Code

Brushing over notebook#1470

Code

Merged

PaulJonasJost merged 29 commits intodevelopICB-DCM/pyPESTO:developfrom brush_over_notebooksICB-DCM/pyPESTO:brush_over_notebooksCopy head branch name to clipboardOct 8, 2024

+765-275

Commits

Commits on Sep 18, 2024

• shortening many optimizations. Replacing Boehm with conversion reaction where possible. Thermodynamic more robust.

  PaulJonasJost

  committed
  aa88768

  Copy full SHA for aa88768

• Correctly install pyswarms in notebooks1

  PaulJonasJost

  committed
  7fb1b5a

  Copy full SHA for 7fb1b5a

• renamed "model_conversion_reaction" to "conversion_reaction" according to naming scheme in benchmark models as well

  PaulJonasJost

  committed
  a1a54f7

  Copy full SHA for a1a54f7

Commits on Sep 19, 2024

• Revert "renamed "model_conversion_reaction" to "conversion_reaction" according to naming scheme in benchmark models as well"

  Show description for 8dced60
  PaulJonasJost

  committed
  8dced60

  Copy full SHA for 8dced60

• reverted changes and kept original structure. adjusted amici.ipynb

  PaulJonasJost

  committed
  646b7fe

  Copy full SHA for 646b7fe

• changed directory

  PaulJonasJost

  committed
  667199d

  Copy full SHA for 667199d

• changed directory II

  PaulJonasJost

  committed
  bfac160

  Copy full SHA for bfac160

• Start out with boehm, for optimization etc change to conversion reaction

  PaulJonasJost

  committed
  b6c1624

  Copy full SHA for b6c1624

• fixed custom_objective_function

  PaulJonasJost

  committed
  0e9d274

  Copy full SHA for 0e9d274

• for now: more starts with pyswarms.

  PaulJonasJost

  committed
  cbf26b8

  Copy full SHA for cbf26b8

Commits on Sep 20, 2024

• changed julia notebooks ever so slightly.

  PaulJonasJost

  committed
  ad8e004

  Copy full SHA for ad8e004

Commits on Sep 24, 2024

• Merge branch 'develop' into brush_over_notebooks

  PaulJonasJost

  authored
  4e2a9e4

  Copy full SHA for 4e2a9e4

• Revert changes to julia notebook

  PaulJonasJost

  committed
  cc64fb7

  Copy full SHA for cc64fb7

Commits on Sep 25, 2024

• Merge branch 'develop' into brush_over_notebooks

  PaulJonasJost

  authored
  3b2b6a0

  Copy full SHA for 3b2b6a0

Commits on Sep 26, 2024

• Integrate comments

  PaulJonasJost

  committed
  c42094c

  Copy full SHA for c42094c

• Merge remote-tracking branch 'origin/brush_over_notebooks' into brush_over_notebooks

  PaulJonasJost

  committed
  683ea43

  Copy full SHA for 683ea43

Commits on Sep 30, 2024

• Merge branch 'develop' into brush_over_notebooks

  PaulJonasJost

  authored
  0268a7d

  Copy full SHA for 0268a7d

Commits on Oct 1, 2024

• Correct PEtab logo now.

  PaulJonasJost

  committed
  eab1bbe

  Copy full SHA for eab1bbe

• Update doc/example/getting_started.ipynb

  Show description for 19798a2
  

  PaulJonasJost

  and

  dilpath

  authored
  19798a2

  Copy full SHA for 19798a2

• Merge branch 'develop' into brush_over_notebooks

  PaulJonasJost

  authored
  ec9ce42

  Copy full SHA for ec9ce42

• Update doc/example/getting_started.ipynb

  Show description for bcd88ee
  

  PaulJonasJost

  and

  dilpath

  authored
  bcd88ee

  Copy full SHA for bcd88ee

Commits on Oct 2, 2024

• Adjusted amici logo

  PaulJonasJost

  committed
  b71ad29

  Copy full SHA for b71ad29

• Merge branch 'develop' into brush_over_notebooks

  PaulJonasJost

  authored
  de2beb7

  Copy full SHA for de2beb7

Commits on Oct 7, 2024

• Removed pyswarms from waterfall visualization

  PaulJonasJost

  committed
  a7b5124

  Copy full SHA for a7b5124

• Merge remote-tracking branch 'origin/brush_over_notebooks' into brush_over_notebooks

  PaulJonasJost

  committed
  1c7c33d

  Copy full SHA for 1c7c33d

Commits on Oct 8, 2024

• Merge branch 'develop' into brush_over_notebooks

  PaulJonasJost

  authored
  4b2ef65

  Copy full SHA for 4b2ef65

• Fixed a random seed for sampling notebook

  PaulJonasJost

  committed
  e12f884

  Copy full SHA for e12f884

• Merge remote-tracking branch 'origin/brush_over_notebooks' into brush_over_notebooks

  PaulJonasJost

  committed
  cf4aa31

  Copy full SHA for cf4aa31

• Merge branch 'develop' into brush_over_notebooks

  PaulJonasJost

  authored
  db1168a

  Copy full SHA for db1168a