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docs: add tsalo as a contributor #321

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Jun 3, 2019
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docs: add tsalo as a contributor #321

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3da32ae
docs: update README.md
allcontributors[bot] May 26, 2019
b37ea5c
docs: update .all-contributorsrc
allcontributors[bot] May 26, 2019
b32cc87
docs: update README.md
allcontributors[bot] May 26, 2019
40261bf
docs: update .all-contributorsrc
allcontributors[bot] May 26, 2019
60544f8
docs: update README.md
allcontributors[bot] Jun 1, 2019
708101c
docs: update .all-contributorsrc
allcontributors[bot] Jun 1, 2019
ac6d12e
Fix merge conflicts
KirstieJane Jun 3, 2019
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5 changes: 3 additions & 2 deletions .all-contributorsrc
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Expand Up @@ -85,7 +85,8 @@
"ideas",
"doc",
"tutorial",
"question"
"question",
"bug"
]
},
{
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},
{
"login": "monicayao",
"name": "monicayao",
"name": "Monica Yao",
"avatar_url": "https://avatars1.githubusercontent.com/u/35382166?v=4",
"profile": "https://github.com/monicayao",
"contributions": [
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21 changes: 11 additions & 10 deletions README.md
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@@ -1,4 +1,5 @@
# tedana: TE Dependent ANAlysis
[![All Contributors](https://img.shields.io/badge/all_contributors-10-orange.svg?style=flat-square)](#contributors)

The ``tedana`` package is part of the ME-ICA pipeline, performing TE-dependent
analysis of multi-echo functional magnetic resonance imaging (fMRI) data.
Expand Down Expand Up @@ -32,11 +33,11 @@ More information and documentation can be found at https://tedana.readthedocs.io
You'll need to set up a working development environment to use `tedana`.
To set up a local environment, you will need Python >=3.5 and the following packages will need to be installed:

[numpy](http://www.numpy.org/)
[scipy](https://www.scipy.org/)
[scikit-learn](http://scikit-learn.org/stable/)
[nilearn](https://nilearn.github.io/)
[nibabel>=2.1.0](http://nipy.org/nibabel/)
[numpy](http://www.numpy.org/)
[scipy](https://www.scipy.org/)
[scikit-learn](http://scikit-learn.org/stable/)
[nilearn](https://nilearn.github.io/)
[nibabel>=2.1.0](http://nipy.org/nibabel/)

