Feature/chgres cube grib2 atmos #1
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Update build of 'fre-nctools', 'nst_tf_chg', 'nems_util' and 'orog' programs for Hera. Remove references to Theia.
Update 'emcsfc' and 'sfc_climo_gen' build for Hera. Add better logic to 'machine-setup.sh' to determine if on Hera.
Update 'chgres', 'chgres_cube' and 'global_cycle' to build on Hera. All programs can now be compiled on Hera.
Update to intel v15 for chgres on phase 1/2. This is required because other machines use newer versions that require the -qopenmp flag. v14 only recognized -openmp.
Update "link_fixdirs.sh" for Hera. Remove references to Theia.
…nity#9) Remove 'nemsio_cvt' source code and adjust build script accordingly.
Merge branch 'develop' into feature/hera_port
Create new grid driver script for Hera. Remove Theia version. Update sfc_climo_gen build module to point to George V's copy of esmf. Other users could not compile using the other esmf module.
Point to George V's copy of the nesmio library instead of the 'official' version. The nemsio utilities did not work with the 'official' version - they return bad istat (-41) when reading. Either the official version was compiled wrong or as a newer version (v2.5) it may be incompatible with the programs.
Dexin compiled nemsio v2.2.3 on Hera and it was successfully tested with the nemsio utilities. Switch to v2.2.3 for all programs.
Baseline the batch submission wrappers per request of global workflow group. These are used by the chgres script. Previously, they resided in the glopara home directories on each machine.
Updates to run 'fv3gfs_chgres.sh' on Hera.
Remove unused "module-setup.csh.inc" Update "ush/fv3gfs_chgres.sh" to point to new location for 'sub_wcoss' scripts. Remove some commented out code. Update "module-setup.sh.inc" for Hera.
Update location of zero bia file on hera.
Kate moved the climo files for program "sfc_climo_gen" to the standard location along with the other fixed files. Update "sorc/link_fixdirs.sh" accordingly.
Add the "mkgfsnemsioctl" utility from the global-workflow repository.
This merge references ufs-community#14 set FNMSKH=${FNMSKH:-${FIXam}/global_slmask.t1534.3072.1536.grb} instead of FNMSKH=${FNMSKH:-${FIXam}/seaice_newland.grb} to use high-res land-sea mask in global_chgres.sh and global_cycle.sh for interpolation of climatological SST etc. This is needed to reduce lake temperature biases for GFS.v16 development.
Merge branch 'develop' into feature/hera_port
Detect if running on Hera by checking for the existence of the /scratch1 directory per recommendation of the original designer. Previously, hostname was used. There is some concern that using 'hostname' will not work on the compute nodes (although I did not see a problem with my tests).
./ush/fv3gfs_chgres.sh - increase Hera wall time to 3 hours.
Update serial chgres to use netcdf 4.7.0 and hdf 1.10.5 (on hera) per request of global workflow group.
Hera build modules - Remove unneeded module loads. Point to standard location for libraries instead of George V's home directory. Update cycle program to use netcdf 4.7 per request of global workflow group.
Update remaining programs to use netcdf 4.7 per request of global workflow group. For esmf, use gwv's copy of version 8 compiled with netcdf 4.7.
develop: Create a set of regression tests for chgres_cube program. This commit references issue ufs-community#5 .
Merge branch 'develop' into feature/hera_port
develop: This commit references #1 Update repository to run on Hera, the replacement for Theia. Remove all references to Theia.
…y#18 (ufs-community#20) develop: This commit references issue ufs-community#18. Updates to global_cycle: Tf analysis for the grids with sea ice done using a salinity dependent formula (instead of using 271.2 K). Update sfcsub.F to the latest version used by the forecast model (includes elimination of masked interpolation for substrate temperature and some updates to Fortran 90 standards). The global_cycle.sh script was updated to reference a new global salinity dataset. Updates to global_chgres - Update sfcsub.F to use same version as global_cycle.
Update sfc_climo_gen and chgres_cube programs: For regrid options other than conservative and neighbor, change pole method from NONE to ALLAVG. This prevents interpolation problems near the poles.
LarissaReames-NOAA
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LarissaReames-NOAA:feature/chgres_cube_grib2_atmos
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Mar 25, 2020
Add macOS/clang support
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Mar 25, 2020
* CMakeLists.txt: remove dependency on HDF5 and NetCDF * Cleanup of NetCDF in CMakeLists.txt
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Sep 10, 2020
proper fix for GNU syntax errors
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This pull request syncs this branch with the latest official develop branch and the hera_port branch in GeorgeGayno's fork.