Fix slurm MPI submission bug #899
CI.yml
on: pull_request
Documentation
23m 51s
Matrix: test-MPICH-jll
Matrix: test-OpenMPI-jll
Matrix: test-system-MPI-brew
Annotations
13 errors, 10 warnings, and 1 notice
Julia 1.10 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
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Julia 1.9 - ubuntu-latest - x64 - pull_request
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Julia 1.10 - windows-latest - x64 - pull_request
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Julia 1.9 - windows-latest - x64 - pull_request
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Julia 1.10 - macos-latest - x64 - pull_request
Process completed with exit code 1.
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Julia 1.9 - ubuntu-latest - OpenMPI_jll - pull_request
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Julia 1.9 - macos-latest - openmpi - pull_request
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Julia 1.9 - macos-latest - x64 - pull_request
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Julia 1.9 - macos-latest - mpich - pull_request
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Documentation:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L44
failed to run `@example` block in src/input-nonjulian.md:43-47
```@example blang
using Pigeons
Pigeons.setup_blang("blangDemos")
```
exception =
failed process: Process(`/home/runner/.pigeons/blangDemos/gradlew installDist`, ProcessExited(1)) [1]
Stacktrace:
[1] pipeline_error
@ ./process.jl:565 [inlined]
[2] run(::Cmd; wait::Bool)
@ Base ./process.jl:480
[3] run
@ ./process.jl:477 [inlined]
[4] #82
@ ~/work/Pigeons.jl/Pigeons.jl/src/targets/BlangTarget.jl:144 [inlined]
[5] cd(f::Pigeons.var"#82#84"{String}, dir::String)
@ Base.Filesystem ./file.jl:112
[6] setup_blang(repo_name::String, organization::String)
@ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/targets/BlangTarget.jl:141
[7] setup_blang(repo_name::String)
@ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/targets/BlangTarget.jl:130
[8] top-level scope
@ input-nonjulian.md:46
[9] eval
@ ./boot.jl:370 [inlined]
[10] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[11] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[12] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[13] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[14] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:514
[15] with_logger
@ ./logging.jl:626 [inlined]
[16] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[17] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
|
Documentation:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L44
failed to run `@example` block in src/input-nonjulian.md:53-62
```@example blang
using Pigeons
blang_unidentifiable_example(n_trials, n_successes) =
Pigeons.BlangTarget(
`$(Pigeons.blang_executable("blangDemos", "demos.UnidentifiableProduct")) --model.nTrials $n_trials --model.nFails $n_successes`
)
pt = pigeons(target = blang_unidentifiable_example(100, 50))
nothing # hide
```
exception =
Expect.ExpectEOF()
Stacktrace:
[1] expect!(proc::Expect.ExpectProc, vec::Vector{String}; timeout::Float64)
@ Expect ~/.julia/packages/Expect/ary8b/src/Expect.jl:283
[2] expect!
@ ~/.julia/packages/Expect/ary8b/src/Expect.jl:264 [inlined]
[3] expect!(proc::Expect.ExpectProc, str::String; timeout::Float64)
@ Expect ~/.julia/packages/Expect/ary8b/src/Expect.jl:299
[4] expect!(proc::Expect.ExpectProc, str::String)
@ Expect ~/.julia/packages/Expect/ary8b/src/Expect.jl:297
[5] invoke_worker(state::Pigeons.StreamState, request::String, return_type::Type{Nothing})
@ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/targets/StreamTarget.jl:109
[6] invoke_worker
@ ~/work/Pigeons.jl/Pigeons.jl/src/targets/StreamTarget.jl:108 [inlined]
[7] call_sampler!
@ ~/work/Pigeons.jl/Pigeons.jl/src/targets/StreamTarget.jl:92 [inlined]
[8] sample_iid!
@ ~/work/Pigeons.jl/Pigeons.jl/src/targets/StreamTarget.jl:78 [inlined]
[9] explore!
@ ~/work/Pigeons.jl/Pigeons.jl/src/pt/pigeons.jl:105 [inlined]
[10] explore!(pt::PT{...}, explorer::Pigeons.BlangTarget, multithreaded::Val{false})
@ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/pigeons.jl:96
[11] macro expansion
@ ~/work/Pigeons.jl/Pigeons.jl/src/pt/pigeons.jl:50 [inlined]
[12] macro expansion
@ ./timing.jl:501 [inlined]
[13] run_one_round!(pt::PT{...})
@ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/pigeons.jl:49
[14] pigeons(pt::PT{...})
@ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/pt/pigeons.jl:18
[15] pigeons(pt_arguments::Inputs{Pigeons.BlangTarget, Nothing, Nothing, Nothing, Nothing}, #unused#::Pigeons.ThisProcess)
@ Pigeons ~/work/Pigeons.jl/Pigeons.jl/src/api.jl:19
[16] #pigeons#157
@ ~/work/Pigeons.jl/Pigeons.jl/src/api.jl:16 [inlined]
[17] top-level scope
@ input-nonjulian.md:60
[18] eval
@ ./boot.jl:370 [inlined]
[19] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[20] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[21] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[22] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[23] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:514
[24] with_logger
@ ./logging.jl:626 [inlined]
[25] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[26] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
|
Documentation:
../../../.julia/packages/Documenter/2OZOh/src/utilities/utilities.jl#L44
failed to run `@example` block in src/input-nonjulian.md:69-71
```@example blang
Pigeons.kill_child_processes(pt)
```
exception =
UndefVarError: `pt` not defined
Stacktrace:
[1] top-level scope
@ input-nonjulian.md:70
[2] eval
@ ./boot.jl:370 [inlined]
[3] #58
@ ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[7] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:514
[8] with_logger
@ ./logging.jl:626 [inlined]
[9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/2OZOh/src/expander_pipeline.jl:752
|
Documentation
Process completed with exit code 1.
|
Julia 1.10 - ubuntu-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Julia 1.9 - ubuntu-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Julia 1.10 - windows-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Julia 1.9 - windows-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Julia 1.10 - macos-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Julia 1.9 - ubuntu-latest - OpenMPI_jll - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@latest, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Julia 1.9 - macos-latest - openmpi - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Julia 1.9 - macos-latest - x64 - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Julia 1.9 - macos-latest - mpich - pull_request
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Documentation
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache. To ignore, set input `ignore-no-cache: true`
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