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Speedup AMICI #22

Merged
merged 1 commit into from
May 2, 2023
Merged

Speedup AMICI #22

merged 1 commit into from
May 2, 2023

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@dilpath dilpath commented May 2, 2023

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@dilpath dilpath merged commit e9e7ba3 into redesign May 2, 2023
dilpath added a commit that referenced this pull request May 3, 2023
* gradient check: add sorting; fix atol

* redesign derivative computation; analysis and success methods; notebook; tests

* analysis: transform by direction scale; derivative checks; success: average of consistent results; amici: fiddy-runAmiciSimulation; numpy helper method; clean; update readme

* amici: fix tests; amici derivative output now matches fiddy derivative structure; clean

* Relative steps (#21)

* Specify sensitivity order in prepared amici functions (#22)

* Update AMICI test for scaled parameters (#23)

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Co-authored-by: Fabian Fröhlich <[email protected]>
@dilpath dilpath deleted the speedup_amici_ff branch May 3, 2023 16:02
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