You can then install `tedana` with

Expand All @@ -51,7 +52,7 @@ We recommend using [miniconda3](https://conda.io/miniconda.html).
After installation, you can use the following commands to create an environment for `tedana`:

```bash
conda create -n ENVIRONMENT_NAME python=3 pip mdp numpy scikit-learn scipy
conda create -n ENVIRONMENT_NAME python=3 pip mdp numpy scikit-learn scipy
conda activate ENVIRONMENT_NAME
pip install nilearn nibabel
pip install tedana
Expand Down Expand Up @@ -79,12 +80,12 @@ To get started, check out [our contributing guidelines](https://github.com/ME-IC
Want to learn more about our plans for developing ``tedana``?
Have a question, comment, or suggestion?
Open or comment on one of [our issues](https://github.com/ME-ICA/tedana/issues)!
If you're not sure where to begin,
feel free to pop into [Gitter](https://gitter.im/ME-ICA/tedana) and
If you're not sure where to begin,
feel free to pop into [Gitter](https://gitter.im/ME-ICA/tedana) and
introduce yourself! We will be happy to help you find somewhere to get
started.

We ask that all contributors to ``tedana`` across all project-related
We ask that all contributors to ``tedana`` across all project-related
spaces (including but not limited to: GitHub, Gitter, and project emails),
adhere to our
[code of conduct](https://github.com/ME-ICA/tedana/blob/master/CODE_OF_CONDUCT.md).
Expand All @@ -95,7 +96,7 @@ Thanks goes to these wonderful people ([emoji key](https://allcontributors.org/d

<!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section -->
<!-- prettier-ignore -->
<table><tr><td align="center"><a href="https://github.com/dowdlelt"><img src="https://avatars2.githubusercontent.com/u/15126366?v=4" width="100px;" alt="Logan Dowdle"/><br /><sub><b>Logan Dowdle</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=dowdlelt" title="Code">💻</a> <a href="#question-dowdlelt" title="Answering Questions">💬</a> <a href="#design-dowdlelt" title="Design">🎨</a> <a href="https://github.com/ME-ICA/tedana/issues?q=author%3Adowdlelt" title="Bug reports">🐛</a></td><td align="center"><a href="http://emdupre.me"><img src="https://avatars3.githubusercontent.com/u/15017191?v=4" width="100px;" alt="Elizabeth DuPre"/><br /><sub><b>Elizabeth DuPre</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=emdupre" title="Code">💻</a> <a href="https://github.com/ME-ICA/tedana/commits?author=emdupre" title="Documentation">📖</a> <a href="#ideas-emdupre" title="Ideas, Planning, & Feedback">🤔</a> <a href="#infra-emdupre" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#review-emdupre" title="Reviewed Pull Requests">👀</a> <a href="#example-emdupre" title="Examples">💡</a> <a href="https://github.com/ME-ICA/tedana/commits?author=emdupre" title="Tests">⚠️</a> <a href="#question-emdupre" title="Answering Questions">💬</a></td><td align="center"><a href="https://github.com/javiergcas"><img src="https://avatars1.githubusercontent.com/u/7314358?v=4" width="100px;" alt="Javier Gonzalez-Castillo"/><br /><sub><b>Javier Gonzalez-Castillo</b></sub></a><br /><a href="#ideas-javiergcas" title="Ideas, Planning, & Feedback">🤔</a></td><td align="center"><a href="https://github.com/handwerkerd"><img src="https://avatars3.githubusercontent.com/u/7406227?v=4" width="100px;" alt="Dan Handwerker"/><br /><sub><b>Dan Handwerker</b></sub></a><br /><a href="#design-handwerkerd" title="Design">🎨</a> <a href="https://github.com/ME-ICA/tedana/commits?author=handwerkerd" title="Documentation">📖</a> <a href="#example-handwerkerd" title="Examples">💡</a> <a href="#review-handwerkerd" title="Reviewed Pull Requests">👀</a></td><td align="center"><a href="https://github.com/prantikk"><img src="https://avatars0.githubusercontent.com/u/1636689?v=4" width="100px;" alt="Prantik Kundu"/><br /><sub><b>Prantik Kundu</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=prantikk" title="Code">💻</a> <a href="#ideas-prantikk" title="Ideas, Planning, & Feedback">🤔</a></td></tr><tr><td align="center"><a href="http://rossmarkello.me"><img src="https://avatars0.githubusercontent.com/u/14265705?v=4" width="100px;" alt="Ross Markello"/><br /><sub><b>Ross Markello</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=rmarkello" title="Code">💻</a> <a href="#infra-rmarkello" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#question-rmarkello" title="Answering Questions">💬</a></td><td align="center"><a href="http://tsalo.github.io"><img src="https://avatars3.githubusercontent.com/u/8228902?v=4" width="100px;" alt="Taylor Salo"/><br /><sub><b>Taylor Salo</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=tsalo" title="Code">💻</a> <a href="#ideas-tsalo" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/ME-ICA/tedana/commits?author=tsalo" title="Documentation">📖</a> <a href="#tutorial-tsalo" title="Tutorials">✅</a> <a href="#question-tsalo" title="Answering Questions">💬</a></td><td align="center"><a href="https://github.com/jbteves"><img src="https://avatars3.githubusercontent.com/u/26722533?v=4" width="100px;" alt="Joshua Teves"/><br /><sub><b>Joshua Teves</b></sub></a><br /><a href="#projectManagement-jbteves" title="Project Management">📆</a> <a href="https://github.com/ME-ICA/tedana/commits?author=jbteves" title="Documentation">📖</a> <a href="#review-jbteves" title="Reviewed Pull Requests">👀</a> <a href="#maintenance-jbteves" title="Maintenance">🚧</a></td><td align="center"><a href="https://whitakerlab.github.io"><img src="https://avatars1.githubusercontent.com/u/3626306?v=4" width="100px;" alt="Kirstie Whitaker"/><br /><sub><b>Kirstie Whitaker</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=KirstieJane" title="Documentation">📖</a> <a href="#projectManagement-KirstieJane" title="Project Management">📆</a> <a href="#review-KirstieJane" title="Reviewed Pull Requests">👀</a> <a href="#talk-KirstieJane" title="Talks">📢</a></td><td align="center"><a href="https://github.com/monicayao"><img src="https://avatars1.githubusercontent.com/u/35382166?v=4" width="100px;" alt="monicayao"/><br /><sub><b>monicayao</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=monicayao" title="Documentation">📖</a></td></tr></table>
