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Hierarchical: restructuring and add relative to InnerCalculatorCollector #3331

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Run time

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Job	Run time
petab (3.9)	16m 23s
base (3.9)	6m 10s
petab (3.11)	14m 15s
base (3.11)	5m 55s
hierarchical (3.9)	2m 30s
docs (3.11)	47s
hierarchical (3.11)	2m 18s
julia (3.9)	20m 7s
julia (3.11)	20m 24s
mac (3.11)	21m 13s
notebooks1 (3.9)	7m 41s
notebooks2 (3.9)	4m 27s
quality (3.11)	1m 12s
optimize (3.11)	2m 32s
select (3.9)	1m 51s
select (3.11)	2m 23s
windows (3.11)	1m 59s
	2h 12m 7s