renamed "model_conversion_reaction" to "conversion_reaction" accordin…

…g to naming scheme in benchmark models as well
ICB-DCM · Sep 18, 2024 · a1a54f7 · a1a54f7
1 parent 7fb1b5a
commit a1a54f7
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Showing 5 changed files with 4 additions and 81 deletions.
diff --git a/doc/example/conversion_reaction.ipynb b/doc/example/conversion_reaction.ipynb
@@ -50,7 +50,7 @@
     "import pypesto.visualize as visualize\n",
     "\n",
     "# sbml file we want to import\n",
-    "sbml_file = \"conversion_reaction/model_conversion_reaction.xml\"\n",
+    "sbml_file = \"conversion_reaction/conversion_reaction.xml\"\n",
     "# name of the model that will also be the name of the python module\n",
     "model_name = \"model_conversion_reaction\"\n",
     "# directory to which the generated model code is written\n",

diff --git a/doc/example/conversion_reaction/conversion_reaction.yaml b/doc/example/conversion_reaction/conversion_reaction.yaml
@@ -8,4 +8,4 @@ problems:
   observable_files:
   - observables.tsv
   sbml_files:
-  - model_conversion_reaction.xml
+  - conversion_reaction.xml
diff --git a/doc/example/conversion_reaction/create.py b/doc/example/conversion_reaction/create.py
@@ -68,7 +68,7 @@ def analytical_a(t, a0=a0, b0=b0, k1=k1, k2=k2):
     PARAMETER_FILE: "parameters.tsv",
     PROBLEMS: [
         {
-            SBML_FILES: ["model_conversion_reaction.xml"],
+            SBML_FILES: ["conversion_reaction.xml"],
             CONDITION_FILES: ["conditions.tsv"],
             MEASUREMENT_FILES: ["measurements.tsv"],
             OBSERVABLE_FILES: ["observables.tsv"],

diff --git a/doc/example/conversion_reaction/model_conversion_reaction.xml b/doc/example/conversion_reaction/model_conversion_reaction.xml
diff --git a/doc/example/conversion_reaction/multiple_conditions/conversion_reaction.yaml b/doc/example/conversion_reaction/multiple_conditions/conversion_reaction.yaml
@@ -8,4 +8,4 @@ problems:
   observable_files:
   - ../observables.tsv
   sbml_files:
-  - ../model_conversion_reaction.xml
+  - ../conversion_reaction.xml