plotKDE(fg, [:l0;:l1]) StackOverflowError #65

Affie · 2019-10-16T09:40:23Z

julia 1.2
new environment
]add IncrementalInference
]add RoMEPlotting
[904591bb] IncrementalInference v0.7.8
[238d586b] RoMEPlotting v0.1.7

plotKDE(fg, [:l0;:l1])
ERROR: StackOverflowError:
Stacktrace:
 [1] _array_for at ./boot.jl:404 [inlined]
 [2] collect(::Base.Generator{Array{Any,1},typeof(Compose.parse_colorant)}) at ./array.jl:608
 [3] parse_colorant at /home/johan/.julia/packages/Compose/aVZwV/src/Compose.jl:43 [inlined]
 [4] Gadfly.Guide.ManualColorKey(::String, ::Array{String,1}, ::Array{Any,1}) at /home/johan/.julia/packages/Gadfly/09PWZ/src/guide.jl:505 (repeats 15271 times)
 [5] #plotKDE#15(::Array{String,1}, ::Int64, ::Float64, ::Float64, ::Nothing, ::Nothing, ::String, ::Nothing, ::Array{String,1}, ::Nothing, ::Int64, ::Bool, ::Bool, ::Nothing, ::typeof(plotKDE), ::Array{BallTreeDensity,1}) at /home/johan/.julia/packages/KernelDensityEstimatePlotting/5LU2K/src/KernelDensityEstimatePlotting.jl:342
 [6] #plotKDE at ./array.jl:0 [inlined]
 [7] #plotKDE#2(::Array{BallTreeDensity,1}, ::Nothing, ::Nothing, ::Int64, ::Bool, ::Array{String,1}, ::typeof(plotKDE), ::DistributedFactorGraphs.GraphsDFG{SolverParams}, ::Array{Symbol,1}) at /home/johan/.julia/packages/RoMEPlotting/eFz0M/src/SolverVisualization.jl:80
 [8] plotKDE(::DistributedFactorGraphs.GraphsDFG{SolverParams}, ::Array{Symbol,1}) at /home/johan/.julia/packages/RoMEPlotting/eFz0M/src/SolverVisualization.jl:65
 [9] top-level scope at none:0

