @@ typedef int int_t;
 namespace Eigen { struct SluMatrix; }
 
 /** \ingroup Support_modules
-  * \defgroup SuperLUSupport_Module SuperLUSupport module 
- * \ingroup eigen_grp
+  * \defgroup SuperLUSupport_Module SuperLUSupport module
   *
   * This module provides an interface to the <a href="http://crd-legacy.lbl.gov/~xiaoye/SuperLU/">SuperLU</a> library.
   * It provides the following factorization class:

diff --git a/otherlibs/eigen3/Eigen/UmfPackSupport b/otherlibs/eigen3/Eigen/UmfPackSupport
@@ -10,8 +10,7 @@ extern "C" {
 }
 
 /** \ingroup Support_modules
-  * \defgroup UmfPackSupport_Module UmfPackSupport module 
- * \ingroup eigen_grp
+  * \defgroup UmfPackSupport_Module UmfPackSupport module
   *
   * This module provides an interface to the UmfPack library which is part of the <a href="http://www.cise.ufl.edu/research/sparse/SuiteSparse/">suitesparse</a> package.
   * It provides the following factorization class: