Release 0.4.10 #382
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Release 0.4.10 #382
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(case 18 failing, requires AMICI v0.11.28)
* git subrepo clone (merge) --branch=v0.11.28 --force [email protected]:AMICI-dev/AMICI.git deps/AMICI subrepo: subdir: "deps/AMICI" merged: "da34367c" upstream: origin: "[email protected]:AMICI-dev/AMICI.git" branch: "v0.11.28" commit: "da34367c" git-subrepo: version: "0.4.3" origin: "https://github.com/ingydotnet/git-subrepo" commit: "b4ae8f1" * Fix sundials cmake config * New AMICI SteadyStateSensitivityMode * Changed amici::ModelDimensions * Removed amici::Solver::setNewtonMaxLinearSteps * Fix sundials cmake config * Skip PEtab test 0018 (RateRules) for now
* git subrepo clone (merge) --branch=v0.12.0 --force [email protected]:AMICI-dev/AMICI.git deps/AMICI subrepo: subdir: "deps/AMICI" merged: "9c360293" upstream: origin: "[email protected]:AMICI-dev/AMICI.git" branch: "v0.12.0" commit: "9c360293" git-subrepo: version: "0.4.3" origin: "https://github.com/ingydotnet/git-subrepo" commit: "1b06cbf" * EXCLUDE_FROM_ALL * fixup petab.write_measurement_df * Add missing scipy dependency * Require PythonInterp 3.8 * --flatten
* Add minibatch documentation to RTD * fix formatting
* Use clang in container works better for larger models * add libomp-dev * build type "Release"
* Ubuntu 22.04 * swig4 * Optimized build
* Update AMICI to v0.20.0 git subrepo clone (merge) --branch=v0.20.0 --force [email protected]:AMICI-dev/AMICI.git deps/AMICI subrepo: subdir: "deps/AMICI" merged: "ffcbf665" upstream: origin: "[email protected]:AMICI-dev/AMICI.git" branch: "v0.20.0" commit: "ffcbf665" git-subrepo: version: "0.4.6" origin: "https://github.com/ingydotnet/git-subrepo" commit: "110b9eb" * Update AMICI to v0.20.0 * Fixes some amici setuptools incompatibility * Adapt to changes in logging * Handle git permission issues * Fix RTD issues * Update valgrind suppressions * Update sonar tools Requires: * CMake >= 3.22
Move python/swig/ to swig/ to not interfere with python packaging.
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