Added Firedrake CI

.github/workflows/ci.yml → .github/workflows/ci-fenics.yml

@@ -1,19 +1,23 @@
-name: CI
+name: FEniCS
 
-on: [push]
+on:
+  push:
+    branches:
+      - master
+  pull_request:
 
 jobs:
 
   test:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v1
+      - uses: actions/checkout@v2
         with:
           fetch-depth: 1
 
       - name: Setup Miniconda
-        uses: goanpeca/setup-miniconda@v1.0.2
+        uses: conda-incubator/setup-miniconda@v2
         with: 
           auto-update-conda: true
           python-version: 3.8
@@ -23,6 +27,7 @@ jobs:
         run: |
           conda info
           which python
+
       - name: Conda install FEniCS
         shell: bash -l {0}
         run: |
@@ -32,19 +37,20 @@ jobs:
           conda activate fenicsproject
           which python
           python -c "from dolfin import *"
+
       - name: Install dependencies
         shell: bash -l {0}
         run: |
           conda activate fenicsproject
           python -m pip install --upgrade pip
-          python -m pip install git+https://github.com/dolfin-adjoint/pyadjoint.git@master
-          python -m pip install git+https://github.com/IvanYashchuk/numpy-fenics-adjoint
-          python -m pip install pymc3
           python -m pip install pytest
           python -m pip install pytest-cov
           python -m pip install pytest-check
           python -m pip install coveralls
           python -m pip install fdm
+          python -m pip install git+https://github.com/dolfin-adjoint/pyadjoint.git@master
+          python -m pip install git+https://github.com/IvanYashchuk/fecr.git@master
+          python -m pip install pymc3
 
       - name: Install fenics-pymc3
         shell: bash -l {0}
@@ -60,5 +66,12 @@ jobs:
           conda activate fenicsproject
           python -c "import sys; print('\n'.join(sys.path))"
           export HDF5_DISABLE_VERSION_CHECK=1
-          python -m pytest --cov=fenics_pymc3 tests/
+          python -m pytest --cov=fenics_pymc3 --cov-config=tests/.coveragerc tests/fenics -vvv
+
+      - name: Send coveralls
+        shell: bash -l {0}
+        env:
+          COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
+        run: |
+          conda activate fenicsproject
           coveralls

.github/workflows/ci-firedrake.yml

@@ -0,0 +1,69 @@
+name: Firedrake
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+
+jobs:
+
+  test:
+    runs-on: ubuntu-latest
+    container:
+      image: docker://firedrakeproject/firedrake-vanilla:latest
+
+    steps:
+      # This Docker file changes sets USER to firedrake instead of using the default user, so we need to update file permissions for this image to work on GH Actions.
+      # See https://help.github.com/en/actions/reference/virtual-environments-for-github-hosted-runners#docker-container-filesystem
+      # (copied from https://help.github.com/en/actions/migrating-to-github-actions/migrating-from-circleci-to-github-actions)
+      - name: Setup file system permissions
+        run: sudo chmod -R 777 $GITHUB_WORKSPACE /github /__w/_temp
+
+      - uses: actions/checkout@v2
+        with:
+          fetch-depth: 1
+
+      - name: Python info
+        shell: bash -l {0}
+        run: |
+          source /home/firedrake/firedrake/bin/activate
+          which python
+          python -c "import sys; print('\n'.join(sys.path))"
+          python -c "from firedrake import *"
+
+      - name: Install dependencies
+        shell: bash -l {0}
+        run: |
+          source /home/firedrake/firedrake/bin/activate
+          python -m pip install --upgrade pip
+          python -m pip install pytest
+          python -m pip install pytest-cov
+          python -m pip install pytest-check
+          python -m pip install coveralls
+          python -m pip install fdm
+          python -m pip install git+https://github.com/dolfin-adjoint/pyadjoint.git@master
+          python -m pip install git+https://github.com/IvanYashchuk/fecr.git@master
+          python -m pip install pymc3
+
+      - name: Install current package
+        shell: bash -l {0}
+        run: |
+          source /home/firedrake/firedrake/bin/activate
+          python -m pip install -e .
+
+      - name: Test with pytest
+        shell: bash -l {0}
+        run: |
+          source /home/firedrake/firedrake/bin/activate
+          python -c "import sys; print('\n'.join(sys.path))"
+          export HDF5_DISABLE_VERSION_CHECK=1
+          python -m pytest --cov=fenics_pymc3 --cov-config=tests/.coveragerc tests/firedrake -vvv
+
+      - name: Send coveralls
+        shell: bash -l {0}
+        env:
+          COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
+        run: |
+          source /home/firedrake/firedrake/bin/activate
+          coveralls