Affie · 2019-10-16T09:45:46Z

also

plotKDE(fg,:l0)
┌ Warning: evaluateDualTree vector evaluation API is changing for single point evaluation across multiple dimensions rather than assuming multiple points on a univariate kde.
└ @ KernelDensityEstimate ~/.julia/packages/KernelDensityEstimate/igUGE/src/DualTree01.jl:432
Error showing value of type Plot:
ERROR: MethodError: no method matching unsafe_wrap(::Type{Array}, ::Ptr{UInt8})
Closest candidates are:
  unsafe_wrap(::Union{Type{Array}, Type{Array{T,N} where N}, Type{Array{T,N}}}, ::Ptr{T}, ::Tuple{Vararg{Int64,N}}; own) where {T, N} at pointer.jl:84
  unsafe_wrap(::Union{Type{Array}, Type{Array{T,N} where N}, Type{Array{T,1}}}, ::Ptr{T}, ::Integer; own) where T at pointer.jl:89
  unsafe_wrap(::Type, ::Ptr, ::Tuple{Vararg{#s73,N}} where #s73<:Integer; own) where N at pointer.jl:92
Stacktrace:
 [1] pango_to_svg(::String) at /home/johan/.julia/packages/Compose/aVZwV/src/pango.jl:336
 [2] draw(::SVG, ::Compose.TextPrimitive{Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}},Compose.Rotation{Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}}},Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}}}, ::Int64) at /home/johan/.julia/packages/Compose/aVZwV/src/svg.jl:985
 [3] draw(::SVG, ::Compose.Form{Compose.TextPrimitive{Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}},Compose.Rotation{Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}}},Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}}}}) at /home/johan/.julia/packages/Compose/aVZwV/src/svg.jl:736
 [4] drawpart(::SVG, ::Compose.Context, ::Compose.IdentityTransform, ::Compose.UnitBox{Float64,Float64,Float64,Float64}, ::Measures.BoundingBox{Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}},Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}}}) at /home/johan/.julia/packages/Compose/aVZwV/src/container.jl:455
 [5] drawpart(::SVG, ::Compose.AdhocContainerPromise, ::Compose.IdentityTransform, ::Compose.UnitBox{Float64,Float64,Float64,Float64}, ::Measures.BoundingBox{Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}},Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}}}) at /home/johan/.julia/packages/Compose/aVZwV/src/container.jl:368
 [6] drawpart(::SVG, ::Compose.Context, ::Compose.IdentityTransform, ::Compose.UnitBox{Float64,Float64,Float64,Float64}, ::Measures.BoundingBox{Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}},Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}}}) at /home/johan/.julia/packages/Compose/aVZwV/src/container.jl:487 (repeats 2 times)
 [7] drawpart(::SVG, ::Compose.Table, ::Compose.IdentityTransform, ::Compose.UnitBox{Float64,Float64,Float64,Float64}, ::Measures.BoundingBox{Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}},Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}}}) at /home/johan/.julia/packages/Compose/aVZwV/src/container.jl:368
 [8] drawpart(::SVG, ::Compose.Context, ::Compose.IdentityTransform, ::Compose.UnitBox{Float64,Float64,Float64,Float64}, ::Measures.BoundingBox{Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}},Tuple{Measures.Length{:mm,Float64},Measures.Length{:mm,Float64}}}) at /home/johan/.julia/packages/Compose/aVZwV/src/container.jl:487 (repeats 2 times)
 [9] draw at /home/johan/.julia/packages/Compose/aVZwV/src/container.jl:334 [inlined]
 [10] draw at /home/johan/.julia/packages/Gadfly/09PWZ/src/Gadfly.jl:854 [inlined]
 [11] show(::IOContext{Base.GenericIOBuffer{Array{UInt8,1}}}, ::MIME{Symbol("application/juno+plotpane")}, ::Plot) at /home/johan/.julia/packages/Gadfly/09PWZ/src/Gadfly.jl:960
 [12] show(::IOContext{Base.GenericIOBuffer{Array{UInt8,1}}}, ::String, ::Plot) at ./multimedia.jl:109
 [13] displayinplotpane(::Plot) at /home/johan/.julia/packages/Atom/X8fAI/src/display/showdisplay.jl:51
 [14] display(::Atom.JunoDisplay, ::Plot) at /home/johan/.julia/packages/Atom/X8fAI/src/display/showdisplay.jl:112
 [15] display(::Any) at ./multimedia.jl:323
 [16] #invokelatest#1 at ./essentials.jl:790 [inlined]
 [17] invokelatest at ./essentials.jl:789 [inlined]
 [18] print_response(::IO, ::Any, ::Bool, ::Bool, ::Any) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/REPL.jl:156
 [19] print_response(::REPL.AbstractREPL, ::Any, ::Bool, ::Bool) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/REPL.jl:141
 [20] (::getfield(REPL, Symbol("#do_respond#38")){Bool,getfield(Atom, Symbol("##176#177")),REPL.LineEditREPL,REPL.LineEdit.Prompt})(::Any, ::Any, ::Any) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/REPL.jl:718
 [21] #invokelatest#1 at ./essentials.jl:790 [inlined]
 [22] invokelatest at ./essentials.jl:789 [inlined]
 [23] run_interface(::REPL.Terminals.TextTerminal, ::REPL.LineEdit.ModalInterface, ::REPL.LineEdit.MIState) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/LineEdit.jl:2306
 [24] run_frontend(::REPL.LineEditREPL, ::REPL.REPLBackendRef) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/REPL.jl:1038
 [25] run_repl(::REPL.AbstractREPL, ::Any) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/REPL.jl:201
 [26] (::getfield(Base, Symbol("##737#739")){Bool,Bool,Bool,Bool})(::Module) at ./client.jl:390
 [27] #invokelatest#1 at ./essentials.jl:790 [inlined]
 [28] invokelatest at ./essentials.jl:789 [inlined]
 [29] run_main_repl(::Bool, ::Bool, ::Bool, ::Bool, ::Bool) at ./client.jl:374
 [30] exec_options(::Base.JLOptions) at ./client.jl:312
 [31] _start() at ./client.jl:464

Affie · 2019-10-16T10:09:29Z

I can get plotKDE(fg, :x1) |> PDF(pwd()*"/tmp/test.pdf") to work

Affie · 2019-10-16T11:03:10Z

Pinning to:
[904591bb] IncrementalInference v0.7.8
[238d586b] RoMEPlotting v0.1.6 ⚲

