Upgrade build system

.git_archival.txt

@@ -0,0 +1,4 @@
+node: $Format:%H$
+node-date: $Format:%cI$
+describe-name: $Format:%(describe:tags=true,match=*[0-9]*)$
+ref-names: $Format:%D$

.gitattributes

@@ -1,2 +1,7 @@
 linguist-language=python
 notebooks/* linguist-vendored
+
+# Auto detect text files and perform LF normalization
+* text=auto
+
+.git_archival.txt export-subst

.gitignore

@@ -91,3 +91,5 @@ coverage.xml
 .DS_Store
 *.png
 *.mp4
+
+_version.py

.vscode/settings.json

@@ -1,6 +1,13 @@
 {
     "[python]": {
-        "editor.defaultFormatter": "ms-python.black-formatter"
+        "editor.defaultFormatter": "ms-python.black-formatter",
+        "editor.formatOnSave": true,
+        "editor.codeActionsOnSave": {
+            "source.organizeImports": "explicit"
+        },
     },
-    "python.formatting.provider": "none"
+    "isort.args": [
+        "--profile",
+        "black"
+    ],
 }

pyproject.toml

@@ -0,0 +1,38 @@
+[build-system]
+requires = ["hatchling", "hatch-vcs"]
+build-backend = "hatchling.build"
+
+[project]
+name = "track_linearization"
+description = "A python package to map 2D trajectories to 1D."
+readme = "README.md"
+requires-python = ">=3.8"
+license = { file = "LICENSE" }
+authors = [{ name = "Eric Denovellis", email = "[email protected]" }]
+classifiers = [
+    "Programming Language :: Python :: 3",
+    "License :: OSI Approved :: MIT License",
+    "Operating System :: OS Independent",
+]
+dependencies = ["numpy", "scipy", "matplotlib", "pandas", "dask", "networkx"]
+dynamic = ["version"]
+
+[project.urls]
+"Homepage" = "https://github.com/LorenFrankLab/track_linearization"
+"Bug Tracker" = "https://github.com/LorenFrankLab/track_linearization/issues"
+
+[project.optional-dependencies]
+test = ["black", "pytest", "pytest-cov"]
+opt = ["numba", "ipympl"]
+
+[tool.hatch.version]
+source = "vcs"
+
+[tool.hatch.build.hooks.vcs]
+version-file = "src/track_linearization/_version.py"
+
+[tool.hatch.build.targets.sdist]
+exclude = [".git_archival.txt"]
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/track_linearization"]

workflows/test_package_build.yml

@@ -0,0 +1,94 @@
+name: Test building package and publish
+
+on:
+  push:
+    branches:
+      - main
+      - maint/*
+    tags:
+      - "*"
+  pull_request:
+    branches:
+      - main
+      - maint/*
+defaults:
+  run:
+    shell: bash
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+      - run: pip install --upgrade build twine
+      - name: Build sdist and wheel
+        run: python -m build
+      - run: twine check dist/*
+      - name: Upload sdist and wheel artifacts
+        uses: actions/upload-artifact@v3
+        with:
+          name: dist
+          path: dist/
+      - name: Build git archive
+        run: mkdir archive && git archive -v -o archive/archive.tgz HEAD
+      - name: Upload git archive artifact
+        uses: actions/upload-artifact@v3
+        with:
+          name: archive
+          path: archive/
+  test-package:
+    runs-on: ubuntu-latest
+    needs: [build]
+    strategy:
+      matrix:
+        package: ['wheel', 'sdist', 'archive']
+    steps:
+      - name: Download sdist and wheel artifacts
+        if: matrix.package != 'archive'
+        uses: actions/download-artifact@v3
+        with:
+          name: dist
+          path: dist/
+      - name: Download git archive artifact
+        if: matrix.package == 'archive'
+        uses: actions/download-artifact@v3
+        with:
+          name: archive
+          path: archive/
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+      - name: Display Python version
+        run: python -c "import sys; print(sys.version)"
+      - name: Update pip
+        run: pip install --upgrade pip
+      - name: Install wheel
+        if: matrix.package == 'wheel'
+        run: pip install dist/*.whl
+      - name: Install sdist
+        if: matrix.package == 'sdist'
+        run: pip install dist/*.tar.gz
+      - name: Install archive
+        if: matrix.package == 'archive'
+        run: pip install archive/archive.tgz
+      - name: Install test extras
+        run: pip install package_name[test]
+      - name: Run tests
+        run: pytest --doctest-modules -v --pyargs track_linearization
+  publish:
+    runs-on: ubuntu-latest
+    needs: [test-package]
+    if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/')
+    steps:
+      - uses: actions/download-artifact@v3
+        with:
+          name: dist
+          path: dist/
+      - uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          user: __token__
+          password: ${{ secrets.PYPI_API_TOKEN }}