<table><tr><td align="center"><a href="https://github.com/dowdlelt"><img src="https://avatars2.githubusercontent.com/u/15126366?v=4" width="100px;" alt="Logan Dowdle"/><br /><sub><b>Logan Dowdle</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=dowdlelt" title="Code">💻</a> <a href="#question-dowdlelt" title="Answering Questions">💬</a> <a href="#design-dowdlelt" title="Design">🎨</a> <a href="https://github.com/ME-ICA/tedana/issues?q=author%3Adowdlelt" title="Bug reports">🐛</a></td><td align="center"><a href="http://emdupre.me"><img src="https://avatars3.githubusercontent.com/u/15017191?v=4" width="100px;" alt="Elizabeth DuPre"/><br /><sub><b>Elizabeth DuPre</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=emdupre" title="Code">💻</a> <a href="https://github.com/ME-ICA/tedana/commits?author=emdupre" title="Documentation">📖</a> <a href="#ideas-emdupre" title="Ideas, Planning, & Feedback">🤔</a> <a href="#infra-emdupre" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#review-emdupre" title="Reviewed Pull Requests">👀</a> <a href="#example-emdupre" title="Examples">💡</a> <a href="https://github.com/ME-ICA/tedana/commits?author=emdupre" title="Tests">⚠️</a> <a href="#question-emdupre" title="Answering Questions">💬</a></td><td align="center"><a href="https://github.com/javiergcas"><img src="https://avatars1.githubusercontent.com/u/7314358?v=4" width="100px;" alt="Javier Gonzalez-Castillo"/><br /><sub><b>Javier Gonzalez-Castillo</b></sub></a><br /><a href="#ideas-javiergcas" title="Ideas, Planning, & Feedback">🤔</a></td><td align="center"><a href="https://github.com/handwerkerd"><img src="https://avatars3.githubusercontent.com/u/7406227?v=4" width="100px;" alt="Dan Handwerker"/><br /><sub><b>Dan Handwerker</b></sub></a><br /><a href="#design-handwerkerd" title="Design">🎨</a> <a href="https://github.com/ME-ICA/tedana/commits?author=handwerkerd" title="Documentation">📖</a> <a href="#example-handwerkerd" title="Examples">💡</a> <a href="#review-handwerkerd" title="Reviewed Pull Requests">👀</a></td><td align="center"><a href="https://github.com/prantikk"><img src="https://avatars0.githubusercontent.com/u/1636689?v=4" width="100px;" alt="Prantik Kundu"/><br /><sub><b>Prantik Kundu</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=prantikk" title="Code">💻</a> <a href="#ideas-prantikk" title="Ideas, Planning, & Feedback">🤔</a></td></tr><tr><td align="center"><a href="http://rossmarkello.me"><img src="https://avatars0.githubusercontent.com/u/14265705?v=4" width="100px;" alt="Ross Markello"/><br /><sub><b>Ross Markello</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=rmarkello" title="Code">💻</a> <a href="#infra-rmarkello" title="Infrastructure (Hosting, Build-Tools, etc)">🚇</a> <a href="#question-rmarkello" title="Answering Questions">💬</a></td><td align="center"><a href="http://tsalo.github.io"><img src="https://avatars3.githubusercontent.com/u/8228902?v=4" width="100px;" alt="Taylor Salo"/><br /><sub><b>Taylor Salo</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=tsalo" title="Code">💻</a> <a href="#ideas-tsalo" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/ME-ICA/tedana/commits?author=tsalo" title="Documentation">📖</a> <a href="#tutorial-tsalo" title="Tutorials">✅</a> <a href="#question-tsalo" title="Answering Questions">💬</a></td><td align="center"><a href="https://github.com/jbteves"><img src="https://avatars3.githubusercontent.com/u/26722533?v=4" width="100px;" alt="Joshua Teves"/><br /><sub><b>Joshua Teves</b></sub></a><br /><a href="#projectManagement-jbteves" title="Project Management">📆</a> <a href="https://github.com/ME-ICA/tedana/commits?author=jbteves" title="Documentation">📖</a> <a href="#review-jbteves" title="Reviewed Pull Requests">👀</a> <a href="#maintenance-jbteves" title="Maintenance">🚧</a></td><td align="center"><a href="https://whitakerlab.github.io"><img src="https://avatars1.githubusercontent.com/u/3626306?v=4" width="100px;" alt="Kirstie Whitaker"/><br /><sub><b>Kirstie Whitaker</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=KirstieJane" title="Documentation">📖</a> <a href="#projectManagement-KirstieJane" title="Project Management">📆</a> <a href="#review-KirstieJane" title="Reviewed Pull Requests">👀</a> <a href="#talk-KirstieJane" title="Talks">📢</a></td><td align="center"><a href="https://github.com/monicayao"><img src="https://avatars1.githubusercontent.com/u/35382166?v=4" width="100px;" alt="monicayao"/><br /><sub><b>Monica Yao</b></sub></a><br /><a href="https://github.com/ME-ICA/tedana/commits?author=monicayao" title="Documentation">📖</a></td></tr></table>

<!-- ALL-CONTRIBUTORS-LIST:END -->

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