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Fix slurm MPI submission bug #899

Fix slurm MPI submission bug

Fix slurm MPI submission bug #899

Triggered via pull request March 22, 2024 23:59
Status Failure
Total duration 24m 2s
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CI.yml

on: pull_request
Matrix: test-MPICH-jll
Matrix: test-OpenMPI-jll
Matrix: test-system-MPI-brew
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13 errors, 10 warnings, and 1 notice
Julia 1.10 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Julia 1.9 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Julia 1.10 - windows-latest - x64 - pull_request
Process completed with exit code 1.
Julia 1.9 - windows-latest - x64 - pull_request
Process completed with exit code 1.
Julia 1.10 - macos-latest - x64 - pull_request
Process completed with exit code 1.
Julia 1.9 - ubuntu-latest - OpenMPI_jll - pull_request
Process completed with exit code 1.
Julia 1.9 - macos-latest - openmpi - pull_request
Process completed with exit code 1.
Julia 1.9 - macos-latest - x64 - pull_request
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Julia 1.9 - macos-latest - mpich - pull_request
Process completed with exit code 1.
Documentation: ../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L44
failed to run `@example` block in src/input-nonjulian.md:43-47 ```@example blang using Pigeons Pigeons.setup_blang("blangDemos") ``` exception = failed process: Process(`/home/runner/.pigeons/blangDemos/gradlew installDist`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:565 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:480 [3] run @ ./process.jl:477 [inlined] [4] #82 @ ~/work/Pigeons.jl/Pigeons.jl/src/targets/BlangTarget.jl:144 [inlined] [5] cd(f::Pigeons.var"#82#84"{String}, dir::String) @ Base.Filesystem ./file.jl:112 [6] setup_blang(repo_name::String, organization::String) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/targets/BlangTarget.jl:141 [7] setup_blang(repo_name::String) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/targets/BlangTarget.jl:130 [8] top-level scope @ input-nonjulian.md:46 [9] eval @ ./boot.jl:370 [inlined] [10] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [11] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [12] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [13] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [14] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [15] with_logger @ ./logging.jl:626 [inlined] [16] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [17] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L44
failed to run `@example` block in src/input-nonjulian.md:53-62 ```@example blang using Pigeons blang_unidentifiable_example(n_trials, n_successes) = Pigeons.BlangTarget( `$(Pigeons.blang_executable("blangDemos", "demos.UnidentifiableProduct")) --model.nTrials $n_trials --model.nFails $n_successes` ) pt = pigeons(target = blang_unidentifiable_example(100, 50)) nothing # hide ``` exception = Expect.ExpectEOF() Stacktrace: [1] expect!(proc::Expect.ExpectProc, vec::Vector{String}; timeout::Float64) @ Expect ~/.julia/packages/Expect/ary8b/src/Expect.jl:283 [2] expect! @ ~/.julia/packages/Expect/ary8b/src/Expect.jl:264 [inlined] [3] expect!(proc::Expect.ExpectProc, str::String; timeout::Float64) @ Expect ~/.julia/packages/Expect/ary8b/src/Expect.jl:299 [4] expect!(proc::Expect.ExpectProc, str::String) @ Expect ~/.julia/packages/Expect/ary8b/src/Expect.jl:297 [5] invoke_worker(state::Pigeons.StreamState, request::String, return_type::Type{Nothing}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/targets/StreamTarget.jl:109 [6] invoke_worker @ ~/work/Pigeons.jl/Pigeons.jl/src/targets/StreamTarget.jl:108 [inlined] [7] call_sampler! @ ~/work/Pigeons.jl/Pigeons.jl/src/targets/StreamTarget.jl:92 [inlined] [8] sample_iid! @ ~/work/Pigeons.jl/Pigeons.jl/src/targets/StreamTarget.jl:78 [inlined] [9] explore! @ ~/work/Pigeons.jl/Pigeons.jl/src/pt/pigeons.jl:105 [inlined] [10] explore!(pt::PT{...}, explorer::Pigeons.BlangTarget, multithreaded::Val{false}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/pigeons.jl:96 [11] macro expansion @ ~/work/Pigeons.jl/Pigeons.jl/src/pt/pigeons.jl:50 [inlined] [12] macro expansion @ ./timing.jl:501 [inlined] [13] run_one_round!(pt::PT{...}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/pigeons.jl:49 [14] pigeons(pt::PT{...}) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/pigeons.jl:18 [15] pigeons(pt_arguments::Inputs{Pigeons.BlangTarget, Nothing, Nothing, Nothing, Nothing}, #unused#::Pigeons.ThisProcess) @ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/api.jl:19 [16] #pigeons#157 @ ~/work/Pigeons.jl/Pigeons.jl/src/api.jl:16 [inlined] [17] top-level scope @ input-nonjulian.md:60 [18] eval @ ./boot.jl:370 [inlined] [19] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [20] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [21] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [22] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [23] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [24] with_logger @ ./logging.jl:626 [inlined] [25] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [26] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L44
failed to run `@example` block in src/input-nonjulian.md:69-71 ```@example blang Pigeons.kill_child_processes(pt) ``` exception = UndefVarError: `pt` not defined Stacktrace: [1] top-level scope @ input-nonjulian.md:70 [2] eval @ ./boot.jl:370 [inlined] [3] #58 @ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
Documentation
Process completed with exit code 1.
Julia 1.10 - ubuntu-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Julia 1.9 - ubuntu-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Julia 1.10 - windows-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Julia 1.9 - windows-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Julia 1.10 - macos-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Julia 1.9 - ubuntu-latest - OpenMPI_jll - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@latest, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Julia 1.9 - macos-latest - openmpi - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Julia 1.9 - macos-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Julia 1.9 - macos-latest - mpich - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Documentation
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
[julia-buildpkg] Caching of the julia depot was not detected
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