julia> plotKDE(fg, :l0)
┌ Warning: evaluateDualTree vector evaluation API is changing for single point evaluation across multiple dimensions rather than assuming multiple points on a univariate kde.
└ @ KernelDensityEstimate ~/.julia/packages/KernelDensityEstimate/igUGE/src/DualTree01.jl:432
Error showing value of type Plot:
ERROR: TypeError: in typeassert, expected Compose.PangoLayout, got Nothing
Stacktrace:
 [1] max_text_extents at /home/johan/.julia/packages/Compose/aVZwV/src/pango.jl:109 [inlined]
 [2] max_text_extents(::String, ::Measures.Length{:mm,Float64}, ::String) at /home/johan/.julia/packages/Compose/aVZwV/src/pango.jl:124
 [3] render(::Gadfly.Guide.XLabel, ::Theme, ::Gadfly.Aesthetics) at /home/johan/.julia/packages/Gadfly/09PWZ/src/guide.jl:929
 [4] render(::Gadfly.Guide.XLabel, ::Theme, ::Gadfly.Aesthetics, ::Bool) at /home/johan/.julia/packages/Gadfly/09PWZ/src/guide.jl:141
 [5] #render_prepared#99(::Bool, ::Bool, ::typeof(Gadfly.render_prepared), ::Plot, ::Gadfly.Coord.Cartesian, ::Gadfly.Aesthetics, ::Array{Gadfly.Aesthetics,1}, ::Array{Array{Gadfly.StatisticElement,1},1}, ::Array{Array{Gadfly.Aesthetics,1},1}, ::Array{Array{Gadfly.Data,1},1}, ::Dict{Symbol,Gadfly.ScaleElement}, ::Array{Gadfly.GuideElement,1}) at /home/johan/.julia/packages/Gadfly/09PWZ/src/Gadfly.jl:823
 [6] render_prepared(::Plot, ::Gadfly.Coord.Cartesian, ::Gadfly.Aesthetics, ::Array{Gadfly.Aesthetics,1}, ::Array{Array{Gadfly.StatisticElement,1},1}, ::Array{Array{Gadfly.Aesthetics,1},1}, ::Array{Array{Gadfly.Data,1},1}, ::Dict{Symbol,Gadfly.ScaleElement}, ::Array{Gadfly.GuideElement,1}) at /home/johan/.julia/packages/Gadfly/09PWZ/src/Gadfly.jl:803
 [7] render(::Plot) at /home/johan/.julia/packages/Gadfly/09PWZ/src/Gadfly.jl:749
 [8] draw at /home/johan/.julia/packages/Gadfly/09PWZ/src/Gadfly.jl:854 [inlined]
 [9] show(::IOContext{Base.GenericIOBuffer{Array{UInt8,1}}}, ::MIME{Symbol("application/juno+plotpane")}, ::Plot) at /home/johan/.julia/packages/Gadfly/09PWZ/src/Gadfly.jl:960
 [10] show(::IOContext{Base.GenericIOBuffer{Array{UInt8,1}}}, ::String, ::Plot) at ./multimedia.jl:109
 [11] displayinplotpane(::Plot) at /home/johan/.julia/packages/Atom/X8fAI/src/display/showdisplay.jl:51
 [12] display(::Atom.JunoDisplay, ::Plot) at /home/johan/.julia/packages/Atom/X8fAI/src/display/showdisplay.jl:112
 [13] display(::Any) at ./multimedia.jl:323
 [14] #invokelatest#1 at ./essentials.jl:790 [inlined]
 [15] invokelatest at ./essentials.jl:789 [inlined]
 [16] print_response(::IO, ::Any, ::Bool, ::Bool, ::Any) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/REPL.jl:156
 [17] print_response(::REPL.AbstractREPL, ::Any, ::Bool, ::Bool) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/REPL.jl:141
 [18] (::getfield(REPL, Symbol("#do_respond#38")){Bool,getfield(Atom, Symbol("##176#177")),REPL.LineEditREPL,REPL.LineEdit.Prompt})(::Any, ::Any, ::Any) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/REPL.jl:718
 [19] #invokelatest#1 at ./essentials.jl:790 [inlined]
 [20] invokelatest at ./essentials.jl:789 [inlined]
 [21] run_interface(::REPL.Terminals.TextTerminal, ::REPL.LineEdit.ModalInterface, ::REPL.LineEdit.MIState) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/LineEdit.jl:2306
 [22] run_frontend(::REPL.LineEditREPL, ::REPL.REPLBackendRef) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/REPL.jl:1038
 [23] run_repl(::REPL.AbstractREPL, ::Any) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/REPL/src/REPL.jl:201
 [24] (::getfield(Base, Symbol("##737#739")){Bool,Bool,Bool,Bool})(::Module) at ./client.jl:390
 [25] #invokelatest#1 at ./essentials.jl:790 [inlined]
 [26] invokelatest at ./essentials.jl:789 [inlined]
 [27] run_main_repl(::Bool, ::Bool, ::Bool, ::Bool, ::Bool) at ./client.jl:374
 [28] exec_options(::Base.JLOptions) at ./client.jl:312
 [29] _start() at ./client.jl:464

Affie · 2019-10-16T11:03:43Z

julia> plotKDE(fg, [:l0;:l1])
ERROR: UndefVarError: getColorsByLength not defined
Stacktrace:
 [1] #plotKDE#2(::Array{BallTreeDensity,1}, ::Nothing, ::Nothing, ::Int64, ::Bool, ::typeof(plotKDE), ::DistributedFactorGraphs.GraphsDFG{SolverParams}, ::Array{Symbol,1}) at /home/johan/.julia/packages/RoMEPlotting/Vr0Yb/src/SolverVisualization.jl:78
 [2] plotKDE(::DistributedFactorGraphs.GraphsDFG{SolverParams}, ::Array{Symbol,1}) at /home/johan/.julia/packages/RoMEPlotting/Vr0Yb/src/SolverVisualization.jl:63
 [3] top-level scope at none:0

dehann · 2019-10-16T12:52:35Z

getColorsByLength should be in KDEPlotting. I recently moved it up. Might be missing an export, can be fixed by workaround by import in RoMEPlotting

dehann · 2019-10-16T12:52:54Z

or should reexport it rather from RoMEPlotting

dehann · 2019-10-16T12:53:36Z

ERROR: TypeError: in typeassert, expected Compose.PangoLayout, got Nothing

Looks like an upstream error

dehann · 2019-10-16T12:54:32Z

What version of Gadfly and Compose do you have?

dehann · 2019-10-16T12:57:58Z

Warning: evaluateDualTree vector evaluation API is changing for single point

is an old warning and not too serious. Will fix at some point.

Affie · 2019-10-16T12:59:54Z

[[Gadfly]]
version = "1.0.1"

[[Compose]]
version = "0.7.3"

dehann · 2019-10-16T13:23:58Z

something is wrong with my registry too: :-P

(rp65) pkg> status
    Status `/tmp/rp65/Project.toml`
  [904591bb] IncrementalInference v0.7.8
  [238d586b] RoMEPlotting v0.1.6

(rp65) pkg> update
  Updating registry at `~/.julia/registries/General`
┌ Warning: Some registries failed to update:
│     — `~/.julia/registries/General` — registry dirty
└ @ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.2/Pkg/src/Types.jl:1171
 Resolving package versions...
  Updating `/tmp/rp65/Project.toml`
 [no changes]
  Updating `/tmp/rp65/Manifest.toml`
 [no changes]

EDIT: fixed locally

dehann · 2019-10-16T17:10:57Z

This seems to be working fine on my local machine but not seeing where I fixed it. Will just make sure everything is committed and will tag all repos. Adding a new test to RoMEPlotting to make sure this issue is resolved.

dehann · 2019-10-16T18:30:43Z

The pango layout error is upstream, workaround is ]add [email protected], see
GiovineItalia/Gadfly.jl#1324

dehann · 2019-10-16T18:40:46Z

right, here is a full list that works:

(rp65) pkg> status
    Status `/tmp/rp65/Project.toml`
  [159f3aea] Cairo v0.6.0
  [a81c6b42] Compose v0.7.4
  [904591bb] IncrementalInference v0.7.8
  [c43967c8] KernelDensityEstimatePlotting v0.1.2 [`~/.julia/dev/KernelDensityEstimatePlotting`]
  [91fb55c2] RoME v0.4.2
  [238d586b] RoMEPlotting v0.1.7

dehann · 2019-10-17T06:39:54Z

should fixed by JuliaRobotics/KernelDensityEstimatePlotting.jl#20

Affie · 2019-10-17T07:37:38Z

Success! Issue can be closed as soon as KDEPlotting tag comes through.

test plotKDE array fix #65

dehann mentioned this issue Oct 16, 2019

test plotKDE array fix #65 #66

Merged

dehann mentioned this issue Oct 16, 2019

adding points interface JuliaRobotics/KernelDensityEstimatePlotting.jl#18

Merged

dehann added this to the v0.1.8 milestone Oct 16, 2019

dehann added bug upstream labels Oct 16, 2019

dehann closed this as completed in c156cdd Oct 17, 2019

dehann added a commit that referenced this issue Oct 17, 2019

Merge pull request #66 from JuliaRobotics/test/4Q19/65

ab4c273

test plotKDE array fix #65

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plotKDE(fg, [:l0;:l1]) StackOverflowError #65

plotKDE(fg, [:l0;:l1]) StackOverflowError #65

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plotKDE(fg, [:l0;:l1]) StackOverflowError #65

plotKDE(fg, [:l0;:l1]) StackOverflowError #65

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